Wall clock time and date at job start Wed Apr 1 2020 00:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99808 * 2 1 4 4 H 1.48502 * 109.46894 * 269.99270 * 3 2 1 5 5 H 1.48501 * 109.47343 * 29.99028 * 3 2 1 6 6 H 1.48497 * 109.47470 * 149.99613 * 3 2 1 7 7 C 1.38809 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00322 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99936 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.53041 * 109.46131 * 175.00148 * 11 10 9 13 13 C 1.53187 * 109.31575 * 181.37958 * 12 11 10 14 14 N 1.46923 * 108.77863 * 305.36920 * 13 12 11 15 15 C 1.34774 * 120.62774 * 233.58286 * 14 13 12 16 16 O 1.21279 * 120.00472 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00020 * 179.97438 * 15 14 13 18 18 N 1.46496 * 109.47106 * 179.97438 * 17 15 14 19 19 C 1.36829 * 125.06537 * 265.02101 * 18 17 15 20 20 C 1.34240 * 109.93433 * 180.02562 * 19 18 17 21 21 C 1.46486 * 106.99269 * 0.02562 * 20 19 18 22 22 C 1.39639 * 134.03342 * 179.97438 * 21 20 19 23 23 C 1.36624 * 119.76574 * 179.97438 * 22 21 20 24 24 C 1.38831 * 120.52963 * 0.02562 * 23 22 21 25 25 C 1.37745 * 120.66375 * 0.02562 * 24 23 22 26 26 C 1.37688 * 125.06349 * 84.72230 * 18 17 15 27 27 C 1.46923 * 118.74019 * 53.85328 * 14 13 12 28 28 C 1.53045 * 109.46063 * 295.06770 * 11 10 9 29 29 H 0.96994 * 120.00591 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99871 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47173 * 60.00288 * 10 9 7 32 32 H 1.08996 * 109.47699 * 299.99761 * 10 9 7 33 33 H 1.08999 * 109.46409 * 55.02369 * 11 10 9 34 34 H 1.09001 * 109.49823 * 61.43060 * 12 11 10 35 35 H 1.09002 * 109.52483 * 301.35346 * 12 11 10 36 36 H 1.09002 * 109.59040 * 185.57134 * 13 12 11 37 37 H 1.09002 * 109.70216 * 65.22350 * 13 12 11 38 38 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 39 39 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 40 40 H 1.08004 * 125.03233 * 359.97438 * 19 18 17 41 41 H 1.08000 * 126.50303 * 179.97438 * 20 19 18 42 42 H 1.07998 * 120.11213 * 359.97438 * 22 21 20 43 43 H 1.08001 * 119.73287 * 180.02562 * 23 22 21 44 44 H 1.07994 * 119.66779 * 179.97438 * 24 23 22 45 45 H 1.08008 * 120.10883 * 179.97438 * 25 24 23 46 46 H 1.09006 * 109.58416 * 65.93051 * 27 14 13 47 47 H 1.08998 * 109.58688 * 186.35006 * 27 14 13 48 48 H 1.09007 * 109.49637 * 298.56609 * 28 11 10 49 49 H 1.09002 * 109.49774 * 58.63147 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6528 0.6998 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 6 1.8254 -6.1413 -0.1258 13 6 0.8251 -7.3010 -0.1608 14 7 -0.0414 -7.2140 1.0225 15 6 -0.1835 -8.2694 1.8485 16 8 0.4065 -9.3036 1.6181 17 6 -1.0756 -8.1644 3.0586 18 7 -1.0613 -9.4350 3.7876 19 6 -1.9801 -10.4377 3.6377 20 6 -1.6779 -11.4610 4.4522 21 6 -0.4667 -11.0824 5.1840 22 6 0.3183 -11.7108 6.1529 23 6 1.4193 -11.0739 6.6516 24 6 1.7640 -9.8060 6.2032 25 6 1.0032 -9.1674 5.2489 26 6 -0.1178 -9.8005 4.7215 27 6 -0.7548 -5.9566 1.2848 28 6 0.2675 -4.8102 1.3067 29 1 -0.4851 0.8399 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6849 -3.7144 0.8905 32 1 2.6849 -3.7145 -0.8894 33 1 0.3806 -4.7128 -0.8424 34 1 2.4908 -6.2606 0.7292 35 1 2.4112 -6.1382 -1.0450 36 1 1.3636 -8.2486 -0.1506 37 1 0.2181 -7.2355 -1.0638 38 1 -0.7136 -7.3679 3.7089 39 1 -2.0938 -7.9395 2.7411 40 1 -2.8241 -10.4096 2.9644 41 1 -2.2245 -12.3873 4.5501 42 1 0.0560 -12.6969 6.5067 43 1 2.0263 -11.5606 7.4007 44 1 2.6370 -9.3151 6.6073 45 1 1.2793 -8.1808 4.9069 46 1 -1.4878 -5.7812 0.4973 47 1 -1.2591 -6.0170 2.2492 48 1 0.9476 -4.9421 2.1483 49 1 -0.2555 -3.8592 1.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206937783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:24 Heat of formation + Delta-G solvation = 40.681515 kcal Electronic energy + Delta-G solvation = -29107.927573 eV Core-core repulsion = 25228.612406 eV Total energy + Delta-G solvation = -3879.315167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60675 -40.17790 -37.90043 -37.02292 -35.04142 -33.39355 -32.80851 -31.37064 -30.51286 -30.33849 -29.02360 -27.60519 -26.30455 -23.84434 -23.35831 -22.84481 -22.01782 -21.61542 -20.73681 -20.16227 -19.13787 -17.74814 -17.31474 -17.04279 -16.66029 -15.91589 -15.58774 -15.51061 -14.83844 -14.66217 -14.37789 -14.23170 -13.98465 -13.95986 -13.78544 -13.54391 -13.42204 -13.17763 -12.87677 -12.74128 -12.53972 -12.43591 -12.25516 -11.91084 -11.75592 -11.70418 -11.26584 -11.05971 -10.98026 -10.88378 -10.49916 -10.45808 -10.38468 -10.12499 -10.04110 -9.70980 -9.70043 -8.92456 -8.78388 -8.28877 -7.80322 -6.97255 -5.82324 -3.10519 1.01867 1.51296 2.28756 2.32205 2.61949 2.93943 3.39834 3.45470 3.46687 3.82315 4.15075 4.35206 4.48858 4.54087 4.62091 4.64791 4.73656 4.89408 4.92404 4.96067 5.00742 5.06296 5.24473 5.29940 5.32840 5.34393 5.47673 5.50946 5.55382 5.66274 5.68760 5.79554 5.84313 5.85597 5.94005 5.99615 6.09942 6.18791 6.30260 6.35178 6.36546 6.49560 6.53046 6.63180 6.64797 6.72973 6.84096 7.02722 7.08972 7.19490 7.65596 7.89524 8.37119 9.48430 10.05721 10.40427 11.40647 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002123 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.823149 B =13184.397487 C =13703.500004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.114 3.886 14 N -0.605 5.605 15 C 0.494 3.506 16 O -0.527 6.527 17 C 0.091 3.909 18 N -0.469 5.469 19 C 0.059 3.941 20 C -0.204 4.204 21 C -0.109 4.109 22 C -0.073 4.073 23 C -0.149 4.149 24 C -0.101 4.101 25 C -0.124 4.124 26 C 0.110 3.890 27 C 0.102 3.898 28 C -0.125 4.125 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.166 0.834 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 -22.351 8.965 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.112 4.112 12 C -0.164 4.164 13 C -0.008 4.008 14 N -0.339 5.339 15 C 0.280 3.720 16 O -0.403 6.403 17 C -0.034 4.034 18 N -0.152 5.152 19 C -0.065 4.065 20 C -0.229 4.229 21 C -0.113 4.113 22 C -0.092 4.092 23 C -0.168 4.168 24 C -0.120 4.120 25 C -0.145 4.145 26 C 0.005 3.995 27 C -0.020 4.020 28 C -0.163 4.163 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.183 0.817 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.133 0.867 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.191 -22.495 8.665 24.468 hybrid contribution 0.141 1.246 -0.234 1.275 sum -4.050 -21.249 8.430 23.216 Atomic orbital electron populations 1.69641 1.05086 1.25676 1.57946 1.24725 0.95543 0.97684 1.03053 0.86193 0.78672 0.83812 0.77540 1.21726 1.21754 1.20780 1.19231 0.91051 0.84202 1.42508 0.91257 1.42369 1.05781 0.99979 1.89505 1.20666 0.93150 0.85336 0.97818 1.21305 0.97880 0.94459 0.97605 1.21911 0.97708 0.93974 1.02838 1.21644 0.92459 1.00181 0.86557 1.48189 1.46709 1.12809 1.26227 1.20874 0.82980 0.83782 0.84413 1.90754 1.47253 1.28859 1.73401 1.21658 1.02299 0.86186 0.93303 1.43412 1.22911 1.14780 1.34058 1.21756 0.95213 0.88160 1.01356 1.21623 0.99066 1.00087 1.02118 1.19195 0.97646 0.94328 1.00144 1.20238 0.94275 0.99158 0.95528 1.20604 0.98291 0.95820 1.02097 1.20788 0.99142 0.95240 0.96839 1.20038 0.94484 1.00338 0.99633 1.18187 0.92750 0.95353 0.93241 1.22041 0.95043 0.83287 1.01653 1.22009 0.97860 0.98088 0.98388 0.93519 0.78300 0.96408 0.96330 0.90895 0.91581 0.90514 0.89283 0.91344 0.86583 0.86200 0.81667 0.83611 0.86235 0.86202 0.85859 0.86656 0.90578 0.90251 0.91688 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.64 5.32 -59.91 -0.32 -17.95 16 10 C 0.16 3.00 5.65 -4.04 -0.02 2.98 16 11 C -0.09 -1.35 2.19 -90.57 -0.20 -1.54 16 12 C -0.13 -1.54 5.36 -26.61 -0.14 -1.68 16 13 C 0.11 1.31 6.43 -3.71 -0.02 1.28 16 14 N -0.60 -6.70 2.97 -172.51 -0.51 -7.22 16 15 C 0.49 5.97 7.77 -10.98 -0.09 5.89 16 16 O -0.53 -8.54 15.83 5.56 0.09 -8.45 16 17 C 0.09 0.83 4.83 -5.19 -0.03 0.80 16 18 N -0.47 -5.26 2.27 -115.71 -0.26 -5.52 16 19 C 0.06 0.59 11.27 -16.73 -0.19 0.40 16 20 C -0.20 -2.15 11.08 -37.67 -0.42 -2.56 16 21 C -0.11 -1.34 6.37 -105.14 -0.67 -2.01 16 22 C -0.07 -0.79 10.05 -39.64 -0.40 -1.18 16 23 C -0.15 -1.50 9.97 -39.95 -0.40 -1.89 16 24 C -0.10 -1.07 10.01 -39.54 -0.40 -1.47 16 25 C -0.12 -1.49 10.00 -39.43 -0.39 -1.89 16 26 C 0.11 1.40 6.80 -83.99 -0.57 0.83 16 27 C 0.10 1.00 6.37 -3.49 -0.02 0.98 16 28 C -0.13 -1.63 5.26 -26.39 -0.14 -1.77 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 30 H 0.38 9.53 6.84 -40.82 -0.28 9.25 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.12 7.01 -51.93 -0.36 0.76 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.12 0.90 7.70 -51.93 -0.40 0.50 16 39 H 0.12 0.72 7.91 -51.93 -0.41 0.31 16 40 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 48 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 49 H 0.09 1.37 7.15 -51.93 -0.37 1.00 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -34.38 397.38 -11.25 -45.63 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.60 Total: 7.19 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -4.34 Total: -10.00 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.37 Total: -57.37 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.38 -11.25 -45.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206937783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.315 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds