Wall clock time and date at job start Wed Apr 1 2020 00:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99808 * 2 1 4 4 H 1.48502 * 109.46894 * 269.99270 * 3 2 1 5 5 H 1.48501 * 109.47343 * 29.99028 * 3 2 1 6 6 H 1.48497 * 109.47470 * 149.99613 * 3 2 1 7 7 C 1.38809 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00322 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99936 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.53041 * 109.46131 * 175.00148 * 11 10 9 13 13 C 1.53187 * 109.31575 * 181.37958 * 12 11 10 14 14 N 1.46923 * 108.77863 * 305.36920 * 13 12 11 15 15 C 1.34774 * 120.62774 * 233.58286 * 14 13 12 16 16 O 1.21279 * 120.00472 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00020 * 179.97438 * 15 14 13 18 18 N 1.46496 * 109.47106 * 179.97438 * 17 15 14 19 19 C 1.36829 * 125.06537 * 265.02101 * 18 17 15 20 20 C 1.34240 * 109.93433 * 180.02562 * 19 18 17 21 21 C 1.46486 * 106.99269 * 0.02562 * 20 19 18 22 22 C 1.39639 * 134.03342 * 179.97438 * 21 20 19 23 23 C 1.36624 * 119.76574 * 179.97438 * 22 21 20 24 24 C 1.38831 * 120.52963 * 0.02562 * 23 22 21 25 25 C 1.37745 * 120.66375 * 0.02562 * 24 23 22 26 26 C 1.37688 * 125.06349 * 84.72230 * 18 17 15 27 27 C 1.46923 * 118.74019 * 53.85328 * 14 13 12 28 28 C 1.53045 * 109.46063 * 295.06770 * 11 10 9 29 29 H 0.96994 * 120.00591 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99871 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47173 * 60.00288 * 10 9 7 32 32 H 1.08996 * 109.47699 * 299.99761 * 10 9 7 33 33 H 1.08999 * 109.46409 * 55.02369 * 11 10 9 34 34 H 1.09001 * 109.49823 * 61.43060 * 12 11 10 35 35 H 1.09002 * 109.52483 * 301.35346 * 12 11 10 36 36 H 1.09002 * 109.59040 * 185.57134 * 13 12 11 37 37 H 1.09002 * 109.70216 * 65.22350 * 13 12 11 38 38 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 39 39 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 40 40 H 1.08004 * 125.03233 * 359.97438 * 19 18 17 41 41 H 1.08000 * 126.50303 * 179.97438 * 20 19 18 42 42 H 1.07998 * 120.11213 * 359.97438 * 22 21 20 43 43 H 1.08001 * 119.73287 * 180.02562 * 23 22 21 44 44 H 1.07994 * 119.66779 * 179.97438 * 24 23 22 45 45 H 1.08008 * 120.10883 * 179.97438 * 25 24 23 46 46 H 1.09006 * 109.58416 * 65.93051 * 27 14 13 47 47 H 1.08998 * 109.58688 * 186.35006 * 27 14 13 48 48 H 1.09007 * 109.49637 * 298.56609 * 28 11 10 49 49 H 1.09002 * 109.49774 * 58.63147 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6528 0.6998 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 6 1.8254 -6.1413 -0.1258 13 6 0.8251 -7.3010 -0.1608 14 7 -0.0414 -7.2140 1.0225 15 6 -0.1835 -8.2694 1.8485 16 8 0.4065 -9.3036 1.6181 17 6 -1.0756 -8.1644 3.0586 18 7 -1.0613 -9.4350 3.7876 19 6 -1.9801 -10.4377 3.6377 20 6 -1.6779 -11.4610 4.4522 21 6 -0.4667 -11.0824 5.1840 22 6 0.3183 -11.7108 6.1529 23 6 1.4193 -11.0739 6.6516 24 6 1.7640 -9.8060 6.2032 25 6 1.0032 -9.1674 5.2489 26 6 -0.1178 -9.8005 4.7215 27 6 -0.7548 -5.9566 1.2848 28 6 0.2675 -4.8102 1.3067 29 1 -0.4851 0.8399 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6849 -3.7144 0.8905 32 1 2.6849 -3.7145 -0.8894 33 1 0.3806 -4.7128 -0.8424 34 1 2.4908 -6.2606 0.7292 35 1 2.4112 -6.1382 -1.0450 36 1 1.3636 -8.2486 -0.1506 37 1 0.2181 -7.2355 -1.0638 38 1 -0.7136 -7.3679 3.7089 39 1 -2.0938 -7.9395 2.7411 40 1 -2.8241 -10.4096 2.9644 41 1 -2.2245 -12.3873 4.5501 42 1 0.0560 -12.6969 6.5067 43 1 2.0263 -11.5606 7.4007 44 1 2.6370 -9.3151 6.6073 45 1 1.2793 -8.1808 4.9069 46 1 -1.4878 -5.7812 0.4973 47 1 -1.2591 -6.0170 2.2492 48 1 0.9476 -4.9421 2.1483 49 1 -0.2555 -3.8592 1.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206937783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:23 Heat of formation + Delta-G solvation = 21.954136 kcal Electronic energy + Delta-G solvation = -29108.739653 eV Core-core repulsion = 25228.612406 eV Total energy + Delta-G solvation = -3880.127247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.38329 -41.11526 -38.99686 -37.82728 -36.58222 -34.62781 -33.92604 -32.53399 -31.92086 -31.28845 -29.78787 -28.68620 -27.51723 -25.46279 -24.35507 -23.73272 -23.25876 -22.48176 -21.74583 -21.12457 -20.09119 -19.19545 -18.47633 -18.11956 -17.40962 -16.82868 -16.73219 -16.41441 -16.28165 -15.70125 -15.54677 -15.39503 -15.31849 -15.01534 -14.79344 -14.65099 -14.44513 -14.04098 -13.98134 -13.90763 -13.59056 -13.50359 -13.14782 -13.08348 -12.93387 -12.76562 -12.50845 -12.48374 -12.24040 -12.17003 -11.97169 -11.75224 -11.70237 -11.56088 -11.35031 -11.05929 -10.92163 -10.53620 -9.74697 -9.08944 -8.98519 -8.57510 -7.95748 -5.23257 0.22736 0.70020 1.40844 1.47515 1.48079 1.52979 1.56543 1.88506 2.11031 2.55563 3.00999 3.33519 3.37853 3.70130 3.72095 3.74392 3.80179 3.87945 3.97458 4.05594 4.08393 4.15239 4.26401 4.28398 4.35758 4.39950 4.55407 4.56570 4.59330 4.70217 4.76042 4.78759 4.81670 4.93110 4.93769 5.02209 5.05000 5.07015 5.15444 5.17680 5.26224 5.46309 5.52251 5.52969 5.57096 5.70596 5.86155 5.89002 6.21691 6.27573 6.31041 6.39774 6.99426 7.34582 8.10288 8.35047 9.27400 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002123 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.823149 B =13184.397487 C =13703.500004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.156 3.844 11 C -0.083 4.083 12 C -0.115 4.115 13 C 0.116 3.884 14 N -0.602 5.602 15 C 0.494 3.506 16 O -0.573 6.573 17 C 0.091 3.909 18 N -0.475 5.475 19 C 0.056 3.944 20 C -0.220 4.220 21 C -0.136 4.136 22 C -0.084 4.084 23 C -0.154 4.154 24 C -0.109 4.109 25 C -0.146 4.146 26 C 0.083 3.917 27 C 0.109 3.891 28 C -0.121 4.121 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.158 0.842 40 H 0.198 0.802 41 H 0.165 0.835 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.116 0.884 46 H 0.090 0.910 47 H 0.111 0.889 48 H 0.058 0.942 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 -22.985 9.313 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.030 3.970 11 C -0.102 4.102 12 C -0.154 4.154 13 C -0.006 4.006 14 N -0.335 5.335 15 C 0.282 3.718 16 O -0.452 6.452 17 C -0.034 4.034 18 N -0.158 5.158 19 C -0.068 4.068 20 C -0.245 4.245 21 C -0.141 4.141 22 C -0.103 4.103 23 C -0.173 4.173 24 C -0.128 4.128 25 C -0.166 4.166 26 C -0.023 4.023 27 C -0.013 4.013 28 C -0.159 4.159 29 H 0.061 0.939 30 H 0.210 0.790 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.148 0.852 39 H 0.176 0.824 40 H 0.215 0.785 41 H 0.183 0.817 42 H 0.157 0.843 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.134 0.866 46 H 0.108 0.892 47 H 0.129 0.871 48 H 0.077 0.923 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.811 -23.136 9.012 25.291 hybrid contribution 0.414 1.400 -0.348 1.500 sum -4.397 -21.736 8.664 23.809 Atomic orbital electron populations 1.69776 1.06328 1.26066 1.59412 1.25483 0.96423 1.00796 1.03729 0.85207 0.77726 0.79838 0.77389 1.21520 1.22013 1.19787 1.19586 0.91360 0.85581 1.41277 0.91211 1.42527 1.05703 1.00882 1.89292 1.20810 0.93950 0.85144 0.97113 1.21182 0.97042 0.93502 0.98492 1.21801 0.97640 0.93002 1.02940 1.21579 0.92539 0.98967 0.87510 1.48239 1.46374 1.13056 1.25823 1.21397 0.82574 0.83041 0.84808 1.90737 1.49244 1.30667 1.74587 1.21890 1.03666 0.85900 0.91954 1.43607 1.22721 1.15616 1.33827 1.22349 0.95579 0.87578 1.01288 1.21973 0.98914 1.01257 1.02313 1.19665 0.98719 0.94717 1.00971 1.20583 0.94321 1.00071 0.95284 1.20945 0.98354 0.95672 1.02338 1.21116 0.99530 0.95672 0.96500 1.20238 0.95058 1.00770 1.00554 1.18504 0.93509 0.96046 0.94233 1.22094 0.93989 0.81111 1.04074 1.21904 0.98244 0.98577 0.97216 0.93939 0.78986 0.96939 0.96661 0.90970 0.92398 0.89712 0.90384 0.89878 0.85241 0.82421 0.78507 0.81729 0.84319 0.83763 0.84074 0.86595 0.89161 0.87061 0.92304 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.98 13.06 21.65 0.28 -56.70 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.25 -13.47 9.99 84.03 0.84 -12.63 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.74 -35.91 5.32 -343.45 -1.83 -37.74 16 10 C 0.16 5.93 5.65 86.38 0.49 6.42 16 11 C -0.08 -2.33 2.19 -10.76 -0.02 -2.35 16 12 C -0.12 -2.70 5.36 30.67 0.16 -2.54 16 13 C 0.12 2.52 6.43 86.36 0.56 3.07 16 14 N -0.60 -12.15 2.97 -818.09 -2.43 -14.57 16 15 C 0.49 11.17 7.77 87.66 0.68 11.85 16 16 O -0.57 -18.33 15.83 -3.02 -0.05 -18.38 16 17 C 0.09 1.43 4.83 85.64 0.41 1.84 16 18 N -0.47 -10.00 2.27 -519.99 -1.18 -11.18 16 19 C 0.06 1.02 11.27 83.00 0.94 1.95 16 20 C -0.22 -4.40 11.08 23.51 0.26 -4.14 16 21 C -0.14 -3.30 6.37 -20.20 -0.13 -3.43 16 22 C -0.08 -1.75 10.05 22.23 0.22 -1.53 16 23 C -0.15 -2.96 9.97 22.03 0.22 -2.74 16 24 C -0.11 -2.27 10.01 22.30 0.22 -2.05 16 25 C -0.15 -3.50 10.00 22.37 0.22 -3.28 16 26 C 0.08 2.09 6.80 39.03 0.27 2.35 16 27 C 0.11 1.85 6.37 86.51 0.55 2.40 16 28 C -0.12 -3.03 5.26 30.82 0.16 -2.86 16 29 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.38 18.97 6.84 -92.71 -0.63 18.34 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 1.92 7.01 -2.39 -0.02 1.90 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.13 1.69 7.70 -2.39 -0.02 1.67 16 39 H 0.16 1.24 7.91 -2.39 -0.02 1.22 16 40 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.12 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 47 H 0.11 1.21 5.93 -2.39 -0.01 1.20 16 48 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 49 H 0.07 2.07 7.15 -2.39 -0.02 2.05 16 Total: -1.00 -75.43 397.38 3.66 -71.77 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.31 Total: 30.71 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 6.52 Total: -11.23 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.15 Total: -120.19 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -75.43 3.66 -71.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206937783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.724 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds