Wall clock time and date at job start Wed Apr 1 2020 00:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39628 * 120.15200 * 232.48121 * 3 2 1 5 5 C 1.37943 * 119.84893 * 179.97438 * 4 3 2 6 6 C 1.38362 * 120.15061 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.84878 * 179.97438 * 6 5 4 8 8 N 1.46508 * 109.47106 * 95.35247 * 7 6 5 9 9 C 1.34774 * 120.00379 * 96.21806 * 8 7 6 10 10 O 1.21283 * 119.99965 * 184.79807 * 9 8 7 11 11 C 1.50703 * 119.99635 * 4.79564 * 9 8 7 12 12 C 1.50700 * 109.46624 * 185.74144 * 11 9 8 13 13 H 1.08001 * 120.00706 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99792 * 180.02562 * 12 11 9 15 15 N 1.31517 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00217 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46839 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47043 * 119.99691 * 16 14 12 19 19 H 1.48494 * 109.47193 * 240.00208 * 16 14 12 20 20 C 1.46499 * 119.99469 * 276.21836 * 8 7 6 21 21 H 1.09000 * 109.47415 * 0.21453 * 20 8 7 22 22 C 1.52999 * 109.47216 * 120.21919 * 20 8 7 23 23 C 1.52998 * 109.47281 * 179.97438 * 22 20 8 24 24 C 1.53001 * 109.47320 * 299.99974 * 23 22 20 25 25 H 1.09002 * 109.47159 * 300.00285 * 24 23 22 26 26 N 1.46900 * 109.47433 * 179.97438 * 24 23 22 27 27 C 1.53007 * 109.47099 * 59.99674 * 24 23 22 28 28 C 1.52998 * 109.47301 * 300.00338 * 27 24 23 29 29 C 1.38368 * 120.30736 * 0.27166 * 6 5 4 30 30 C 1.37953 * 120.14522 * 359.49584 * 29 6 5 31 31 H 1.08000 * 120.07939 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.92681 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47251 * 335.34928 * 7 6 5 34 34 H 1.09008 * 109.47191 * 215.34653 * 7 6 5 35 35 H 1.08997 * 109.47324 * 305.74105 * 11 9 8 36 36 H 1.09002 * 109.47015 * 65.74464 * 11 9 8 37 37 H 0.96994 * 120.00610 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.46828 * 299.99472 * 22 20 8 39 39 H 1.09002 * 109.46812 * 59.99604 * 22 20 8 40 40 H 1.09000 * 109.47099 * 59.99688 * 23 22 20 41 41 H 1.08996 * 109.47378 * 179.97438 * 23 22 20 42 42 H 1.00894 * 110.99960 * 179.97438 * 26 24 23 43 43 H 1.00896 * 110.99954 * 303.95811 * 26 24 23 44 44 H 1.09002 * 109.46616 * 60.00279 * 27 24 23 45 45 H 1.09005 * 109.47088 * 179.97438 * 27 24 23 46 46 H 1.09000 * 109.47099 * 300.00084 * 28 27 24 47 47 H 1.08996 * 109.47378 * 179.97438 * 28 27 24 48 48 H 1.07994 * 119.92995 * 179.72116 * 29 6 5 49 49 H 1.07997 * 120.07573 * 180.25243 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.7363 0.9576 5 6 4.6485 0.7320 0.9522 6 6 5.3374 0.0006 0.0010 7 6 6.8444 0.0012 0.0009 8 7 7.3333 -1.1672 0.7373 9 6 7.6776 -2.2875 0.0720 10 8 7.9991 -3.2828 0.6860 11 6 7.6630 -2.3034 -1.4349 12 6 7.9475 -3.6998 -1.9251 13 1 8.1219 -4.4960 -1.2165 14 6 7.9863 -3.9607 -3.2784 15 7 7.7745 -2.9912 -4.1415 16 14 8.3396 -5.6914 -3.8862 17 1 8.5401 -6.5931 -2.7234 18 1 7.1925 -6.1757 -4.6954 19 1 9.5664 -5.6814 -4.7228 20 6 7.4478 -1.1176 2.1970 21 1 7.1231 -0.1402 2.5540 22 6 6.5666 -2.2050 2.8150 23 6 6.6867 -2.1536 4.3394 24 6 8.1436 -2.3867 4.7443 25 1 8.4682 -3.3640 4.3870 26 7 8.2591 -2.3368 6.2079 27 6 9.0250 -1.2993 4.1263 28 6 8.9048 -1.3506 2.6019 29 6 4.6491 -0.7266 -0.9541 30 6 3.2696 -0.7350 -0.9572 31 1 2.7326 1.3066 1.7014 32 1 5.1919 1.3002 1.6925 33 1 7.2073 0.9106 0.4799 34 1 7.2078 -0.0385 -1.0260 35 1 6.6836 -1.9854 -1.7922 36 1 8.4262 -1.6231 -1.8128 37 1 7.8013 -3.1748 -5.0935 38 1 5.5287 -2.0391 2.5262 39 1 6.8914 -3.1823 2.4579 40 1 6.3622 -1.1763 4.6967 41 1 6.0586 -2.9280 4.7796 42 1 9.2126 -2.4884 6.5008 43 1 7.9039 -1.4642 6.5691 44 1 8.7004 -0.3220 4.4837 45 1 10.0629 -1.4650 4.4152 46 1 9.2293 -2.3279 2.2446 47 1 9.5323 -0.5757 2.1617 48 1 5.1930 -1.2917 -1.6964 49 1 2.7336 -1.3062 -1.7007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:13 Heat of formation + Delta-G solvation = -13.434549 kcal Electronic energy + Delta-G solvation = -30205.963378 eV Core-core repulsion = 26324.301563 eV Total energy + Delta-G solvation = -3881.661816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45739 -40.22379 -38.94220 -37.67157 -36.35148 -35.13067 -34.02224 -32.31216 -31.99216 -31.65391 -30.84710 -28.45732 -27.27681 -25.48974 -23.68595 -23.60964 -23.35077 -22.79319 -21.03968 -19.89563 -19.63979 -18.49220 -17.55678 -17.29052 -16.82682 -16.53169 -16.38275 -16.30049 -15.91961 -15.77522 -15.27024 -15.11950 -15.05694 -14.61823 -14.49835 -14.39599 -14.08558 -14.03739 -13.96399 -13.83963 -13.58355 -13.19945 -13.11299 -13.06581 -12.92628 -12.75924 -12.68761 -12.47601 -12.38972 -12.03023 -11.96247 -11.88902 -11.86951 -11.41438 -11.26090 -11.15616 -10.56667 -10.08758 -9.90150 -9.78234 -9.50851 -9.42718 -8.21539 -6.25720 -0.23385 0.47169 1.37797 1.40576 1.53359 1.58516 1.83195 2.02263 2.31863 2.47584 2.86392 2.98562 3.14379 3.64270 3.75738 3.81819 3.88490 3.95614 4.01243 4.08668 4.27128 4.34724 4.38143 4.43002 4.47493 4.55199 4.60785 4.64582 4.66180 4.77400 4.82569 4.90031 4.94904 5.05917 5.11460 5.12809 5.21595 5.28711 5.29391 5.33487 5.37925 5.46464 5.48261 5.55827 5.63871 5.77158 5.92819 6.00178 6.14840 6.31103 6.41431 6.66714 6.71102 6.87930 7.40875 7.63365 8.89937 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.005930 B = 0.005128 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4720.744165 B = 5458.417542 C = 9143.224001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.281 3.719 3 C -0.042 4.042 4 C -0.060 4.060 5 C -0.095 4.095 6 C -0.071 4.071 7 C 0.139 3.861 8 N -0.609 5.609 9 C 0.520 3.480 10 O -0.569 6.569 11 C 0.005 3.995 12 C -0.529 4.529 13 H 0.049 0.951 14 C 0.017 3.983 15 N -0.919 5.919 16 Si 0.950 3.050 17 H -0.279 1.279 18 H -0.275 1.275 19 H -0.275 1.275 20 C 0.157 3.843 21 H 0.121 0.879 22 C -0.130 4.130 23 C -0.094 4.094 24 C 0.092 3.908 25 H 0.047 0.953 26 N -0.849 5.849 27 C -0.132 4.132 28 C -0.130 4.130 29 C -0.123 4.123 30 C -0.074 4.074 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.346 0.654 43 H 0.349 0.651 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.040 0.960 47 H 0.066 0.934 48 H 0.117 0.883 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 14.371 16.139 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.033 4.033 3 C -0.046 4.046 4 C -0.080 4.080 5 C -0.113 4.113 6 C -0.073 4.073 7 C 0.017 3.983 8 N -0.341 5.341 9 C 0.311 3.689 10 O -0.448 6.448 11 C -0.034 4.034 12 C -0.567 4.567 13 H 0.067 0.933 14 C -0.182 4.182 15 N -0.559 5.559 16 Si 0.776 3.224 17 H -0.204 1.204 18 H -0.200 1.200 19 H -0.200 1.200 20 C 0.055 3.945 21 H 0.138 0.862 22 C -0.169 4.169 23 C -0.132 4.132 24 C -0.020 4.020 25 H 0.065 0.935 26 N -0.378 5.378 27 C -0.172 4.172 28 C -0.170 4.170 29 C -0.141 4.141 30 C -0.095 4.095 31 H 0.178 0.822 32 H 0.189 0.811 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.134 0.866 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.820 13.242 16.290 21.337 hybrid contribution 1.235 -0.802 -1.482 2.089 sum -2.585 12.440 14.808 19.512 Atomic orbital electron populations 1.81255 1.13292 1.10166 1.09623 1.25949 0.92820 0.92241 0.92288 1.16071 0.83246 1.04403 1.00889 1.21428 0.94445 0.96002 0.96143 1.21288 0.93297 0.98704 0.98060 1.20640 0.96611 0.95462 0.94577 1.20798 0.89061 0.89401 0.99075 1.48190 1.65431 1.13503 1.06970 1.21393 0.74357 0.81826 0.91323 1.90486 1.48970 1.34909 1.70392 1.19247 0.99040 0.97670 0.87464 1.21382 1.48044 0.95454 0.91843 0.93270 1.25589 0.95115 1.00585 0.96863 1.69997 1.50662 1.33027 1.02195 0.85624 0.78169 0.80648 0.77984 1.20384 1.20046 1.20033 1.21133 0.94772 1.00219 0.78363 0.86157 1.21853 0.99216 1.00040 0.95840 1.21365 0.95423 1.02769 0.93634 1.21339 0.95572 0.97474 0.87587 0.93491 1.58858 1.27705 1.42288 1.08992 1.22224 1.00211 1.00492 0.94226 1.21819 0.96705 1.01736 0.96705 1.21308 0.94014 0.99118 0.99692 1.21196 0.94115 0.96950 0.97239 0.82184 0.81140 0.85424 0.89703 0.92795 0.94649 0.92595 0.92230 0.93609 0.89502 0.92469 0.84056 0.83709 0.89386 0.91892 0.94081 0.91570 0.86551 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.15 18.54 19.00 0.35 -12.79 16 2 C 0.28 6.62 15.33 88.33 1.35 7.97 16 3 C -0.04 -0.85 5.73 -21.36 -0.12 -0.97 16 4 C -0.06 -0.85 9.76 22.54 0.22 -0.63 16 5 C -0.10 -1.27 9.66 22.23 0.21 -1.06 16 6 C -0.07 -1.45 5.46 -19.80 -0.11 -1.56 16 7 C 0.14 3.00 5.33 85.63 0.46 3.46 16 8 N -0.61 -17.50 2.41 -802.11 -1.93 -19.43 16 9 C 0.52 21.75 7.06 87.66 0.62 22.37 16 10 O -0.57 -27.87 11.71 -3.04 -0.04 -27.91 16 11 C 0.00 0.23 3.85 29.10 0.11 0.34 16 12 C -0.53 -30.00 8.92 25.60 0.23 -29.78 16 13 H 0.05 3.00 6.77 -2.91 -0.02 2.98 16 14 C 0.02 0.97 5.46 84.65 0.46 1.43 16 15 N -0.92 -51.52 13.29 21.45 0.28 -51.24 16 16 Si 0.95 44.73 29.54 68.60 2.03 46.76 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.16 3.61 2.54 44.99 0.11 3.73 16 21 H 0.12 1.71 7.88 -2.39 -0.02 1.69 16 22 C -0.13 -3.44 5.13 30.59 0.16 -3.28 16 23 C -0.09 -1.89 5.46 30.59 0.17 -1.72 16 24 C 0.09 1.88 3.25 44.92 0.15 2.03 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 N -0.85 -13.61 9.25 -168.67 -1.56 -15.17 16 27 C -0.13 -2.33 5.49 30.60 0.17 -2.16 16 28 C -0.13 -3.21 5.13 30.60 0.16 -3.06 16 29 C -0.12 -3.22 9.57 22.23 0.21 -3.01 16 30 C -0.07 -1.76 9.76 22.54 0.22 -1.54 16 31 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.13 1.61 7.96 -2.39 -0.02 1.59 16 34 H 0.08 2.21 6.26 -2.38 -0.01 2.19 16 35 H 0.05 2.52 4.81 -2.39 -0.01 2.51 16 36 H 0.04 1.75 7.88 -2.39 -0.02 1.74 16 37 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 1.68 6.00 -2.39 -0.01 1.66 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.35 4.77 9.04 -89.70 -0.81 3.96 16 43 H 0.35 4.02 8.98 -89.70 -0.81 3.21 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.04 1.42 6.35 -2.39 -0.02 1.40 16 47 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.12 3.84 5.34 -2.91 -0.02 3.83 16 49 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -72.52 395.67 3.29 -69.23 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.62 Total: 17.98 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.78 Total: -7.43 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -2.86 Total: -98.63 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.04 Total: -27.91 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -72.52 3.29 -69.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.792 kcal (2) G-P(sol) polarization free energy of solvation -72.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds