Wall clock time and date at job start Wed Apr 1 2020 00:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48494 * 109.47401 * 270.00445 * 3 2 1 5 5 H 1.48504 * 109.47024 * 30.00328 * 3 2 1 6 6 H 1.48496 * 109.47192 * 149.99814 * 3 2 1 7 7 C 1.38948 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00158 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00422 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00628 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99816 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00316 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47373 * 173.78073 * 12 10 9 14 14 C 1.46850 * 110.99935 * 293.65116 * 13 12 10 15 15 C 1.53035 * 109.52027 * 174.15752 * 14 13 12 16 16 C 1.53117 * 109.27980 * 59.17581 * 15 14 13 17 17 N 1.46504 * 109.52552 * 182.37658 * 16 15 14 18 18 C 1.34777 * 120.00205 * 204.87352 * 17 16 15 19 19 O 1.21290 * 119.99791 * 0.02562 * 18 17 16 20 20 C 1.50694 * 120.00168 * 179.97438 * 18 17 16 21 21 C 1.52998 * 112.84769 * 48.80219 * 20 18 17 22 22 F 1.39903 * 109.47075 * 189.66694 * 21 20 18 23 23 C 1.53784 * 113.61519 * 277.49772 * 20 18 17 24 24 C 1.53777 * 87.08302 * 220.01821 * 23 20 18 25 25 C 1.53777 * 113.61572 * 179.97438 * 20 18 17 26 26 C 1.53112 * 109.21534 * 302.31326 * 16 15 14 27 27 C 1.46839 * 111.00327 * 169.43457 * 13 12 10 28 28 H 0.97000 * 119.99576 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99842 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46900 * 53.78588 * 12 10 9 31 31 H 1.08997 * 109.46995 * 293.78765 * 12 10 9 32 32 H 1.09000 * 109.46530 * 54.14016 * 14 13 12 33 33 H 1.09005 * 109.45066 * 294.16410 * 14 13 12 34 34 H 1.08996 * 109.50446 * 299.23451 * 15 14 13 35 35 H 1.09000 * 109.50158 * 179.11335 * 15 14 13 36 36 H 1.09008 * 109.52228 * 62.25079 * 16 15 14 37 37 H 0.96996 * 119.99642 * 24.87375 * 17 16 15 38 38 H 1.08995 * 109.47437 * 309.66916 * 21 20 18 39 39 H 1.09000 * 109.46911 * 69.67155 * 21 20 18 40 40 H 1.08996 * 113.61409 * 334.56976 * 23 20 18 41 41 H 1.09006 * 113.61041 * 105.46710 * 23 20 18 42 42 H 1.08999 * 113.61490 * 270.88676 * 24 23 20 43 43 H 1.08994 * 113.62003 * 139.98319 * 24 23 20 44 44 H 1.08996 * 113.61833 * 254.52799 * 25 20 18 45 45 H 1.09000 * 113.61615 * 25.43557 * 25 20 18 46 46 H 1.09003 * 109.51181 * 177.62556 * 26 16 15 47 47 H 1.09007 * 109.50233 * 297.74573 * 26 16 15 48 48 H 1.09005 * 109.46401 * 305.85970 * 27 13 12 49 49 H 1.09002 * 109.46188 * 65.82231 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0021 11 8 3.4473 -3.4210 -0.0031 12 6 5.5607 -2.3706 -0.0021 13 7 6.0504 -3.7476 0.1467 14 6 5.7073 -4.2882 1.4682 15 6 6.1021 -5.7653 1.5347 16 6 7.6066 -5.8983 1.2830 17 7 7.9807 -7.3148 1.2891 18 6 9.2438 -7.6769 1.5889 19 8 10.0707 -6.8301 1.8541 20 6 9.6285 -9.1339 1.5958 21 6 9.1740 -9.8743 0.3364 22 9 9.3665 -11.2492 0.5087 23 6 9.2689 -9.8598 2.9030 24 6 10.6186 -10.5862 2.7787 25 6 11.1030 -9.3800 1.9562 26 6 7.9458 -5.2855 -0.0785 27 6 7.4964 -3.8213 -0.0982 28 1 -0.4849 0.8401 0.0004 29 1 3.8649 -0.3633 -0.0007 30 1 5.9240 -1.7642 0.8276 31 1 5.9240 -1.9553 -0.9421 32 1 4.6342 -4.1913 1.6329 33 1 6.2444 -3.7337 2.2379 34 1 5.5552 -6.3227 0.7743 35 1 5.8617 -6.1621 2.5210 36 1 8.1547 -5.3734 2.0655 37 1 7.3193 -7.9919 1.0774 38 1 8.1172 -9.6748 0.1591 39 1 9.7570 -9.5300 -0.5178 40 1 9.2070 -9.1982 3.7670 41 1 8.4071 -10.5211 2.8123 42 1 10.5651 -11.5119 2.2057 43 1 11.1397 -10.7049 3.7286 44 1 11.7215 -9.6542 1.1016 45 1 11.5428 -8.5873 2.5613 46 1 9.0218 -5.3397 -0.2443 47 1 7.4278 -5.8354 -0.8644 48 1 7.7227 -3.3852 -1.0712 49 1 8.0249 -3.2690 0.6789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229289645.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:37 Heat of formation + Delta-G solvation = -94.939407 kcal Electronic energy + Delta-G solvation = -30111.748197 eV Core-core repulsion = 25795.782840 eV Total energy + Delta-G solvation = -4315.965356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.24043 -40.86713 -39.38422 -38.21677 -37.36222 -35.14321 -33.92433 -32.05206 -31.61541 -30.83223 -29.59336 -27.32493 -26.15643 -25.04249 -24.23004 -23.26243 -22.66969 -21.09156 -20.19820 -19.36697 -19.20447 -18.29526 -18.03488 -16.80279 -16.45486 -16.16312 -16.05272 -15.82188 -15.34579 -15.07376 -14.96545 -14.83562 -14.55873 -14.07329 -13.97581 -13.67892 -13.57780 -13.20059 -13.11272 -12.89954 -12.77392 -12.58203 -12.49184 -12.23436 -11.92726 -11.66915 -11.58449 -11.48914 -11.37395 -11.20445 -11.16945 -10.89844 -10.76470 -10.66683 -10.60850 -10.50878 -9.99325 -9.93415 -9.55017 -9.28135 -8.58365 -8.19055 -7.98884 -6.32383 -3.83681 2.23921 2.81199 3.01494 3.05902 3.14191 3.73179 3.74442 3.88422 3.94851 3.96257 4.09182 4.21863 4.36267 4.56231 4.64708 4.68240 4.73679 4.84369 4.99853 5.02923 5.08288 5.18592 5.21656 5.27954 5.35316 5.37145 5.41308 5.50464 5.55384 5.56229 5.59159 5.65070 5.70263 5.73088 5.88070 5.90692 5.93524 5.98824 6.04127 6.14004 6.31091 6.33185 7.12474 7.20595 7.29655 7.57621 7.89724 8.13242 8.59265 8.94144 9.41489 9.82545 10.80710 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.031269 B = 0.001904 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.237449 B =14704.477469 C =15029.012164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.452 3.548 11 O -0.559 6.559 12 C 0.043 3.957 13 N -0.515 5.515 14 C 0.058 3.942 15 C -0.119 4.119 16 C 0.142 3.858 17 N -0.722 5.722 18 C 0.533 3.467 19 O -0.532 6.532 20 C -0.149 4.149 21 C 0.090 3.910 22 F -0.205 7.205 23 C -0.116 4.116 24 C -0.145 4.145 25 C -0.110 4.110 26 C -0.122 4.122 27 C 0.058 3.942 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.026 0.974 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.400 0.600 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.838 -16.776 3.224 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.232 5.232 10 C 0.238 3.762 11 O -0.440 6.440 12 C -0.088 4.088 13 N -0.240 5.240 14 C -0.070 4.070 15 C -0.157 4.157 16 C 0.038 3.962 17 N -0.372 5.372 18 C 0.318 3.682 19 O -0.408 6.408 20 C -0.152 4.152 21 C 0.035 3.965 22 F -0.186 7.186 23 C -0.153 4.153 24 C -0.183 4.183 25 C -0.147 4.147 26 C -0.161 4.161 27 C -0.071 4.071 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.234 0.766 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.116 0.884 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 21.577 -17.067 3.072 27.682 hybrid contribution 0.583 1.708 0.428 1.855 sum 22.160 -15.359 3.500 27.188 Atomic orbital electron populations 1.69621 1.05630 1.27479 1.49424 1.25039 0.95496 0.97979 0.97696 0.86675 0.79749 0.84076 0.78900 1.19609 1.20212 1.19550 1.19415 0.79216 0.96587 1.48035 0.86276 1.42235 1.07537 1.06180 1.67204 1.19654 0.88080 0.84530 0.83966 1.90539 1.69344 1.30796 1.53341 1.21881 0.95536 0.89534 1.01852 1.61504 1.12380 1.19550 1.30569 1.22129 1.03404 0.93197 0.88262 1.21827 0.93446 0.98004 1.02430 1.21154 0.96183 0.80552 0.98302 1.46196 1.11356 1.09069 1.70586 1.20018 0.82215 0.89671 0.76259 1.90709 1.49922 1.52062 1.48148 1.22864 1.01382 0.93007 0.97973 1.21614 1.02537 0.75929 0.96420 1.92750 1.96795 1.32482 1.96548 1.22836 0.99180 0.98547 0.94760 1.23025 0.96019 0.98298 1.00908 1.22856 0.92531 0.98630 1.00729 1.21951 1.00932 0.95886 0.97331 1.22074 0.87847 0.96057 1.01084 0.91628 0.79742 0.93456 0.89052 0.87849 0.95572 0.90101 0.91115 0.89751 0.76571 0.90008 0.89662 0.89332 0.90223 0.88571 0.91051 0.90828 0.88373 0.91273 0.90675 0.90421 0.94981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 8 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 9 N -0.59 -13.84 5.09 -10.96 -0.06 -13.89 16 10 C 0.45 9.97 7.31 -10.99 -0.08 9.89 16 11 O -0.56 -14.39 14.28 5.55 0.08 -14.31 16 12 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 13 N -0.52 -7.85 4.35 -236.03 -1.03 -8.87 16 14 C 0.06 0.86 5.12 -3.83 -0.02 0.84 16 15 C -0.12 -1.37 5.57 -26.65 -0.15 -1.52 16 16 C 0.14 1.52 2.52 -67.81 -0.17 1.35 16 17 N -0.72 -6.24 4.97 -53.69 -0.27 -6.51 16 18 C 0.53 5.25 6.90 -10.99 -0.08 5.18 16 19 O -0.53 -7.26 15.56 5.55 0.09 -7.18 16 20 C -0.15 -1.10 1.26 -154.85 -0.19 -1.29 16 21 C 0.09 0.54 6.96 37.16 0.26 0.80 16 22 F -0.20 -1.54 14.57 2.25 0.03 -1.51 16 23 C -0.12 -0.78 6.96 -25.92 -0.18 -0.96 16 24 C -0.15 -0.95 7.57 -25.90 -0.20 -1.15 16 25 C -0.11 -0.84 6.97 -25.90 -0.18 -1.02 16 26 C -0.12 -1.34 5.68 -26.58 -0.15 -1.49 16 27 C 0.06 0.70 5.46 -3.77 -0.02 0.68 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 30 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.09 1.31 7.98 -51.93 -0.41 0.90 16 32 H 0.10 1.88 6.05 -51.93 -0.31 1.56 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.04 7.58 -51.92 -0.39 0.65 16 37 H 0.40 2.56 7.51 -40.82 -0.31 2.25 16 38 H 0.08 0.36 7.04 -51.93 -0.37 -0.01 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 42 H 0.10 0.64 6.44 -51.93 -0.33 0.30 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 45 H 0.10 0.88 7.43 -51.93 -0.39 0.50 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 49 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -33.37 387.62 -8.47 -41.84 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.78 Total: 10.46 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.43 Total: 4.39 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.57 Total: -54.03 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.17 Total: -21.49 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.03 Total: -1.51 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.37 -8.47 -41.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229289645.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.102 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds