Wall clock time and date at job start Wed Apr 1 2020 00:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99508 * 2 1 4 4 H 1.48500 * 109.47026 * 239.99699 * 3 2 1 5 5 H 1.48500 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47447 * 119.99884 * 3 2 1 7 7 C 1.38803 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00236 * 177.76622 * 7 2 1 9 9 N 1.36940 * 120.00195 * 357.76769 * 7 2 1 10 10 C 1.46998 * 121.37576 * 333.88063 * 9 7 2 11 11 C 1.50320 * 109.16633 * 222.96833 * 10 9 7 12 12 C 1.29448 * 123.65291 * 349.01670 * 11 10 9 13 13 C 1.50699 * 117.69838 * 180.85820 * 12 11 10 14 14 C 1.53003 * 109.47018 * 95.00227 * 13 12 11 15 15 N 1.46492 * 109.47278 * 180.02562 * 14 13 12 16 16 C 1.34781 * 120.00445 * 180.02562 * 15 14 13 17 17 O 1.21285 * 119.99393 * 4.42569 * 16 15 14 18 18 C 1.50696 * 120.00373 * 184.42896 * 16 15 14 19 19 C 1.50692 * 115.55365 * 66.53143 * 18 16 15 20 20 C 1.38678 * 120.41497 * 31.12912 * 19 18 16 21 21 C 1.38631 * 118.41747 * 180.02562 * 20 19 18 22 22 C 1.38223 * 119.16247 * 359.97438 * 21 20 19 23 23 N 1.31857 * 120.76790 * 0.02562 * 22 21 20 24 24 C 1.31884 * 121.72134 * 359.97438 * 23 22 21 25 25 C 1.53000 * 117.49693 * 212.20542 * 18 16 15 26 26 C 1.53001 * 117.49712 * 280.86108 * 18 16 15 27 27 C 1.49972 * 124.60825 * 1.14211 * 12 11 10 28 28 C 1.47339 * 121.37554 * 153.89595 * 9 7 2 29 29 H 0.96998 * 120.00519 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.52825 * 103.05657 * 10 9 7 31 31 H 1.09001 * 109.52065 * 342.87325 * 10 9 7 32 32 H 1.08000 * 118.17629 * 168.99582 * 11 10 9 33 33 H 1.08997 * 109.47079 * 335.00360 * 13 12 11 34 34 H 1.09002 * 109.47732 * 215.00183 * 13 12 11 35 35 H 1.08997 * 109.47087 * 60.00138 * 14 13 12 36 36 H 1.09002 * 109.46834 * 300.00506 * 14 13 12 37 37 H 0.97003 * 120.00456 * 0.02562 * 15 14 13 38 38 H 1.07997 * 120.79081 * 0.04301 * 20 19 18 39 39 H 1.08000 * 120.42026 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.61755 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.61682 * 179.97438 * 24 23 22 42 42 H 1.09000 * 117.49765 * 214.99848 * 25 18 16 43 43 H 1.09001 * 117.50195 * 0.02562 * 25 18 16 44 44 H 1.09003 * 117.50174 * 359.97438 * 26 18 16 45 45 H 1.09004 * 117.50016 * 144.99936 * 26 18 16 46 46 H 1.09008 * 109.31269 * 101.00945 * 27 12 11 47 47 H 1.08999 * 109.31376 * 220.43490 * 27 12 11 48 48 H 1.08992 * 109.78275 * 237.79149 * 28 9 7 49 49 H 1.08997 * 109.77887 * 358.60199 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6967 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0897 -1.2024 -0.0359 9 7 1.3265 -2.3876 0.0473 10 6 -0.0126 -2.4756 0.6472 11 6 -0.0945 -3.7165 1.4916 12 6 0.8006 -4.6515 1.4814 13 6 0.5736 -5.8483 2.3686 14 6 -0.0954 -6.9623 1.5609 15 7 -0.3167 -8.1255 2.4234 16 6 -0.8970 -9.2346 1.9236 17 8 -1.1629 -9.2998 0.7420 18 6 -1.2156 -10.3934 2.8327 19 6 -2.2754 -10.1323 3.8716 20 6 -3.3085 -9.2441 3.6128 21 6 -4.2608 -9.0346 4.5983 22 6 -4.1500 -9.7135 5.7972 23 7 -3.1538 -10.5510 6.0086 24 6 -2.2301 -10.7748 5.0942 25 6 -1.1429 -11.8003 2.2358 26 6 -0.0660 -11.3277 3.2156 27 6 2.0508 -4.6249 0.6533 28 6 1.9027 -3.6276 -0.5014 29 1 -0.4851 0.8400 -0.0004 30 1 -0.7631 -2.5218 -0.1420 31 1 -0.1911 -1.5989 1.2698 32 1 -0.9475 -3.8344 2.1434 33 1 -0.0706 -5.5663 3.2013 34 1 1.5302 -6.2025 2.7529 35 1 0.5488 -7.2444 0.7281 36 1 -1.0520 -6.6081 1.1765 37 1 -0.0456 -8.0977 3.3543 38 1 -3.3699 -8.7282 2.6661 39 1 -5.0794 -8.3502 4.4310 40 1 -4.8881 -9.5561 6.5698 41 1 -1.4286 -11.4676 5.3037 42 1 -1.8616 -12.5370 2.5946 43 1 -0.8642 -11.8877 1.1856 44 1 0.9206 -11.1044 2.8095 45 1 -0.0763 -11.7534 4.2190 46 1 2.8928 -4.3329 1.2810 47 1 2.2353 -5.6193 0.2470 48 1 1.2401 -4.0364 -1.2641 49 1 2.8809 -3.4196 -0.9348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160986018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:18 Heat of formation + Delta-G solvation = 43.064804 kcal Electronic energy + Delta-G solvation = -28672.644792 eV Core-core repulsion = 24793.432972 eV Total energy + Delta-G solvation = -3879.211820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86214 -40.55226 -39.49910 -37.80151 -36.72054 -35.13595 -33.46464 -33.13626 -31.82400 -31.47026 -30.29855 -27.46852 -26.05482 -24.71208 -24.65621 -24.13686 -23.26666 -23.09996 -22.46715 -20.80197 -19.48042 -18.74983 -17.98913 -17.66275 -17.19656 -17.02876 -16.91192 -16.57757 -16.05044 -15.79718 -15.58468 -15.39260 -15.21662 -15.07661 -14.85865 -14.72726 -14.27131 -14.04482 -13.85174 -13.80221 -13.38885 -13.26862 -13.02219 -12.89016 -12.68830 -12.62689 -12.42398 -12.37286 -12.21595 -12.10191 -11.86795 -11.76307 -11.70526 -11.26270 -11.04654 -10.74441 -10.71881 -10.39397 -10.18737 -9.83943 -9.48348 -8.71804 -7.85685 -5.34345 0.05172 0.24154 1.39226 1.43050 1.46209 1.48976 1.55341 2.06697 2.49794 2.54968 2.94604 3.30199 3.30621 3.56087 3.61058 3.68407 3.73000 3.86968 3.91436 3.94307 4.01488 4.07842 4.09518 4.26556 4.29138 4.45673 4.54679 4.55809 4.62759 4.67086 4.72264 4.85010 4.86834 4.89799 4.93364 4.95441 5.05059 5.11765 5.14535 5.17387 5.24307 5.24679 5.34833 5.44231 5.56383 5.60810 5.68653 5.87602 6.28629 6.37491 6.45131 6.96017 7.12740 7.14556 7.83026 8.37661 9.20127 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.002044 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.751034 B =13698.521494 C =14582.624964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.058 4.058 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.256 4.256 8 H 0.072 0.928 9 N -0.618 5.618 10 C 0.202 3.798 11 C -0.174 4.174 12 C -0.123 4.123 13 C -0.077 4.077 14 C 0.133 3.867 15 N -0.708 5.708 16 C 0.550 3.450 17 O -0.579 6.579 18 C -0.135 4.135 19 C -0.092 4.092 20 C -0.082 4.082 21 C -0.165 4.165 22 C 0.089 3.911 23 N -0.500 5.500 24 C 0.101 3.899 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.087 4.087 28 C 0.135 3.865 29 H 0.249 0.751 30 H -0.001 1.001 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.415 0.585 38 H 0.117 0.883 39 H 0.155 0.845 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.137 0.863 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.018 0.982 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 -25.698 13.190 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.252 4.252 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.386 4.386 8 H 0.090 0.910 9 N -0.342 5.342 10 C 0.077 3.923 11 C -0.193 4.193 12 C -0.124 4.124 13 C -0.115 4.115 14 C 0.010 3.990 15 N -0.359 5.359 16 C 0.337 3.663 17 O -0.458 6.458 18 C -0.139 4.139 19 C -0.094 4.094 20 C -0.109 4.109 21 C -0.184 4.184 22 C -0.067 4.067 23 N -0.209 5.209 24 C -0.055 4.055 25 C -0.174 4.174 26 C -0.166 4.166 27 C -0.125 4.125 28 C 0.010 3.990 29 H 0.059 0.941 30 H 0.016 0.984 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.251 0.749 38 H 0.135 0.865 39 H 0.172 0.828 40 H 0.197 0.803 41 H 0.198 0.802 42 H 0.137 0.863 43 H 0.114 0.886 44 H 0.130 0.870 45 H 0.155 0.845 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.036 0.964 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.529 -25.996 13.153 29.347 hybrid contribution -0.096 2.040 -1.060 2.301 sum -3.625 -23.956 12.093 27.079 Atomic orbital electron populations 1.70130 1.06562 1.25659 1.56785 1.25920 0.96468 1.01492 1.01319 0.85218 0.77342 0.78815 0.78318 1.20228 1.22005 1.20150 1.19538 0.90759 0.84363 1.43954 0.91032 1.44410 1.17156 1.05167 1.67487 1.19512 0.85351 0.94252 0.93159 1.22898 0.99251 0.96855 1.00302 1.20551 0.96611 0.95615 0.99650 1.20784 1.01992 0.91942 0.96778 1.21197 0.99861 0.84624 0.93367 1.45875 1.61166 1.13656 1.15194 1.19760 0.76177 0.83156 0.87245 1.90719 1.54600 1.82027 1.18448 1.19928 1.02136 0.91705 1.00107 1.19723 0.95495 0.99109 0.95121 1.21544 0.93687 0.96314 0.99321 1.22387 1.00321 1.01393 0.94316 1.23233 0.95538 0.91303 0.96602 1.67802 1.03294 1.16485 1.33279 1.22977 0.97100 0.97636 0.87807 1.23172 1.02249 0.91981 1.00007 1.23408 0.93210 0.97782 1.02197 1.20746 0.95476 0.99448 0.96865 1.21186 0.96956 0.86822 0.94034 0.94140 0.98350 0.91227 0.87246 0.90193 0.88926 0.92041 0.93267 0.74872 0.86463 0.82750 0.80277 0.80212 0.86265 0.88581 0.87021 0.84499 0.91392 0.89676 0.96352 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.67 10.50 21.65 0.23 -56.44 16 2 C -0.06 -3.29 5.28 84.86 0.45 -2.85 16 3 Si 0.98 45.40 29.55 68.60 2.03 47.42 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.26 -14.37 9.74 84.03 0.82 -13.55 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 9 N -0.62 -32.17 3.02 -703.07 -2.12 -34.29 16 10 C 0.20 10.29 5.22 85.42 0.45 10.73 16 11 C -0.17 -6.78 9.47 27.11 0.26 -6.53 16 12 C -0.12 -4.04 5.11 -15.13 -0.08 -4.12 16 13 C -0.08 -1.75 5.32 29.85 0.16 -1.59 16 14 C 0.13 3.14 5.66 86.38 0.49 3.63 16 15 N -0.71 -13.39 5.55 -463.07 -2.57 -15.96 16 16 C 0.55 12.27 6.02 87.65 0.53 12.80 16 17 O -0.58 -18.34 16.73 -3.04 -0.05 -18.39 16 18 C -0.13 -2.07 2.36 -53.68 -0.13 -2.20 16 19 C -0.09 -1.41 5.48 -19.77 -0.11 -1.52 16 20 C -0.08 -1.44 9.44 22.47 0.21 -1.23 16 21 C -0.16 -2.34 10.11 22.36 0.23 -2.11 16 22 C 0.09 1.24 11.18 84.69 0.95 2.19 16 23 N -0.50 -8.20 10.36 -195.84 -2.03 -10.23 16 24 C 0.10 1.37 10.54 84.67 0.89 2.26 16 25 C -0.14 -1.78 9.75 30.62 0.30 -1.48 16 26 C -0.13 -1.12 9.58 30.62 0.29 -0.83 16 27 C -0.09 -2.88 5.95 29.72 0.18 -2.71 16 28 C 0.14 5.72 6.59 86.32 0.57 6.29 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.07 3.98 6.11 -2.39 -0.01 3.97 16 32 H 0.11 3.77 7.73 -2.91 -0.02 3.74 16 33 H 0.08 1.67 7.78 -2.39 -0.02 1.65 16 34 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 35 H 0.06 1.60 8.11 -2.39 -0.02 1.58 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.41 5.58 8.48 -92.71 -0.79 4.79 16 38 H 0.12 2.37 7.47 -2.91 -0.02 2.35 16 39 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.18 1.37 5.96 -2.91 -0.02 1.35 16 42 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 1.55 8.01 -2.39 -0.02 1.53 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.14 0.45 6.12 -2.38 -0.01 0.44 16 46 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 47 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 Total: -1.00 -74.48 400.90 2.10 -72.38 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.17 Total: 18.32 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 6.45 Total: -2.80 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -6.49 Total: -116.93 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.05 Total: -18.39 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -74.48 2.10 -72.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160986018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.441 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds