Wall clock time and date at job start Wed Apr 1 2020 00:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00138 * 2 1 4 4 H 1.48505 * 109.47043 * 271.18346 * 3 2 1 5 5 H 1.48506 * 109.47036 * 31.17934 * 3 2 1 6 6 H 1.48499 * 109.47087 * 151.18035 * 3 2 1 7 7 C 1.38817 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00079 * 3.49322 * 7 2 1 9 9 N 1.36940 * 119.99985 * 183.49543 * 7 2 1 10 10 C 1.46491 * 120.00331 * 184.91070 * 9 7 2 11 11 C 1.52998 * 109.47530 * 185.11974 * 10 9 7 12 12 C 1.53001 * 115.55234 * 65.19473 * 11 10 9 13 13 C 1.52999 * 109.46628 * 40.17921 * 12 11 10 14 14 N 1.46508 * 109.46664 * 178.77744 * 13 12 11 15 15 C 1.34777 * 119.99494 * 184.61499 * 14 13 12 16 16 O 1.21280 * 120.00501 * 354.67860 * 15 14 13 17 17 C 1.50704 * 119.99680 * 174.67488 * 15 14 13 18 18 C 1.50699 * 109.47092 * 179.97438 * 17 15 14 19 19 C 1.34232 * 126.50338 * 265.02739 * 18 17 15 20 20 N 1.36831 * 109.93352 * 180.02562 * 19 18 17 21 21 H 0.97004 * 125.06462 * 180.02562 * 20 19 18 22 22 C 1.37692 * 109.86960 * 359.97438 * 20 19 18 23 23 C 1.39126 * 133.50142 * 180.02562 * 22 20 19 24 24 C 1.37742 * 119.77553 * 179.97438 * 23 22 20 25 25 C 1.38831 * 120.66863 * 359.97438 * 24 23 22 26 26 C 1.36624 * 120.52889 * 359.97438 * 25 24 23 27 27 C 1.39636 * 119.76328 * 359.70128 * 26 25 24 28 28 C 1.53004 * 117.52047 * 210.90274 * 11 10 9 29 29 C 1.53001 * 60.00305 * 107.47756 * 28 11 10 30 30 H 0.96998 * 119.99955 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99328 * 4.90975 * 9 7 2 32 32 H 1.09000 * 109.46881 * 65.11781 * 10 9 7 33 33 H 1.09000 * 109.46999 * 305.11776 * 10 9 7 34 34 H 1.09001 * 109.47187 * 280.18332 * 12 11 10 35 35 H 1.08995 * 109.47134 * 160.18102 * 12 11 10 36 36 H 1.08998 * 109.47381 * 58.78148 * 13 12 11 37 37 H 1.09001 * 109.47581 * 298.77577 * 13 12 11 38 38 H 0.96992 * 120.00248 * 4.88917 * 14 13 12 39 39 H 1.09000 * 109.47443 * 300.00130 * 17 15 14 40 40 H 1.09001 * 109.47041 * 60.00199 * 17 15 14 41 41 H 1.08002 * 125.03288 * 359.97438 * 19 18 17 42 42 H 1.08003 * 120.11053 * 359.95401 * 23 22 20 43 43 H 1.08003 * 119.66958 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.73893 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.12341 * 179.97438 * 26 25 24 46 46 H 1.08998 * 117.49683 * 214.96701 * 28 11 10 47 47 H 1.09001 * 117.49443 * 359.97438 * 28 11 10 48 48 H 1.09002 * 117.49591 * 252.51342 * 29 28 11 49 49 H 1.08997 * 117.50428 * 107.48968 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4727 2.0608 -1.3998 5 1 1.4603 2.6453 0.7249 6 1 3.5600 1.4330 0.6749 7 6 2.0102 -1.2022 0.0005 8 1 1.4717 -2.1366 -0.0560 9 7 3.3777 -1.2033 0.0728 10 6 4.1159 -2.4641 -0.0348 11 6 5.6049 -2.2053 0.2039 12 6 5.9749 -1.7300 1.6104 13 6 5.1471 -2.4985 2.6425 14 7 5.5223 -2.0642 3.9905 15 6 4.9878 -2.6729 5.0677 16 8 4.1254 -3.5134 4.9236 17 6 5.4620 -2.3093 6.4512 18 6 4.7110 -3.1265 7.4705 19 6 3.6071 -2.7534 8.1368 20 7 3.2091 -3.7559 8.9787 21 1 2.4360 -3.7187 9.5634 22 6 4.0690 -4.8260 8.8715 23 6 4.1270 -6.0732 9.4853 24 6 5.1372 -6.9504 9.1578 25 6 6.1000 -6.6034 8.2197 26 6 6.0615 -5.3843 7.6040 27 6 5.0423 -4.4822 7.9159 28 6 6.6046 -3.1072 -0.5228 29 6 6.4226 -1.6541 -0.9660 30 1 -0.4850 0.8400 -0.0004 31 1 3.8575 -0.3692 0.1954 32 1 3.9752 -2.8835 -1.0310 33 1 3.7452 -3.1670 0.7111 34 1 5.7678 -0.6636 1.6997 35 1 7.0351 -1.9105 1.7877 36 1 5.3377 -3.5666 2.5387 37 1 4.0878 -2.3008 2.4788 38 1 6.1522 -1.3360 4.1077 39 1 6.5292 -2.5145 6.5352 40 1 5.2806 -1.2495 6.6306 41 1 3.1074 -1.8024 8.0255 42 1 3.3826 -6.3525 10.2163 43 1 5.1809 -7.9180 9.6356 44 1 6.8857 -7.3027 7.9745 45 1 6.8140 -5.1210 6.8756 46 1 7.5258 -3.3619 0.0011 47 1 6.2016 -3.8854 -1.1710 48 1 5.8999 -1.4763 -1.9058 49 1 7.2241 -0.9529 -0.7336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167856482.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:44 Heat of formation + Delta-G solvation = 55.191444 kcal Electronic energy + Delta-G solvation = -28674.009203 eV Core-core repulsion = 24795.323234 eV Total energy + Delta-G solvation = -3878.685969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39311 -39.41362 -38.31062 -36.99728 -34.67592 -34.03205 -33.18237 -31.13753 -30.71121 -29.76595 -29.34013 -27.16823 -26.15530 -23.31425 -22.94664 -22.45342 -21.87831 -21.79453 -20.73912 -19.50582 -18.73971 -17.94849 -17.42713 -16.75309 -16.52893 -15.85143 -15.60969 -15.35724 -15.03453 -14.59299 -14.52300 -14.34093 -14.04249 -13.88156 -13.77759 -13.34869 -13.19207 -12.92600 -12.71212 -12.55474 -12.34557 -12.17044 -11.81945 -11.77081 -11.59282 -11.48519 -11.37154 -11.08471 -10.92874 -10.88746 -10.69049 -10.15760 -9.87307 -9.83748 -9.58781 -9.48622 -9.42400 -8.84308 -8.78122 -8.29806 -7.75406 -7.16576 -5.72422 -3.07130 1.03640 1.54572 2.49884 2.88279 3.01235 3.36922 3.41662 3.45386 3.46294 3.85587 3.97106 4.58962 4.62074 4.66030 4.79629 4.90305 4.93533 4.96090 5.03341 5.09434 5.11824 5.18835 5.28487 5.36248 5.41926 5.48509 5.56843 5.57890 5.70611 5.71984 5.75970 5.77284 5.81123 5.92116 6.00619 6.10427 6.26544 6.32309 6.36200 6.36411 6.47015 6.50874 6.58377 6.62573 6.67047 6.73230 6.79029 7.05961 7.40511 7.69682 8.06147 8.47040 8.47618 9.27186 9.98961 10.20309 11.46258 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.002552 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.881965 B =10967.282313 C =12311.750408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.189 3.811 11 C -0.127 4.127 12 C -0.084 4.084 13 C 0.119 3.881 14 N -0.734 5.734 15 C 0.507 3.493 16 O -0.524 6.524 17 C -0.064 4.064 18 C -0.153 4.153 19 C 0.067 3.933 20 N -0.594 5.594 21 H 0.415 0.585 22 C 0.095 3.905 23 C -0.131 4.131 24 C -0.103 4.103 25 C -0.149 4.149 26 C -0.068 4.068 27 C -0.088 4.088 28 C -0.172 4.172 29 C -0.171 4.171 30 H 0.258 0.742 31 H 0.362 0.638 32 H 0.024 0.976 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.395 0.605 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.170 0.830 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.371 -7.252 18.381 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.369 4.369 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.062 3.938 11 C -0.128 4.128 12 C -0.122 4.122 13 C -0.004 4.004 14 N -0.386 5.386 15 C 0.292 3.708 16 O -0.398 6.398 17 C -0.105 4.105 18 C -0.161 4.161 19 C -0.060 4.060 20 N -0.197 5.197 21 H 0.252 0.748 22 C -0.012 4.012 23 C -0.152 4.152 24 C -0.122 4.122 25 C -0.168 4.168 26 C -0.087 4.087 27 C -0.093 4.093 28 C -0.209 4.209 29 C -0.208 4.208 30 H 0.068 0.932 31 H 0.195 0.805 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.228 0.772 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.187 0.813 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.382 -7.943 18.310 25.820 hybrid contribution 0.370 1.688 0.188 1.738 sum 16.751 -6.254 18.497 25.727 Atomic orbital electron populations 1.69712 1.05113 1.25665 1.57807 1.24681 0.95199 0.97116 1.02240 0.86512 0.78966 0.85102 0.77647 1.21227 1.21940 1.20529 1.19070 0.80816 0.94687 1.42343 0.89318 1.42667 1.04027 1.03465 1.89473 1.20218 0.85628 0.89670 0.98301 1.21660 0.94685 1.04218 0.92202 1.21179 0.98584 1.00283 0.92173 1.21467 1.01156 0.98442 0.79365 1.46042 1.47876 1.38284 1.06432 1.20636 0.82068 0.81870 0.86192 1.90749 1.29888 1.32643 1.86565 1.19932 1.00571 1.00128 0.89841 1.19523 0.99575 0.94482 1.02506 1.21584 0.96494 0.93861 0.94049 1.41676 1.26359 1.13162 1.38481 0.74785 1.18240 0.92887 0.90289 0.99816 1.19999 1.00929 0.91632 1.02601 1.20759 0.94499 0.98773 0.98206 1.20595 1.00276 0.96917 0.99006 1.20238 0.96855 0.92988 0.98570 1.18989 0.96849 0.94647 0.98765 1.23023 1.00182 0.93884 1.03824 1.22963 1.02401 0.96193 0.99243 0.93164 0.80482 0.95803 0.94386 0.91106 0.91960 0.91737 0.89431 0.77159 0.88426 0.88352 0.81282 0.86448 0.85965 0.86215 0.86456 0.89168 0.88784 0.88495 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.88 13.97 55.49 0.78 -29.10 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.33 27.90 -169.99 -4.74 17.58 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.49 6.30 56.52 0.36 -6.13 16 7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.75 -17.81 5.29 -59.91 -0.32 -18.13 16 10 C 0.19 3.70 5.32 -4.05 -0.02 3.68 16 11 C -0.13 -1.91 1.83 -154.50 -0.28 -2.19 16 12 C -0.08 -1.13 5.37 -26.73 -0.14 -1.28 16 13 C 0.12 1.81 4.80 -4.04 -0.02 1.79 16 14 N -0.73 -9.30 5.55 -60.29 -0.33 -9.63 16 15 C 0.51 7.26 7.82 -10.98 -0.09 7.18 16 16 O -0.52 -10.23 16.04 5.56 0.09 -10.14 16 17 C -0.06 -0.65 6.23 -29.03 -0.18 -0.83 16 18 C -0.15 -1.87 4.81 -102.71 -0.49 -2.36 16 19 C 0.07 0.71 11.73 -16.73 -0.20 0.52 16 20 N -0.59 -5.97 6.07 -10.65 -0.06 -6.03 16 21 H 0.42 2.83 8.96 -40.82 -0.37 2.46 16 22 C 0.09 1.13 7.28 -83.99 -0.61 0.52 16 23 C -0.13 -1.35 10.08 -39.43 -0.40 -1.75 16 24 C -0.10 -1.00 10.01 -39.54 -0.40 -1.40 16 25 C -0.15 -1.54 9.97 -39.95 -0.40 -1.94 16 26 C -0.07 -0.81 10.05 -39.64 -0.40 -1.20 16 27 C -0.09 -1.15 6.35 -105.13 -0.67 -1.82 16 28 C -0.17 -2.13 9.87 -26.73 -0.26 -2.40 16 29 C -0.17 -2.31 9.97 -26.73 -0.27 -2.58 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 31 H 0.36 8.39 5.46 -40.82 -0.22 8.17 16 32 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.04 0.79 6.69 -51.93 -0.35 0.44 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.68 7.95 -51.93 -0.41 0.26 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.72 6.85 -51.93 -0.36 1.36 16 38 H 0.40 3.62 8.48 -40.82 -0.35 3.27 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 47 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 407.02 15.07 6.13 6.13 Total: -1.00 -37.43 407.02 -11.11 -48.54 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -7.57 Total: 13.88 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -5.08 Total: -13.09 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.06 Total: -62.90 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.74 Total: 17.58 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.43 -11.11 -48.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167856482.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.731 kcal (2) G-P(sol) polarization free energy of solvation -37.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds