Wall clock time and date at job start Wed Apr 1 2020 00:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39628 * 120.15200 * 232.48121 * 3 2 1 5 5 C 1.37943 * 119.84893 * 179.97438 * 4 3 2 6 6 C 1.38362 * 120.15061 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.84878 * 179.97438 * 6 5 4 8 8 N 1.46508 * 109.47106 * 95.35247 * 7 6 5 9 9 C 1.34774 * 120.00379 * 96.21806 * 8 7 6 10 10 O 1.21283 * 119.99965 * 184.79807 * 9 8 7 11 11 C 1.50703 * 119.99635 * 4.79564 * 9 8 7 12 12 C 1.50700 * 109.46624 * 185.74144 * 11 9 8 13 13 H 1.08001 * 120.00706 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99792 * 180.02562 * 12 11 9 15 15 N 1.31517 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00217 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46839 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47043 * 119.99691 * 16 14 12 19 19 H 1.48494 * 109.47193 * 240.00208 * 16 14 12 20 20 C 1.46499 * 119.99469 * 276.21836 * 8 7 6 21 21 H 1.09000 * 109.47415 * 0.21453 * 20 8 7 22 22 C 1.52999 * 109.47216 * 120.21919 * 20 8 7 23 23 C 1.52998 * 109.47281 * 179.97438 * 22 20 8 24 24 C 1.53001 * 109.47320 * 299.99974 * 23 22 20 25 25 H 1.09002 * 109.47159 * 300.00285 * 24 23 22 26 26 N 1.46900 * 109.47433 * 179.97438 * 24 23 22 27 27 C 1.53007 * 109.47099 * 59.99674 * 24 23 22 28 28 C 1.52998 * 109.47301 * 300.00338 * 27 24 23 29 29 C 1.38368 * 120.30736 * 0.27166 * 6 5 4 30 30 C 1.37953 * 120.14522 * 359.49584 * 29 6 5 31 31 H 1.08000 * 120.07939 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.92681 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47251 * 335.34928 * 7 6 5 34 34 H 1.09008 * 109.47191 * 215.34653 * 7 6 5 35 35 H 1.08997 * 109.47324 * 305.74105 * 11 9 8 36 36 H 1.09002 * 109.47015 * 65.74464 * 11 9 8 37 37 H 0.96994 * 120.00610 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.46828 * 299.99472 * 22 20 8 39 39 H 1.09002 * 109.46812 * 59.99604 * 22 20 8 40 40 H 1.09000 * 109.47099 * 59.99688 * 23 22 20 41 41 H 1.08996 * 109.47378 * 179.97438 * 23 22 20 42 42 H 1.00894 * 110.99960 * 179.97438 * 26 24 23 43 43 H 1.00896 * 110.99954 * 303.95811 * 26 24 23 44 44 H 1.09002 * 109.46616 * 60.00279 * 27 24 23 45 45 H 1.09005 * 109.47088 * 179.97438 * 27 24 23 46 46 H 1.09000 * 109.47099 * 300.00084 * 28 27 24 47 47 H 1.08996 * 109.47378 * 179.97438 * 28 27 24 48 48 H 1.07994 * 119.92995 * 179.72116 * 29 6 5 49 49 H 1.07997 * 120.07573 * 180.25243 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.7363 0.9576 5 6 4.6485 0.7320 0.9522 6 6 5.3374 0.0006 0.0010 7 6 6.8444 0.0012 0.0009 8 7 7.3333 -1.1672 0.7373 9 6 7.6776 -2.2875 0.0720 10 8 7.9991 -3.2828 0.6860 11 6 7.6630 -2.3034 -1.4349 12 6 7.9475 -3.6998 -1.9251 13 1 8.1219 -4.4960 -1.2165 14 6 7.9863 -3.9607 -3.2784 15 7 7.7745 -2.9912 -4.1415 16 14 8.3396 -5.6914 -3.8862 17 1 8.5401 -6.5931 -2.7234 18 1 7.1925 -6.1757 -4.6954 19 1 9.5664 -5.6814 -4.7228 20 6 7.4478 -1.1176 2.1970 21 1 7.1231 -0.1402 2.5540 22 6 6.5666 -2.2050 2.8150 23 6 6.6867 -2.1536 4.3394 24 6 8.1436 -2.3867 4.7443 25 1 8.4682 -3.3640 4.3870 26 7 8.2591 -2.3368 6.2079 27 6 9.0250 -1.2993 4.1263 28 6 8.9048 -1.3506 2.6019 29 6 4.6491 -0.7266 -0.9541 30 6 3.2696 -0.7350 -0.9572 31 1 2.7326 1.3066 1.7014 32 1 5.1919 1.3002 1.6925 33 1 7.2073 0.9106 0.4799 34 1 7.2078 -0.0385 -1.0260 35 1 6.6836 -1.9854 -1.7922 36 1 8.4262 -1.6231 -1.8128 37 1 7.8013 -3.1748 -5.0935 38 1 5.5287 -2.0391 2.5262 39 1 6.8914 -3.1823 2.4579 40 1 6.3622 -1.1763 4.6967 41 1 6.0586 -2.9280 4.7796 42 1 9.2126 -2.4884 6.5008 43 1 7.9039 -1.4642 6.5691 44 1 8.7004 -0.3220 4.4837 45 1 10.0629 -1.4650 4.4152 46 1 9.2293 -2.3279 2.2446 47 1 9.5323 -0.5757 2.1617 48 1 5.1930 -1.2917 -1.6964 49 1 2.7336 -1.3062 -1.7007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:14 Heat of formation + Delta-G solvation = 4.200494 kcal Electronic energy + Delta-G solvation = -30205.198665 eV Core-core repulsion = 26324.301563 eV Total energy + Delta-G solvation = -3880.897103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.28151 -39.26059 -37.77457 -36.60397 -35.12557 -33.41478 -32.75875 -31.29496 -31.11113 -30.69026 -29.12721 -27.43428 -26.07424 -23.78338 -22.76099 -22.64862 -22.35789 -21.63974 -20.08499 -18.97694 -18.28363 -16.68110 -16.28369 -15.99436 -15.78433 -15.56632 -15.40440 -14.84176 -14.71873 -14.49975 -14.16151 -14.08429 -14.06066 -13.59828 -13.48605 -13.04872 -12.97799 -12.90178 -12.82744 -12.52969 -12.28678 -12.12714 -12.02314 -12.01855 -11.73944 -11.39546 -11.31832 -11.06050 -10.98501 -10.93634 -10.77968 -10.59769 -10.38345 -10.17922 -9.97573 -9.27338 -9.06435 -8.88534 -8.75744 -8.49226 -8.48572 -8.18899 -6.12518 -4.11273 0.66961 1.30906 2.57343 2.82412 3.29426 3.37574 3.43778 3.51778 3.57549 3.80804 3.90977 4.42443 4.46737 4.67374 4.72263 4.76326 4.80428 4.87553 5.08133 5.17010 5.23207 5.25545 5.31503 5.33785 5.42492 5.51967 5.56706 5.57766 5.66894 5.74962 5.80923 5.83704 5.95165 5.96289 6.05891 6.12286 6.14568 6.26077 6.30310 6.36701 6.49730 6.52571 6.62391 6.76144 7.03140 7.07542 7.17617 7.24975 7.31430 7.38548 7.88335 7.91545 8.29904 8.99607 9.14191 9.54401 10.99541 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.005930 B = 0.005128 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4720.744165 B = 5458.417542 C = 9143.224001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.261 3.739 3 C -0.038 4.038 4 C -0.075 4.075 5 C -0.111 4.111 6 C -0.068 4.068 7 C 0.145 3.855 8 N -0.622 5.622 9 C 0.519 3.481 10 O -0.531 6.531 11 C 0.001 3.999 12 C -0.506 4.506 13 H 0.075 0.925 14 C 0.057 3.943 15 N -0.900 5.900 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.158 3.842 21 H 0.072 0.928 22 C -0.136 4.136 23 C -0.103 4.103 24 C 0.088 3.912 25 H 0.084 0.916 26 N -0.847 5.847 27 C -0.144 4.144 28 C -0.132 4.132 29 C -0.101 4.101 30 C -0.066 4.066 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.338 0.662 43 H 0.335 0.665 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.058 0.942 48 H 0.151 0.849 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 11.259 13.532 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.054 4.054 3 C -0.041 4.041 4 C -0.096 4.096 5 C -0.130 4.130 6 C -0.070 4.070 7 C 0.021 3.979 8 N -0.357 5.357 9 C 0.311 3.689 10 O -0.406 6.406 11 C -0.037 4.037 12 C -0.545 4.545 13 H 0.093 0.907 14 C -0.144 4.144 15 N -0.539 5.539 16 Si 0.724 3.276 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.055 3.945 21 H 0.090 0.910 22 C -0.175 4.175 23 C -0.141 4.141 24 C -0.023 4.023 25 H 0.102 0.898 26 N -0.374 5.374 27 C -0.184 4.184 28 C -0.171 4.171 29 C -0.119 4.119 30 C -0.087 4.087 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.077 0.923 48 H 0.168 0.832 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.549 10.080 13.674 17.355 hybrid contribution 1.151 0.153 -0.679 1.345 sum -2.398 10.233 12.995 16.713 Atomic orbital electron populations 1.81233 1.12176 1.08749 1.08280 1.25813 0.92765 0.93400 0.93440 1.16026 0.84059 1.03763 1.00298 1.21050 0.94245 0.97426 0.96875 1.20937 0.93360 0.99975 0.98706 1.20674 0.97102 0.95042 0.94183 1.20534 0.88500 0.89151 0.99690 1.48364 1.67172 1.14417 1.05726 1.21975 0.73871 0.80669 0.92373 1.90484 1.46999 1.33016 1.70103 1.19414 0.99305 1.00210 0.84818 1.21192 1.47549 0.93945 0.91767 0.90700 1.24961 0.95270 0.97366 0.96769 1.69937 1.50315 1.31745 1.01952 0.86444 0.77800 0.84559 0.78769 1.19506 1.21043 1.21049 1.20866 0.94964 0.98385 0.80328 0.90973 1.21981 0.99463 1.02130 0.93918 1.21450 0.95479 1.01383 0.95799 1.21531 0.95534 0.98847 0.86401 0.89795 1.58950 1.26845 1.41256 1.10390 1.22308 0.99969 0.99397 0.96697 1.21878 0.96549 1.04167 0.94524 1.21537 0.93577 0.97773 0.99005 1.21249 0.94465 0.96374 0.96613 0.85390 0.85331 0.90174 0.87760 0.93347 0.93453 0.92937 0.92090 0.88789 0.92759 0.91389 0.84938 0.85278 0.92560 0.92264 0.89392 0.92302 0.83167 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.21 18.54 41.84 0.78 -5.43 16 2 C 0.26 3.25 15.33 -22.47 -0.34 2.90 16 3 C -0.04 -0.42 5.73 -106.93 -0.61 -1.03 16 4 C -0.08 -0.70 9.76 -39.17 -0.38 -1.08 16 5 C -0.11 -1.02 9.66 -39.64 -0.38 -1.41 16 6 C -0.07 -0.77 5.46 -104.53 -0.57 -1.34 16 7 C 0.14 1.72 5.33 -5.19 -0.03 1.70 16 8 N -0.62 -9.19 2.41 -167.46 -0.40 -9.59 16 9 C 0.52 10.34 7.06 -10.98 -0.08 10.27 16 10 O -0.53 -12.11 11.71 5.56 0.07 -12.05 16 11 C 0.00 0.03 3.85 -29.03 -0.11 -0.08 16 12 C -0.51 -13.58 8.92 -34.44 -0.31 -13.89 16 13 H 0.07 2.13 6.77 -52.49 -0.36 1.78 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -24.55 13.29 55.43 0.74 -23.81 16 16 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 C 0.16 2.01 2.54 -67.93 -0.17 1.84 16 21 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 22 C -0.14 -1.86 5.13 -26.73 -0.14 -1.99 16 23 C -0.10 -1.16 5.46 -26.73 -0.15 -1.30 16 24 C 0.09 0.97 3.25 -67.71 -0.22 0.75 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 26 N -0.85 -7.87 9.25 -4.66 -0.04 -7.92 16 27 C -0.14 -1.48 5.49 -26.73 -0.15 -1.62 16 28 C -0.13 -1.72 5.13 -26.73 -0.14 -1.85 16 29 C -0.10 -1.30 9.57 -39.64 -0.38 -1.68 16 30 C -0.07 -0.78 9.76 -39.17 -0.38 -1.17 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 34 H 0.10 1.36 6.26 -51.92 -0.33 1.04 16 35 H 0.05 1.06 4.81 -51.93 -0.25 0.81 16 36 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.63 6.00 -51.93 -0.31 1.32 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.34 2.71 9.04 -39.30 -0.36 2.36 16 43 H 0.34 2.61 8.98 -39.29 -0.35 2.26 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.46 6.35 -51.93 -0.33 1.13 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.15 2.27 5.34 -52.49 -0.28 1.99 16 49 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 395.67 15.07 5.96 5.96 Total: -1.00 -30.39 395.67 -9.72 -40.11 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.15 Total: 6.12 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -4.64 Total: -9.56 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 1.07 Total: -46.76 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.39 -9.72 -40.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.310 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds