Wall clock time and date at job start Wed Apr 1 2020 00:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86792 * 120.00209 * 2 1 4 4 H 1.48498 * 109.47456 * 269.99899 * 3 2 1 5 5 H 1.48506 * 109.47059 * 30.00210 * 3 2 1 6 6 H 1.48495 * 109.47284 * 149.99558 * 3 2 1 7 7 C 1.38951 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00296 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99718 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00056 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99796 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00295 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47378 * 180.02562 * 12 10 9 14 14 C 1.46893 * 111.00105 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.50259 * 35.06396 * 14 13 12 16 16 C 1.53047 * 109.50032 * 274.99772 * 14 13 12 17 17 C 1.53037 * 109.54022 * 178.65096 * 16 14 13 18 18 C 1.53193 * 109.31460 * 61.36661 * 17 16 14 19 19 N 1.46927 * 108.77274 * 305.36797 * 18 17 16 20 20 C 1.34779 * 120.62898 * 233.58076 * 19 18 17 21 21 O 1.21278 * 120.00476 * 179.97438 * 20 19 18 22 22 C 1.50704 * 119.99742 * 0.02562 * 20 19 18 23 23 F 1.39899 * 110.53794 * 312.60529 * 22 20 19 24 24 C 1.54270 * 110.48466 * 189.99850 * 22 20 19 25 25 C 1.53869 * 106.63967 * 217.73352 * 24 22 20 26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 22 27 27 C 1.54895 * 104.19476 * 23.60777 * 26 25 24 28 28 C 1.46922 * 118.74180 * 53.85823 * 19 18 17 29 29 H 0.97002 * 119.99971 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00078 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47178 * 59.99909 * 12 10 9 32 32 H 1.09004 * 109.47157 * 299.99584 * 12 10 9 33 33 H 1.00902 * 111.00049 * 303.95547 * 13 12 10 34 34 H 1.09007 * 109.45278 * 58.63067 * 16 14 13 35 35 H 1.08995 * 109.46007 * 298.67796 * 16 14 13 36 36 H 1.09011 * 109.49687 * 301.41619 * 17 16 14 37 37 H 1.08996 * 109.49600 * 181.31988 * 17 16 14 38 38 H 1.08999 * 109.59048 * 185.58045 * 18 17 16 39 39 H 1.08998 * 109.58309 * 65.14680 * 18 17 16 40 40 H 1.09002 * 110.03399 * 98.42351 * 24 22 20 41 41 H 1.08995 * 110.02943 * 337.04251 * 24 22 20 42 42 H 1.08999 * 110.03405 * 119.26051 * 25 24 22 43 43 H 1.09001 * 110.03705 * 240.64196 * 25 24 22 44 44 H 1.08997 * 110.48788 * 142.28685 * 26 25 24 45 45 H 1.09000 * 110.48806 * 264.79985 * 26 25 24 46 46 H 1.09001 * 110.75082 * 80.37254 * 27 26 25 47 47 H 1.08991 * 110.75596 * 203.55944 * 27 26 25 48 48 H 1.09004 * 109.58710 * 65.92648 * 28 19 18 49 49 H 1.09007 * 109.58629 * 186.35388 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5606 -2.3707 0.0000 13 7 6.0502 -3.7557 -0.0006 14 6 7.5187 -3.7949 -0.0013 15 1 7.9051 -2.9641 0.5891 16 6 8.0321 -3.6825 -1.4386 17 6 9.5625 -3.6895 -1.4375 18 6 10.0627 -5.0117 -0.8475 19 7 9.4574 -5.1969 0.4784 20 6 10.2284 -5.4348 1.5580 21 8 9.7168 -5.5854 2.6473 22 6 11.7263 -5.5124 1.4119 23 9 12.0723 -6.3316 0.3319 24 6 12.3693 -6.0346 2.7133 25 6 13.6820 -5.2540 2.9003 26 6 13.7921 -4.2842 1.7055 27 6 12.3291 -4.0961 1.2330 28 6 7.9954 -5.1240 0.6040 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3634 0.0004 31 1 5.9239 -1.8569 0.8899 32 1 5.9240 -1.8569 -0.8901 33 1 5.6747 -4.2724 0.7805 34 1 7.6734 -2.7528 -1.8806 35 1 7.6655 -4.5269 -2.0223 36 1 9.9296 -2.8595 -0.8336 37 1 9.9274 -3.5858 -2.4593 38 1 11.1482 -4.9822 -0.7528 39 1 9.7730 -5.8356 -1.4997 40 1 12.5783 -7.1008 2.6249 41 1 11.7038 -5.8537 3.5573 42 1 13.6533 -4.6934 3.8347 43 1 14.5281 -5.9412 2.9034 44 1 14.2153 -3.3319 2.0249 45 1 14.3978 -4.7230 0.9126 46 1 11.8097 -3.3736 1.8626 47 1 12.2972 -3.7887 0.1878 48 1 7.5406 -5.9569 0.0678 49 1 7.7164 -5.1685 1.6568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208459551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:18 Heat of formation + Delta-G solvation = -141.227598 kcal Electronic energy + Delta-G solvation = -30505.871940 eV Core-core repulsion = 26187.899377 eV Total energy + Delta-G solvation = -4317.972563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.12814 -41.43665 -40.36036 -39.13843 -37.77913 -36.48165 -35.84202 -33.77521 -33.33712 -31.64953 -29.91832 -29.83678 -28.02742 -26.64393 -25.58452 -23.60860 -22.92552 -21.82790 -21.33562 -21.14132 -20.38989 -20.11619 -18.84068 -17.89557 -17.70975 -17.14340 -16.94616 -16.62778 -16.52402 -16.25838 -15.91035 -15.64188 -15.49007 -15.29306 -15.12183 -15.00042 -14.70950 -14.54703 -14.22954 -14.11279 -14.01853 -13.88246 -13.51472 -13.38362 -13.07074 -12.94594 -12.63178 -12.43653 -12.41630 -12.29612 -12.22626 -11.99480 -11.96929 -11.86530 -11.72030 -11.61976 -11.52584 -11.37991 -10.84189 -10.47044 -10.26640 -9.87298 -9.43380 -8.42422 -6.03693 1.19688 1.29371 1.35026 1.43959 1.61781 1.92826 2.22222 2.68922 2.92810 3.13230 3.14735 3.28460 3.32441 3.57314 3.68678 3.85878 3.96676 4.02039 4.13317 4.14733 4.21701 4.27708 4.32838 4.36301 4.37597 4.45073 4.48948 4.59473 4.62500 4.69493 4.72674 4.82468 4.94122 4.96892 4.99350 5.05903 5.15428 5.18039 5.20893 5.29712 5.37597 5.41534 5.51814 5.87140 5.99128 6.14478 6.25690 6.57717 6.79530 6.86173 7.37429 7.93819 8.75193 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.002100 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.372091 B =13327.197856 C =13502.349380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.232 1.232 7 C -0.329 4.329 8 H 0.055 0.945 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.614 6.614 12 C 0.065 3.935 13 N -0.676 5.676 14 C 0.084 3.916 15 H 0.052 0.948 16 C -0.110 4.110 17 C -0.126 4.126 18 C 0.090 3.910 19 N -0.594 5.594 20 C 0.498 3.502 21 O -0.565 6.565 22 C 0.102 3.898 23 F -0.188 7.188 24 C -0.141 4.141 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.136 4.136 28 C 0.111 3.889 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.344 0.656 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.105 0.895 48 H 0.079 0.921 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.380 -3.876 -0.617 36.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.215 4.215 3 Si 0.786 3.214 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.155 1.155 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.498 6.498 12 C -0.067 4.067 13 N -0.309 5.309 14 C -0.027 4.027 15 H 0.070 0.930 16 C -0.148 4.148 17 C -0.164 4.164 18 C -0.032 4.032 19 N -0.325 5.325 20 C 0.285 3.715 21 O -0.444 6.444 22 C 0.080 3.920 23 F -0.169 7.169 24 C -0.179 4.179 25 C -0.159 4.159 26 C -0.156 4.156 27 C -0.173 4.173 28 C -0.012 4.012 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.091 0.909 32 H 0.136 0.864 33 H 0.163 0.837 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.124 0.876 48 H 0.097 0.903 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 35.457 -4.658 -0.763 35.770 hybrid contribution -0.803 0.689 0.977 1.440 sum 34.655 -3.969 0.213 34.882 Atomic orbital electron populations 1.69808 1.08159 1.29291 1.50162 1.26153 0.96518 1.02820 0.96033 0.85342 0.79409 0.76583 0.80036 1.17929 1.20032 1.15519 1.19002 0.81477 0.94938 1.50451 0.92733 1.42017 1.05833 1.07578 1.67713 1.20931 0.90894 0.83340 0.81218 1.90552 1.71365 1.32812 1.55114 1.21660 0.89612 0.91559 1.03915 1.60122 1.07162 1.12293 1.51343 1.21942 0.86338 0.96261 0.98114 0.92961 1.21581 0.95504 1.03175 0.94544 1.21942 0.94556 0.96718 1.03183 1.22390 1.00025 0.99022 0.81717 1.48145 1.06430 1.68911 1.09025 1.21247 0.90029 0.76287 0.83948 1.90704 1.75028 1.51364 1.27329 1.21975 0.89627 0.93733 0.86647 1.92852 1.92934 1.74459 1.56618 1.22702 0.98393 1.01618 0.95167 1.22163 0.95780 0.98308 0.99634 1.22405 0.94554 1.00741 0.97929 1.23214 0.97615 0.91778 1.04722 1.21736 0.79703 0.97991 1.01750 0.91111 0.77436 0.90916 0.86445 0.83723 0.91041 0.91588 0.90692 0.87604 0.87080 0.90286 0.90127 0.89891 0.90534 0.89927 0.88919 0.89956 0.89394 0.87627 0.90315 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.96 21.66 0.30 -56.26 16 2 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 3 Si 0.97 38.68 27.74 68.60 1.90 40.58 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 7 C -0.33 -19.44 10.16 84.04 0.85 -18.59 16 8 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 9 N -0.59 -27.92 5.09 -306.98 -1.56 -29.48 16 10 C 0.45 20.36 7.82 87.66 0.69 21.05 16 11 O -0.61 -34.45 15.78 -3.08 -0.05 -34.50 16 12 C 0.06 1.98 5.97 85.55 0.51 2.49 16 13 N -0.68 -19.97 5.93 -494.42 -2.93 -22.91 16 14 C 0.08 1.81 2.66 45.14 0.12 1.93 16 15 H 0.05 1.10 7.80 -2.39 -0.02 1.08 16 16 C -0.11 -1.89 5.39 30.62 0.17 -1.73 16 17 C -0.13 -1.36 6.08 30.67 0.19 -1.17 16 18 C 0.09 1.15 5.67 86.36 0.49 1.64 16 19 N -0.59 -11.50 2.97 -818.05 -2.43 -13.93 16 20 C 0.50 11.03 6.82 87.66 0.60 11.63 16 21 O -0.57 -16.86 14.83 -3.02 -0.04 -16.90 16 22 C 0.10 1.59 0.91 -10.44 -0.01 1.58 16 23 F -0.19 -2.99 14.55 44.97 0.65 -2.33 16 24 C -0.14 -2.12 6.06 31.32 0.19 -1.94 16 25 C -0.12 -1.12 6.80 31.32 0.21 -0.91 16 26 C -0.12 -0.83 6.83 31.67 0.22 -0.61 16 27 C -0.14 -1.33 5.68 31.91 0.18 -1.14 16 28 C 0.11 2.54 5.73 86.51 0.50 3.03 16 29 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.39 15.17 5.76 -92.71 -0.53 14.64 16 31 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 32 H 0.12 2.95 7.41 -2.38 -0.02 2.93 16 33 H 0.34 11.21 8.07 -89.69 -0.72 10.48 16 34 H 0.07 1.23 7.43 -2.38 -0.02 1.21 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.11 1.13 3.67 -2.39 -0.01 1.12 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 41 H 0.08 1.59 6.75 -2.39 -0.02 1.58 16 42 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.09 0.95 8.05 -2.39 -0.02 0.93 16 47 H 0.11 0.67 6.83 -2.39 -0.02 0.66 16 48 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.07 1.98 7.00 -2.38 -0.02 1.97 16 Total: -1.00 -80.44 383.56 0.87 -79.56 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: -0.33 Total: 39.35 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.36 Total: 16.81 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -6.62 Total: -122.57 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.09 Total: -51.40 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.65 Total: -2.33 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.58 kcal Total: -80.44 0.87 -79.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208459551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.663 kcal (2) G-P(sol) polarization free energy of solvation -80.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds