Wall clock time and date at job start Wed Apr 1 2020 01:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47071 * 239.99877 * 3 2 1 5 5 H 1.48496 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47603 * 119.99895 * 3 2 1 7 7 C 1.38955 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99885 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99848 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99978 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47109 * 180.02562 * 12 10 9 14 14 C 1.46846 * 110.99676 * 294.20858 * 13 12 10 15 15 C 1.53035 * 109.52070 * 174.15755 * 14 13 12 16 16 C 1.53129 * 109.27791 * 59.18212 * 15 14 13 17 17 N 1.46494 * 109.52282 * 182.43792 * 16 15 14 18 18 C 1.34777 * 120.00036 * 274.67729 * 17 16 15 19 19 O 1.21275 * 119.99825 * 0.02562 * 18 17 16 20 20 C 1.50702 * 120.00044 * 179.97438 * 18 17 16 21 21 H 1.08998 * 110.43749 * 300.71060 * 20 18 17 22 22 C 1.54263 * 110.48796 * 178.16150 * 20 18 17 23 23 C 1.53873 * 106.60271 * 217.71517 * 22 20 18 24 24 C 1.54264 * 106.59731 * 0.02562 * 23 22 20 25 25 H 1.08999 * 110.48794 * 142.41712 * 24 23 22 26 26 F 1.39899 * 110.49017 * 264.93230 * 24 23 22 27 27 C 1.54897 * 110.48137 * 63.24588 * 20 18 17 28 28 C 1.53119 * 109.15676 * 302.34599 * 16 15 14 29 29 C 1.46844 * 111.00112 * 169.99735 * 13 12 10 30 30 H 0.96996 * 120.00275 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00385 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.46894 * 60.00096 * 12 10 9 33 33 H 1.09004 * 109.47113 * 300.00247 * 12 10 9 34 34 H 1.08992 * 109.46292 * 294.17523 * 14 13 12 35 35 H 1.09001 * 109.46243 * 54.14545 * 14 13 12 36 36 H 1.08997 * 109.51198 * 299.24261 * 15 14 13 37 37 H 1.09005 * 109.53513 * 179.13568 * 15 14 13 38 38 H 1.09003 * 109.51775 * 62.24652 * 16 15 14 39 39 H 0.97005 * 120.00188 * 94.68248 * 17 16 15 40 40 H 1.09001 * 110.03192 * 337.00364 * 22 20 18 41 41 H 1.09003 * 110.02823 * 98.38476 * 22 20 18 42 42 H 1.08998 * 110.03090 * 119.28502 * 23 22 20 43 43 H 1.08998 * 110.03014 * 240.71970 * 23 22 20 44 44 H 1.08998 * 110.75700 * 274.93495 * 27 20 18 45 45 H 1.08994 * 110.75685 * 38.30929 * 27 20 18 46 46 H 1.08999 * 109.50171 * 297.70833 * 28 16 15 47 47 H 1.09004 * 109.50228 * 177.59542 * 28 16 15 48 48 H 1.09001 * 109.46487 * 305.85957 * 29 13 12 49 49 H 1.09006 * 109.46207 * 65.82260 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9796 0.0007 14 6 2.9685 -6.0142 -1.2491 15 6 4.0484 -7.0945 -1.1546 16 6 3.3851 -8.4517 -0.9041 17 7 4.4170 -9.4808 -0.7547 18 6 4.9290 -10.0850 -1.8453 19 8 4.5357 -9.7765 -2.9502 20 6 5.9910 -11.1432 -1.6916 21 1 6.8650 -10.7344 -1.1847 22 6 6.3845 -11.7171 -3.0684 23 6 6.6230 -13.2236 -2.8648 24 6 6.3655 -13.5127 -1.3716 25 1 5.8732 -14.4774 -1.2492 26 9 7.5653 -13.4818 -0.6528 27 6 5.4337 -12.3614 -0.9140 28 6 2.5503 -8.3743 0.3771 29 6 1.5140 -7.2569 0.2383 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3907 -0.0002 32 1 0.6175 -4.9205 -0.8902 33 1 0.6167 -4.9209 0.8897 34 1 2.3012 -6.2396 -2.0808 35 1 3.4384 -5.0444 -1.4131 36 1 4.7243 -6.8625 -0.3316 37 1 4.6103 -7.1308 -2.0879 38 1 2.7388 -8.7020 -1.7454 39 1 4.7318 -9.7273 0.1291 40 1 5.5766 -11.5602 -3.7831 41 1 7.2967 -11.2388 -3.4253 42 1 5.9309 -13.7977 -3.4807 43 1 7.6513 -13.4769 -3.1226 44 1 5.5122 -12.2020 0.1614 45 1 4.4021 -12.5641 -1.2013 46 1 3.2027 -8.1623 1.2242 47 1 2.0414 -9.3247 0.5379 48 1 0.9273 -7.1897 1.1545 49 1 0.8533 -7.4765 -0.6005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228843284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:44 Heat of formation + Delta-G solvation = -134.579832 kcal Electronic energy + Delta-G solvation = -29713.121236 eV Core-core repulsion = 25395.436942 eV Total energy + Delta-G solvation = -4317.684294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.02877 -40.46021 -39.09376 -37.74665 -36.87250 -35.01361 -33.84459 -31.88559 -31.18141 -30.71797 -29.53844 -28.90269 -27.05427 -24.62242 -23.24576 -23.08847 -21.85492 -21.05847 -20.32028 -19.60944 -19.17358 -17.91681 -17.84400 -16.76846 -16.31586 -16.18927 -15.91749 -15.69654 -15.21683 -14.98774 -14.87917 -14.57114 -14.45959 -14.02104 -13.80186 -13.74842 -13.49231 -13.40506 -13.14993 -13.07822 -12.50547 -12.30496 -11.95683 -11.84256 -11.74634 -11.64563 -11.48640 -11.36319 -11.25080 -11.15965 -11.08110 -11.03646 -10.97348 -10.63907 -10.50819 -10.42689 -10.20062 -9.89052 -9.46280 -9.13734 -8.41946 -7.96277 -7.82780 -6.40284 -3.80981 2.42264 2.93790 3.21067 3.26657 3.31053 3.75304 3.84815 3.91738 3.99551 4.18662 4.25492 4.29413 4.58592 4.67383 4.79970 4.86358 4.90261 4.94792 4.97083 5.04501 5.07828 5.11572 5.23222 5.26612 5.34261 5.44021 5.49612 5.57201 5.60074 5.64730 5.69370 5.79867 5.81572 5.83746 5.89256 5.98153 6.01075 6.11417 6.26636 6.31693 6.48035 6.55403 7.27512 7.34105 7.43788 7.56411 8.03865 8.07834 8.63496 9.19571 9.56128 10.08102 10.77393 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.001773 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.064876 B =15786.004182 C =16168.964443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.516 5.516 14 C 0.055 3.945 15 C -0.120 4.120 16 C 0.142 3.858 17 N -0.723 5.723 18 C 0.520 3.480 19 O -0.537 6.537 20 C -0.116 4.116 21 H 0.105 0.895 22 C -0.112 4.112 23 C -0.150 4.150 24 C 0.085 3.915 25 H 0.092 0.908 26 F -0.209 7.209 27 C -0.138 4.138 28 C -0.120 4.120 29 C 0.058 3.942 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.023 0.977 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.399 0.601 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -27.511 -1.254 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.085 4.085 13 N -0.241 5.241 14 C -0.073 4.073 15 C -0.159 4.159 16 C 0.038 3.962 17 N -0.373 5.373 18 C 0.306 3.694 19 O -0.413 6.413 20 C -0.137 4.137 21 H 0.123 0.877 22 C -0.150 4.150 23 C -0.188 4.188 24 C 0.048 3.952 25 H 0.110 0.890 26 F -0.190 7.190 27 C -0.176 4.176 28 C -0.158 4.158 29 C -0.071 4.071 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.865 -27.036 -1.665 27.943 hybrid contribution -0.616 0.689 -0.099 0.929 sum 6.249 -26.347 -1.764 27.136 Atomic orbital electron populations 1.69602 1.05919 1.28226 1.50619 1.25257 0.95633 0.99701 0.97371 0.85920 0.78753 0.80500 0.79053 1.19943 1.21009 1.19910 1.19645 0.93321 0.82228 1.47627 0.87980 1.41864 1.09180 1.04585 1.64471 1.19747 0.88419 0.84553 0.84385 1.90484 1.13693 1.86878 1.55085 1.21833 0.93934 0.91214 1.01518 1.61540 1.24998 1.01323 1.36214 1.22211 0.94981 1.01357 0.88712 1.21910 0.98591 0.92895 1.02457 1.21134 0.88914 0.87430 0.98704 1.46117 1.41673 1.40355 1.09152 1.20415 0.82470 0.81980 0.84513 1.90703 1.60786 1.64465 1.25387 1.22191 0.97963 0.94618 0.98946 0.87664 1.22070 1.03164 0.93735 0.96015 1.22796 1.03587 0.97477 0.94908 1.22377 0.81749 0.99933 0.91111 0.89026 1.92828 1.48501 1.97858 1.79819 1.23113 1.00017 0.93414 1.01079 1.21826 0.98164 0.98277 0.97527 1.22025 0.94923 0.89239 1.00888 0.91853 0.77501 0.93466 0.89325 0.95872 0.87535 0.90731 0.91477 0.89833 0.76662 0.89235 0.90876 0.89823 0.90113 0.89422 0.89100 0.90344 0.91233 0.90301 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.33 16 10 C 0.44 10.42 7.46 -10.98 -0.08 10.33 16 11 O -0.58 -15.41 13.90 5.54 0.08 -15.34 16 12 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 13 N -0.52 -8.43 4.40 -236.12 -1.04 -9.47 16 14 C 0.06 0.93 5.11 -3.84 -0.02 0.91 16 15 C -0.12 -1.71 5.67 -26.65 -0.15 -1.86 16 16 C 0.14 1.63 2.52 -67.81 -0.17 1.46 16 17 N -0.72 -6.68 5.05 -53.68 -0.27 -6.95 16 18 C 0.52 5.48 7.11 -10.98 -0.08 5.40 16 19 O -0.54 -7.83 15.10 5.56 0.08 -7.75 16 20 C -0.12 -0.87 3.25 -90.11 -0.29 -1.16 16 21 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 22 C -0.11 -0.86 6.17 -25.62 -0.16 -1.01 16 23 C -0.15 -0.85 6.61 -25.62 -0.17 -1.02 16 24 C 0.08 0.48 4.66 -25.01 -0.12 0.36 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 26 F -0.21 -1.72 17.17 2.25 0.04 -1.68 16 27 C -0.14 -0.75 6.09 -24.67 -0.15 -0.90 16 28 C -0.12 -1.20 5.57 -26.65 -0.15 -1.35 16 29 C 0.06 0.71 5.46 -3.84 -0.02 0.69 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 32 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.09 1.40 7.99 -51.93 -0.41 0.99 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.11 2.18 5.78 -51.93 -0.30 1.88 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 39 H 0.40 2.65 8.61 -40.82 -0.35 2.30 16 40 H 0.09 0.83 6.87 -51.93 -0.36 0.48 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.47 8.05 -51.93 -0.42 0.05 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 49 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -33.14 393.18 -9.34 -42.49 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -7.98 Total: 10.18 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.83 Total: 4.66 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.64 Total: -54.59 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.16 Total: -23.09 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.14 -9.34 -42.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228843284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.094 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds