Wall clock time and date at job start Wed Apr 1 2020 01:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00305 * 2 1 4 4 H 1.48499 * 109.46738 * 274.58250 * 3 2 1 5 5 H 1.48500 * 109.46839 * 34.57975 * 3 2 1 6 6 H 1.48498 * 109.47212 * 154.57866 * 3 2 1 7 7 C 1.38815 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99474 * 164.37017 * 7 2 1 9 9 N 1.36935 * 120.00353 * 344.37362 * 7 2 1 10 10 C 1.47264 * 121.35366 * 156.16397 * 9 7 2 11 11 C 1.52992 * 108.18617 * 118.47849 * 10 9 7 12 12 N 1.45650 * 110.77252 * 46.72135 * 11 10 9 13 13 C 1.46504 * 117.70028 * 158.10122 * 12 11 10 14 14 H 1.09001 * 109.49852 * 0.06585 * 13 12 11 15 15 C 1.53048 * 109.49479 * 240.00067 * 13 12 11 16 16 C 1.53042 * 109.53299 * 178.68649 * 15 13 12 17 17 C 1.53185 * 109.31306 * 61.36982 * 16 15 13 18 18 N 1.46928 * 108.89373 * 305.28543 * 17 16 15 19 19 C 1.34774 * 120.63264 * 233.67877 * 18 17 16 20 20 O 1.21287 * 119.99398 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00208 * 0.02562 * 19 18 17 22 22 C 1.52996 * 109.47092 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47081 * 180.02562 * 22 21 19 24 24 F 1.39906 * 109.46970 * 180.02562 * 23 22 21 25 25 C 1.47204 * 118.55152 * 53.54373 * 18 17 16 26 26 C 1.33371 * 124.59250 * 338.38598 * 12 11 10 27 27 O 1.21280 * 118.49330 * 184.01348 * 26 12 11 28 28 C 1.47049 * 121.34902 * 336.14643 * 9 7 2 29 29 H 0.96997 * 119.99853 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.72293 * 358.80504 * 10 9 7 31 31 H 1.09001 * 109.75863 * 238.16633 * 10 9 7 32 32 H 1.09003 * 109.21695 * 286.39127 * 11 10 9 33 33 H 1.08997 * 109.22195 * 167.06021 * 11 10 9 34 34 H 1.08998 * 109.45889 * 58.67112 * 15 13 12 35 35 H 1.08995 * 109.44774 * 298.70035 * 15 13 12 36 36 H 1.08995 * 109.49650 * 301.40966 * 16 15 13 37 37 H 1.09011 * 109.49167 * 181.31697 * 16 15 13 38 38 H 1.08994 * 109.59386 * 65.15128 * 17 16 15 39 39 H 1.09007 * 109.58618 * 185.43280 * 17 16 15 40 40 H 1.09001 * 109.46663 * 299.99744 * 21 19 18 41 41 H 1.08993 * 109.46900 * 59.99628 * 21 19 18 42 42 H 1.09000 * 109.47361 * 299.99761 * 22 21 19 43 43 H 1.09006 * 109.47412 * 60.00026 * 22 21 19 44 44 H 1.09007 * 109.46904 * 299.99338 * 23 22 21 45 45 H 1.08997 * 109.47677 * 59.99759 * 23 22 21 46 46 H 1.09000 * 109.53736 * 186.67225 * 25 18 17 47 47 H 1.09005 * 109.67967 * 66.36675 * 25 18 17 48 48 H 1.08995 * 109.57239 * 342.57689 * 28 9 7 49 49 H 1.09006 * 109.56790 * 102.81839 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4009 2.1022 -1.3956 5 1 1.4995 2.6227 0.7946 6 1 3.5929 1.4141 0.6010 7 6 2.0102 -1.2022 -0.0005 8 1 3.0603 -1.2193 -0.2526 9 7 1.3635 -2.3663 0.3184 10 6 1.8609 -3.6717 -0.1479 11 6 2.2078 -4.5166 1.0795 12 7 1.1380 -4.4579 2.0662 13 6 1.0546 -5.5441 3.0458 14 1 1.8563 -6.2599 2.8643 15 6 -0.2981 -6.2478 2.9142 16 6 -0.3732 -7.4033 3.9149 17 6 -0.2526 -6.8497 5.3381 18 7 0.9763 -6.0503 5.4351 19 6 1.8869 -6.3045 6.3957 20 8 2.8972 -5.6371 6.4654 21 6 1.6497 -7.4180 7.3830 22 6 2.8256 -7.4932 8.3590 23 6 2.5851 -8.6242 9.3610 24 9 3.6601 -8.6925 10.2539 25 6 1.1914 -4.9694 4.4592 26 6 0.2257 -3.4875 2.1371 27 8 -0.5727 -3.5096 3.0497 28 6 0.1444 -2.3637 1.1406 29 1 -0.4850 0.8400 0.0004 30 1 2.7516 -3.5288 -0.7596 31 1 1.0894 -4.1724 -0.7328 32 1 3.1283 -4.1402 1.5257 33 1 2.3561 -5.5518 0.7723 34 1 -0.4083 -6.6364 1.9019 35 1 -1.0985 -5.5369 3.1196 36 1 0.4419 -8.1018 3.7258 37 1 -1.3275 -7.9186 3.8045 38 1 -1.1154 -6.2219 5.5604 39 1 -0.2086 -7.6751 6.0487 40 1 0.7308 -7.2236 7.9361 41 1 1.5592 -8.3639 6.8490 42 1 3.7448 -7.6875 7.8063 43 1 2.9157 -6.5472 8.8930 44 1 1.6659 -8.4303 9.9139 45 1 2.4953 -9.5700 8.8269 46 1 2.1907 -4.5541 4.5897 47 1 0.4480 -4.1864 4.6089 48 1 0.0600 -1.4122 1.6654 49 1 -0.7271 -2.5069 0.5018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131721659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:55 Heat of formation + Delta-G solvation = -115.357122 kcal Electronic energy + Delta-G solvation = -31029.813659 eV Core-core repulsion = 26712.962924 eV Total energy + Delta-G solvation = -4316.850735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.52597 -41.97191 -40.82546 -38.34637 -37.72369 -36.12097 -35.05032 -33.87572 -33.05032 -31.34257 -30.51379 -28.71340 -27.94508 -26.11822 -25.33738 -24.53590 -23.33630 -23.02170 -21.70877 -19.95182 -19.85789 -18.70342 -18.18396 -17.88515 -17.45569 -17.25743 -17.02066 -16.66673 -16.42502 -16.27889 -16.06393 -15.64928 -15.59391 -15.24275 -15.17506 -14.86368 -14.78989 -14.58227 -14.20418 -13.99949 -13.79051 -13.70422 -13.32003 -13.25600 -12.90067 -12.76723 -12.71957 -12.49532 -12.40636 -12.33285 -12.18912 -11.98982 -11.91146 -11.79643 -11.78010 -11.73531 -11.52212 -10.91930 -10.70797 -10.58526 -9.95305 -9.42557 -8.89032 -7.96505 -5.40600 1.44314 1.47938 1.56008 1.57150 1.62778 1.79137 2.24892 2.45587 3.21974 3.38287 3.44883 3.63433 3.72346 3.81406 3.89798 3.96428 4.01423 4.09176 4.14613 4.17785 4.22834 4.29150 4.42884 4.43643 4.47459 4.55028 4.61807 4.68233 4.73945 4.75975 4.82314 4.89026 4.92220 4.95465 5.01043 5.06936 5.12688 5.17412 5.25816 5.26835 5.29781 5.44814 5.58031 5.70399 6.21309 6.40545 6.50955 6.94588 7.12842 7.22743 7.68490 8.19842 9.12125 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.002515 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.609640 B =11129.676946 C =11903.414078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.083 0.917 9 N -0.612 5.612 10 C 0.126 3.874 11 C 0.103 3.897 12 N -0.592 5.592 13 C 0.135 3.865 14 H 0.103 0.897 15 C -0.134 4.134 16 C -0.119 4.119 17 C 0.099 3.901 18 N -0.606 5.606 19 C 0.503 3.497 20 O -0.597 6.597 21 C -0.124 4.124 22 C -0.139 4.139 23 C 0.061 3.939 24 F -0.242 7.242 25 C 0.101 3.899 26 C 0.507 3.493 27 O -0.584 6.584 28 C 0.176 3.824 29 H 0.252 0.748 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 -24.229 11.515 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.100 0.900 9 N -0.337 5.337 10 C 0.000 4.000 11 C -0.020 4.020 12 N -0.323 5.323 13 C 0.031 3.969 14 H 0.121 0.879 15 C -0.173 4.173 16 C -0.158 4.158 17 C -0.022 4.022 18 N -0.338 5.338 19 C 0.293 3.707 20 O -0.478 6.478 21 C -0.163 4.163 22 C -0.177 4.177 23 C 0.007 3.993 24 F -0.223 7.223 25 C -0.023 4.023 26 C 0.296 3.704 27 O -0.466 6.466 28 C 0.047 3.953 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.277 -23.732 11.986 26.589 hybrid contribution 0.355 2.003 -0.392 2.072 sum 0.078 -21.729 11.594 24.629 Atomic orbital electron populations 1.70115 1.06651 1.26176 1.55587 1.25813 0.96145 1.01681 1.01135 0.85236 0.78067 0.79479 0.77544 1.20704 1.22372 1.19450 1.19547 0.92960 0.85010 1.41472 0.89973 1.44387 1.28627 1.02961 1.57773 1.21485 0.99425 0.85065 0.93997 1.22106 0.88607 1.02047 0.89288 1.47364 1.29681 1.23059 1.32195 1.21513 1.00060 0.88343 0.86943 0.87889 1.21921 0.96319 0.98213 1.00814 1.21870 1.04703 0.96527 0.92673 1.22134 0.85074 0.95758 0.99262 1.48291 1.21828 1.33933 1.29779 1.21592 0.81736 0.85558 0.81766 1.90706 1.30016 1.52874 1.74229 1.21625 1.01059 0.97880 0.95750 1.21871 0.98982 0.99489 0.97374 1.22224 0.87105 1.00434 0.89569 1.92732 1.60459 1.97776 1.71367 1.21828 1.01390 0.90585 0.88509 1.21361 0.79605 0.83320 0.86088 1.90497 1.42980 1.77619 1.35463 1.20568 0.89909 0.94386 0.90387 0.93875 0.89064 0.94238 0.92567 0.87215 0.91167 0.92192 0.89788 0.87682 0.91626 0.85109 0.85428 0.84517 0.92019 0.92613 0.88212 0.87729 0.92684 0.91488 0.90736 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.28 11.08 21.65 0.24 -55.04 16 2 C -0.05 -2.90 5.01 84.86 0.42 -2.47 16 3 Si 0.97 44.75 29.58 68.60 2.03 46.78 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.26 -13.78 9.70 84.03 0.82 -12.97 16 8 H 0.08 4.12 7.88 -2.91 -0.02 4.09 16 9 N -0.61 -29.57 3.02 -703.51 -2.13 -31.69 16 10 C 0.13 4.50 6.60 86.23 0.57 5.07 16 11 C 0.10 3.07 6.45 86.54 0.56 3.63 16 12 N -0.59 -20.25 2.79 -801.94 -2.24 -22.48 16 13 C 0.14 3.74 2.62 45.07 0.12 3.86 16 14 H 0.10 2.39 7.73 -2.39 -0.02 2.37 16 15 C -0.13 -3.12 5.03 30.62 0.15 -2.96 16 16 C -0.12 -1.56 6.08 30.67 0.19 -1.37 16 17 C 0.10 1.35 6.33 86.36 0.55 1.89 16 18 N -0.61 -13.88 2.98 -818.19 -2.44 -16.32 16 19 C 0.50 11.82 7.70 87.66 0.68 12.49 16 20 O -0.60 -20.73 15.42 -3.05 -0.05 -20.78 16 21 C -0.12 -1.33 4.05 29.85 0.12 -1.21 16 22 C -0.14 -2.05 4.96 30.59 0.15 -1.90 16 23 C 0.06 0.57 7.55 71.98 0.54 1.11 16 24 F -0.24 -4.41 17.36 44.97 0.78 -3.63 16 25 C 0.10 3.23 5.67 86.31 0.49 3.72 16 26 C 0.51 21.86 6.98 87.79 0.61 22.48 16 27 O -0.58 -26.66 12.46 -3.03 -0.04 -26.69 16 28 C 0.18 8.84 5.13 85.44 0.44 9.28 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.09 2.99 7.96 -2.39 -0.02 2.97 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 2.29 7.94 -2.39 -0.02 2.28 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.83 6.09 -2.39 -0.01 1.82 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.13 0.56 5.93 -2.38 -0.01 0.55 16 40 H 0.13 0.66 7.94 -2.39 -0.02 0.64 16 41 H 0.14 0.45 7.69 -2.39 -0.02 0.43 16 42 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 43 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 44 H 0.10 0.45 8.14 -2.38 -0.02 0.44 16 45 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.05 2.08 7.02 -2.39 -0.02 2.06 16 47 H 0.07 2.63 5.67 -2.38 -0.01 2.62 16 48 H 0.07 4.33 6.42 -2.39 -0.02 4.32 16 49 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -78.92 381.94 3.51 -75.41 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.95 Total: 13.79 kcal Atomic # 6 Polarization: 34.25 SS G_CDS: 6.41 Total: 40.66 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -6.56 Total: -125.53 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.08 Total: -47.47 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -78.92 3.51 -75.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131721659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.949 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds