Wall clock time and date at job start Wed Apr 1 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47547 * 300.00187 * 3 2 1 6 6 H 1.48499 * 109.47059 * 60.00370 * 3 2 1 7 7 C 1.38954 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00146 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99494 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99533 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00086 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99836 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47095 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99979 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.49483 * 325.06766 * 14 13 12 16 16 C 1.53038 * 109.49570 * 85.16506 * 14 13 12 17 17 C 1.53041 * 109.53947 * 181.31555 * 16 14 13 18 18 C 1.53628 * 109.24124 * 298.51597 * 17 16 14 19 19 N 1.46924 * 108.54698 * 54.84829 * 18 17 16 20 20 C 1.34780 * 120.62893 * 126.36693 * 19 18 17 21 21 O 1.21275 * 120.00052 * 174.83268 * 20 19 18 22 22 C 1.50699 * 120.00026 * 354.83954 * 20 19 18 23 23 C 1.53001 * 115.56248 * 79.94347 * 22 20 19 24 24 C 1.52995 * 109.47186 * 39.11445 * 23 22 20 25 25 F 1.39902 * 109.47449 * 174.99832 * 24 23 22 26 26 C 1.53000 * 117.49680 * 294.25656 * 22 20 19 27 27 C 1.52997 * 59.99989 * 252.50902 * 26 22 20 28 28 C 1.46921 * 118.74045 * 306.09993 * 19 18 17 29 29 H 0.96997 * 120.00631 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00262 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.46837 * 60.00924 * 12 10 9 32 32 H 1.08996 * 109.47596 * 300.00694 * 12 10 9 33 33 H 1.00901 * 110.99794 * 56.05328 * 13 12 10 34 34 H 1.08999 * 109.46078 * 301.33780 * 16 14 13 35 35 H 1.09000 * 109.45896 * 61.29450 * 16 14 13 36 36 H 1.09001 * 109.49676 * 58.58196 * 17 16 14 37 37 H 1.08993 * 109.49875 * 178.65020 * 17 16 14 38 38 H 1.09000 * 109.73439 * 295.11629 * 18 17 16 39 39 H 1.08997 * 109.66602 * 174.54943 * 18 17 16 40 40 H 1.09001 * 109.47177 * 159.11647 * 23 22 20 41 41 H 1.09000 * 109.47260 * 279.11719 * 23 22 20 42 42 H 1.09000 * 109.47394 * 295.00148 * 24 23 22 43 43 H 1.09008 * 109.46872 * 54.99963 * 24 23 22 44 44 H 1.09005 * 117.49705 * 145.01756 * 26 22 20 45 45 H 1.09002 * 117.50276 * 0.02562 * 26 22 20 46 46 H 1.08998 * 117.49712 * 107.48745 * 27 26 22 47 47 H 1.08996 * 117.50027 * 252.51129 * 27 26 22 48 48 H 1.09007 * 109.58893 * 173.64257 * 28 19 18 49 49 H 1.09001 * 109.58379 * 294.06854 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0026 11 8 3.2103 -3.5577 -0.0022 12 6 1.2440 -4.8629 -0.0032 13 7 2.1986 -5.9794 -0.0037 14 6 1.4983 -7.2708 -0.0049 15 1 0.5842 -7.1895 0.5832 16 6 1.1485 -7.6608 -1.4428 17 6 0.3900 -8.9900 -1.4426 18 6 1.2890 -10.0858 -0.8498 19 7 1.7431 -9.6502 0.4778 20 6 1.5610 -10.4358 1.5578 21 8 2.0225 -10.1085 2.6305 22 6 0.7840 -11.7209 1.4323 23 6 1.5579 -12.9063 0.8520 24 6 2.9875 -12.8980 1.3969 25 9 3.6608 -14.0430 0.9576 26 6 -0.7048 -11.6162 1.0955 27 6 -0.2657 -12.0193 2.5046 28 6 2.4049 -8.3446 0.6050 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3906 -0.0016 31 1 0.6171 -4.9201 -0.8932 32 1 0.6176 -4.9213 0.8868 33 1 2.8334 -5.9127 0.7778 34 1 0.5235 -6.8862 -1.8873 35 1 2.0647 -7.7656 -2.0238 36 1 -0.5139 -8.8930 -0.8412 37 1 0.1202 -9.2552 -2.4648 38 1 2.1515 -10.2443 -1.4971 39 1 0.7240 -11.0132 -0.7567 40 1 1.0658 -13.8362 1.1371 41 1 1.5830 -12.8269 -0.2348 42 1 3.5081 -12.0102 1.0379 43 1 2.9609 -12.8878 2.4866 44 1 -1.1329 -12.3919 0.4605 45 1 -1.1222 -10.6179 0.9643 46 1 -0.3943 -11.2862 3.3008 47 1 -0.4050 -13.0602 2.7967 48 1 2.5764 -8.1228 1.6583 49 1 3.3566 -8.3642 0.0739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208705155.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:46 Heat of formation + Delta-G solvation = -101.784780 kcal Electronic energy + Delta-G solvation = -30133.039773 eV Core-core repulsion = 25816.777579 eV Total energy + Delta-G solvation = -4316.262194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.96078 -41.01250 -38.74979 -37.94769 -37.10140 -35.12811 -33.86172 -32.43433 -31.83057 -31.26102 -30.18156 -26.41046 -26.25147 -24.49757 -23.96178 -23.04200 -22.79662 -22.50318 -20.30152 -19.31061 -18.84404 -17.90374 -17.30814 -16.73699 -16.61562 -16.28371 -16.20438 -15.42911 -15.36083 -15.11958 -15.05143 -14.63526 -14.47280 -14.36661 -14.02561 -13.90218 -13.78906 -13.47026 -13.32303 -13.03789 -12.82790 -12.43867 -12.28396 -12.04648 -11.93162 -11.88683 -11.54583 -11.48722 -11.32790 -11.14885 -11.11329 -10.96429 -10.89514 -10.81650 -10.53208 -10.34929 -10.23551 -9.97823 -9.53097 -8.95216 -8.48422 -8.13218 -7.97420 -6.42847 -3.83608 2.21357 2.51807 3.10063 3.15778 3.26465 3.33884 3.79357 3.89067 3.99602 4.06629 4.21735 4.22824 4.27255 4.47241 4.55601 4.63117 4.66913 4.71243 4.76068 4.84122 4.94688 5.03014 5.11605 5.13486 5.19690 5.23631 5.28013 5.32355 5.38487 5.43831 5.49253 5.56150 5.61094 5.63292 5.68093 5.75280 5.82900 5.93144 6.01019 6.11545 6.20262 6.29632 7.04426 7.16728 7.54573 7.58305 7.82542 8.05350 8.59878 9.16886 9.52968 10.04212 10.74967 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.001947 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.542484 B =14378.939076 C =14585.644617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.661 5.661 14 C 0.076 3.924 15 H 0.045 0.955 16 C -0.110 4.110 17 C -0.134 4.134 18 C 0.103 3.897 19 N -0.602 5.602 20 C 0.549 3.451 21 O -0.533 6.533 22 C -0.160 4.160 23 C -0.106 4.106 24 C 0.060 3.940 25 F -0.217 7.217 26 C -0.157 4.157 27 C -0.141 4.141 28 C 0.109 3.891 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.351 0.649 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.092 0.908 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 -27.482 -0.946 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.294 5.294 14 C -0.035 4.035 15 H 0.063 0.937 16 C -0.149 4.149 17 C -0.173 4.173 18 C -0.020 4.020 19 N -0.335 5.335 20 C 0.336 3.664 21 O -0.409 6.409 22 C -0.163 4.163 23 C -0.144 4.144 24 C 0.005 3.995 25 F -0.199 7.199 26 C -0.195 4.195 27 C -0.179 4.179 28 C -0.013 4.013 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.172 0.828 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.110 0.890 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.797 -27.132 -1.050 27.417 hybrid contribution -0.652 0.934 0.745 1.361 sum -4.449 -26.198 -0.304 26.575 Atomic orbital electron populations 1.69615 1.05946 1.28068 1.50705 1.25271 0.95648 0.99758 0.97343 0.85795 0.79729 0.81097 0.77698 1.19196 1.20736 1.20771 1.19756 0.93407 0.82192 1.47425 0.87841 1.41869 1.09196 1.04622 1.64372 1.19781 0.88383 0.84682 0.84522 1.90529 1.13718 1.87042 1.55343 1.21711 0.94289 0.90862 1.01154 1.60093 1.18721 0.99305 1.51289 1.21825 0.95785 0.89356 0.96521 0.93719 1.21560 1.00919 0.95994 0.96393 1.22013 0.98583 0.95241 1.01425 1.21995 0.98698 0.98149 0.83130 1.48014 1.58965 1.18546 1.07976 1.19509 0.79556 0.83846 0.83481 1.90730 1.49647 1.73219 1.27304 1.21262 0.91832 0.95043 1.08192 1.21681 0.94712 0.96599 1.01364 1.21992 0.91480 0.85141 1.00841 1.92770 1.82004 1.53413 1.91666 1.23161 0.92995 1.03950 0.99344 1.23117 0.98754 1.03410 0.92576 1.21787 0.95643 0.81057 1.02848 0.91921 0.77483 0.89594 0.93863 0.82846 0.91277 0.90776 0.91565 0.90302 0.90921 0.89257 0.89383 0.89806 0.90886 0.90003 0.87468 0.87945 0.87816 0.87569 0.89005 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 11 O -0.58 -15.80 15.78 5.55 0.09 -15.72 16 12 C 0.05 0.92 5.97 -4.98 -0.03 0.89 16 13 N -0.66 -10.39 5.93 -107.86 -0.64 -11.03 16 14 C 0.08 0.91 2.64 -67.59 -0.18 0.73 16 15 H 0.04 0.56 7.80 -51.93 -0.41 0.16 16 16 C -0.11 -1.13 5.40 -26.69 -0.14 -1.27 16 17 C -0.13 -0.95 6.10 -26.38 -0.16 -1.11 16 18 C 0.10 0.69 6.11 -3.48 -0.02 0.67 16 19 N -0.60 -5.71 2.97 -172.50 -0.51 -6.22 16 20 C 0.55 5.77 5.33 -10.98 -0.06 5.71 16 21 O -0.53 -7.69 16.43 5.56 0.09 -7.60 16 22 C -0.16 -1.14 1.02 -155.66 -0.16 -1.30 16 23 C -0.11 -0.63 5.61 -26.73 -0.15 -0.78 16 24 C 0.06 0.49 6.90 37.16 0.26 0.74 16 25 F -0.22 -2.13 17.36 2.25 0.04 -2.09 16 26 C -0.16 -0.83 8.57 -26.73 -0.23 -1.06 16 27 C -0.14 -0.91 9.80 -26.73 -0.26 -1.17 16 28 C 0.11 1.24 5.68 -3.71 -0.02 1.22 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 30 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 31 H 0.09 1.38 7.43 -51.92 -0.39 0.99 16 32 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.35 5.81 8.06 -39.29 -0.32 5.49 16 34 H 0.07 0.76 7.44 -51.93 -0.39 0.38 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.45 4.41 -51.93 -0.23 0.22 16 40 H 0.09 0.42 7.94 -51.93 -0.41 0.01 16 41 H 0.08 0.41 7.20 -51.93 -0.37 0.03 16 42 H 0.07 0.64 7.43 -51.93 -0.39 0.25 16 43 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.11 0.50 8.08 -51.93 -0.42 0.08 16 48 H 0.09 1.19 7.04 -51.93 -0.37 0.83 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -33.21 397.32 -8.52 -41.73 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -7.74 Total: 11.48 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.48 Total: 5.57 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.49 Total: -55.44 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.18 Total: -23.31 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.21 -8.52 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208705155.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.050 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds