Wall clock time and date at job start Wed Apr 1 2020 00:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99582 * 2 1 4 4 H 1.48497 * 109.47208 * 269.99878 * 3 2 1 5 5 H 1.48492 * 109.47264 * 30.00766 * 3 2 1 6 6 H 1.48508 * 109.46806 * 150.00250 * 3 2 1 7 7 C 1.38949 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99856 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00085 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99518 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00709 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99888 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.50037 * 325.06122 * 14 13 12 16 16 C 1.53044 * 109.49742 * 85.16270 * 14 13 12 17 17 C 1.53046 * 109.53741 * 181.31343 * 16 14 13 18 18 C 1.53193 * 109.31284 * 298.63551 * 17 16 14 19 19 N 1.46927 * 108.77605 * 54.63429 * 18 17 16 20 20 C 1.34784 * 120.63067 * 126.36688 * 19 18 17 21 21 O 1.21276 * 119.99878 * 180.02562 * 20 19 18 22 22 C 1.50701 * 119.99670 * 0.02562 * 20 19 18 23 23 F 1.39892 * 110.01713 * 54.30119 * 22 20 19 24 24 C 1.54262 * 110.03213 * 292.90420 * 22 20 19 25 25 C 1.54960 * 104.16154 * 217.13814 * 24 22 20 26 26 C 1.54893 * 102.77614 * 37.88968 * 25 24 22 27 27 C 1.53878 * 110.02677 * 175.69006 * 22 20 19 28 28 C 1.46924 * 118.73978 * 306.39547 * 19 18 17 29 29 H 0.97002 * 120.00283 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47103 * 60.00237 * 12 10 9 32 32 H 1.09000 * 109.47247 * 300.00115 * 12 10 9 33 33 H 1.00904 * 110.99860 * 56.04901 * 13 12 10 34 34 H 1.08990 * 109.45838 * 301.33486 * 16 14 13 35 35 H 1.08998 * 109.46014 * 61.29611 * 16 14 13 36 36 H 1.08998 * 109.49644 * 178.68282 * 17 16 14 37 37 H 1.09004 * 109.52239 * 58.60299 * 17 16 14 38 38 H 1.08996 * 109.59010 * 294.85000 * 18 17 16 39 39 H 1.09001 * 109.70066 * 174.48892 * 18 17 16 40 40 H 1.08999 * 110.49113 * 335.78769 * 24 22 20 41 41 H 1.09001 * 110.48607 * 98.43300 * 24 22 20 42 42 H 1.09003 * 110.72397 * 279.58161 * 25 24 22 43 43 H 1.09000 * 110.76922 * 156.22634 * 25 24 22 44 44 H 1.09006 * 110.48953 * 203.40778 * 26 25 24 45 45 H 1.09003 * 110.48576 * 80.76343 * 26 25 24 46 46 H 1.09002 * 110.02734 * 238.56530 * 27 22 20 47 47 H 1.08995 * 110.03680 * 359.97438 * 27 22 20 48 48 H 1.09005 * 109.58322 * 293.81411 * 28 19 18 49 49 H 1.09004 * 109.58570 * 173.39826 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4208 -0.0011 12 6 5.5608 -2.3703 -0.0011 13 7 6.0505 -3.7553 -0.0017 14 6 7.5190 -3.7944 -0.0023 15 1 7.9049 -2.9619 -0.5907 16 6 8.0335 -3.6868 1.4350 17 6 9.5639 -3.6945 1.4328 18 6 10.0631 -5.0151 0.8382 19 7 9.4568 -5.1957 -0.4879 20 6 10.2269 -5.4295 -1.5691 21 8 9.7144 -5.5764 -2.6584 22 6 11.7249 -5.5083 -1.4242 23 9 12.0627 -6.4533 -0.4496 24 6 12.2920 -4.1263 -1.0394 25 6 13.6338 -4.0392 -1.8097 26 6 13.2994 -4.7231 -3.1586 27 6 12.3653 -5.8880 -2.7709 28 6 7.9950 -5.1161 -0.6132 29 1 -0.4851 0.8400 0.0004 30 1 3.8649 -0.3632 -0.0007 31 1 5.9241 -1.8565 0.8890 32 1 5.9241 -1.8564 -0.8910 33 1 5.6751 -4.2713 -0.7833 34 1 7.6756 -2.7585 1.8802 35 1 7.6670 -4.5330 2.0162 36 1 9.9297 -3.5943 2.4547 37 1 9.9314 -2.8628 0.8316 38 1 9.7735 -5.8410 1.4878 39 1 11.1486 -4.9882 0.7430 40 1 11.6161 -3.3337 -1.3603 41 1 12.4640 -4.0703 0.0355 42 1 14.4167 -4.5854 -1.2834 43 1 13.9237 -3.0000 -1.9648 44 1 14.2065 -5.1021 -3.6295 45 1 12.7862 -4.0272 -3.8223 46 1 12.9401 -6.8080 -2.6648 47 1 11.5927 -6.0157 -3.5291 48 1 7.5368 -5.9503 -0.0819 49 1 7.7160 -5.1535 -1.6663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208459552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:22 Heat of formation + Delta-G solvation = -115.537504 kcal Electronic energy + Delta-G solvation = -30561.752409 eV Core-core repulsion = 26244.893852 eV Total energy + Delta-G solvation = -4316.858557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.41428 -40.66160 -38.78519 -38.07276 -37.15450 -35.30767 -33.92801 -32.54423 -31.68780 -30.72451 -29.37714 -29.00821 -26.53504 -25.80672 -23.92995 -22.82628 -22.08346 -21.53040 -20.40362 -19.50073 -19.28508 -18.35803 -18.19087 -16.97562 -16.39650 -16.28336 -15.78617 -15.48045 -15.35064 -15.11301 -14.85968 -14.71659 -14.61598 -14.20334 -13.94686 -13.90218 -13.75686 -13.66429 -13.19727 -13.01343 -12.78873 -12.51993 -12.35744 -12.17849 -12.06347 -11.95177 -11.72877 -11.65575 -11.56422 -11.35266 -11.21745 -11.12000 -11.04053 -10.95242 -10.86018 -10.60515 -10.03952 -9.98262 -9.58431 -9.03242 -8.61129 -8.24762 -8.17922 -6.31812 -3.83337 2.04570 2.41701 3.01405 3.05688 3.14029 3.60143 3.72403 3.74369 3.90610 4.00840 4.09340 4.10392 4.43492 4.59469 4.64186 4.65174 4.71674 4.75580 4.85037 4.88325 4.91933 5.02205 5.05421 5.15308 5.19910 5.24652 5.32526 5.38365 5.44988 5.51018 5.52741 5.59245 5.60718 5.65464 5.71407 5.74286 5.77957 5.80187 5.88541 5.94065 6.07278 6.17783 6.91777 7.04174 7.48917 7.57129 7.63561 8.13485 8.58678 8.94053 9.41362 9.81305 10.81267 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020922 B = 0.002137 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.968187 B =13096.629814 C =13315.868445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.564 6.564 12 C 0.050 3.950 13 N -0.660 5.660 14 C 0.076 3.924 15 H 0.046 0.954 16 C -0.111 4.111 17 C -0.135 4.135 18 C 0.095 3.905 19 N -0.596 5.596 20 C 0.504 3.496 21 O -0.522 6.522 22 C 0.103 3.897 23 F -0.190 7.190 24 C -0.143 4.143 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.143 4.143 28 C 0.108 3.892 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.353 0.647 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.790 -6.118 -0.403 32.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.445 6.445 12 C -0.083 4.083 13 N -0.294 5.294 14 C -0.035 4.035 15 H 0.064 0.936 16 C -0.149 4.149 17 C -0.174 4.174 18 C -0.028 4.028 19 N -0.329 5.329 20 C 0.289 3.711 21 O -0.398 6.398 22 C 0.082 3.918 23 F -0.171 7.171 24 C -0.181 4.181 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.181 4.181 28 C -0.014 4.014 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.174 0.826 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.122 0.878 48 H 0.102 0.898 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 30.809 -6.902 -0.288 31.574 hybrid contribution 0.652 1.676 -0.616 1.901 sum 31.461 -5.225 -0.903 31.905 Atomic orbital electron populations 1.69620 1.05634 1.27499 1.49329 1.25044 0.95503 0.97981 0.97666 0.86668 0.79783 0.84058 0.78856 1.19660 1.20151 1.19501 1.19433 0.79212 0.96647 1.48063 0.86257 1.42203 1.07554 1.06136 1.67099 1.19672 0.88112 0.84592 0.84063 1.90570 1.69401 1.30903 1.53652 1.21753 0.95104 0.90202 1.01268 1.60090 1.04821 1.13033 1.51427 1.21833 0.88735 0.96352 0.96591 0.93605 1.21567 0.93431 1.03532 0.96366 1.21964 0.96891 0.96968 1.01557 1.22124 0.99011 0.98448 0.83177 1.48006 1.07119 1.69780 1.07956 1.20735 0.88936 0.77054 0.84371 1.90711 1.73962 1.49385 1.25761 1.21790 0.91882 0.89205 0.88947 1.92895 1.93246 1.66623 1.64326 1.23119 0.98424 0.94331 1.02193 1.22553 0.96226 1.01611 0.95740 1.22361 0.99280 0.96925 0.97445 1.22761 1.00366 1.00013 0.94981 1.21826 0.78541 0.98054 1.03029 0.91602 0.79710 0.89449 0.93703 0.82649 0.91241 0.90613 0.90075 0.91575 0.90567 0.88894 0.89365 0.89035 0.90654 0.90410 0.90618 0.90839 0.89677 0.87840 0.89831 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.34 27.74 -169.99 -4.71 14.62 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 9 N -0.59 -14.07 5.09 -10.96 -0.06 -14.12 16 10 C 0.45 10.19 7.82 -10.99 -0.09 10.10 16 11 O -0.56 -15.13 15.78 5.55 0.09 -15.05 16 12 C 0.05 0.81 5.97 -4.97 -0.03 0.78 16 13 N -0.66 -9.98 5.94 -107.86 -0.64 -10.62 16 14 C 0.08 0.88 2.64 -67.59 -0.18 0.70 16 15 H 0.05 0.54 7.80 -51.93 -0.40 0.14 16 16 C -0.11 -1.10 5.40 -26.68 -0.14 -1.24 16 17 C -0.14 -0.97 6.08 -26.61 -0.16 -1.13 16 18 C 0.09 0.72 5.60 -3.71 -0.02 0.70 16 19 N -0.60 -6.08 2.97 -172.77 -0.51 -6.59 16 20 C 0.50 5.71 6.68 -10.98 -0.07 5.64 16 21 O -0.52 -7.57 14.63 5.56 0.08 -7.49 16 22 C 0.10 0.89 1.08 -90.65 -0.10 0.79 16 23 F -0.19 -1.76 14.99 2.25 0.03 -1.72 16 24 C -0.14 -0.89 5.18 -25.04 -0.13 -1.02 16 25 C -0.12 -0.63 6.91 -24.70 -0.17 -0.80 16 26 C -0.12 -0.72 6.83 -25.07 -0.17 -0.89 16 27 C -0.14 -1.14 6.25 -25.61 -0.16 -1.30 16 28 C 0.11 1.23 5.70 -3.71 -0.02 1.21 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 31 H 0.09 1.28 7.43 -51.93 -0.39 0.89 16 32 H 0.05 0.65 8.05 -51.93 -0.42 0.24 16 33 H 0.35 5.62 8.06 -39.29 -0.32 5.31 16 34 H 0.07 0.72 7.44 -51.93 -0.39 0.34 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.61 3.45 -51.93 -0.18 0.43 16 40 H 0.09 0.58 7.85 -51.93 -0.41 0.18 16 41 H 0.09 0.45 6.61 -51.93 -0.34 0.11 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.61 8.02 -51.93 -0.42 0.20 16 47 H 0.10 1.01 6.40 -51.93 -0.33 0.68 16 48 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -33.91 382.46 -8.43 -42.33 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -7.55 Total: 12.11 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -1.69 Total: 5.78 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.44 Total: -56.35 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.17 Total: -22.53 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.91 -8.43 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208459552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.203 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds