Wall clock time and date at job start Wed Apr 1 2020 00:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48494 * 109.47401 * 270.00445 * 3 2 1 5 5 H 1.48504 * 109.47024 * 30.00328 * 3 2 1 6 6 H 1.48496 * 109.47192 * 149.99814 * 3 2 1 7 7 C 1.38948 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00158 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00422 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00628 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99816 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00316 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47373 * 173.78073 * 12 10 9 14 14 C 1.46850 * 110.99935 * 293.65116 * 13 12 10 15 15 C 1.53035 * 109.52027 * 174.15752 * 14 13 12 16 16 C 1.53117 * 109.27980 * 59.17581 * 15 14 13 17 17 N 1.46504 * 109.52552 * 182.37658 * 16 15 14 18 18 C 1.34777 * 120.00205 * 204.87352 * 17 16 15 19 19 O 1.21290 * 119.99791 * 0.02562 * 18 17 16 20 20 C 1.50694 * 120.00168 * 179.97438 * 18 17 16 21 21 C 1.52998 * 112.84769 * 48.80219 * 20 18 17 22 22 F 1.39903 * 109.47075 * 189.66694 * 21 20 18 23 23 C 1.53784 * 113.61519 * 277.49772 * 20 18 17 24 24 C 1.53777 * 87.08302 * 220.01821 * 23 20 18 25 25 C 1.53777 * 113.61572 * 179.97438 * 20 18 17 26 26 C 1.53112 * 109.21534 * 302.31326 * 16 15 14 27 27 C 1.46839 * 111.00327 * 169.43457 * 13 12 10 28 28 H 0.97000 * 119.99576 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99842 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46900 * 53.78588 * 12 10 9 31 31 H 1.08997 * 109.46995 * 293.78765 * 12 10 9 32 32 H 1.09000 * 109.46530 * 54.14016 * 14 13 12 33 33 H 1.09005 * 109.45066 * 294.16410 * 14 13 12 34 34 H 1.08996 * 109.50446 * 299.23451 * 15 14 13 35 35 H 1.09000 * 109.50158 * 179.11335 * 15 14 13 36 36 H 1.09008 * 109.52228 * 62.25079 * 16 15 14 37 37 H 0.96996 * 119.99642 * 24.87375 * 17 16 15 38 38 H 1.08995 * 109.47437 * 309.66916 * 21 20 18 39 39 H 1.09000 * 109.46911 * 69.67155 * 21 20 18 40 40 H 1.08996 * 113.61409 * 334.56976 * 23 20 18 41 41 H 1.09006 * 113.61041 * 105.46710 * 23 20 18 42 42 H 1.08999 * 113.61490 * 270.88676 * 24 23 20 43 43 H 1.08994 * 113.62003 * 139.98319 * 24 23 20 44 44 H 1.08996 * 113.61833 * 254.52799 * 25 20 18 45 45 H 1.09000 * 113.61615 * 25.43557 * 25 20 18 46 46 H 1.09003 * 109.51181 * 177.62556 * 26 16 15 47 47 H 1.09007 * 109.50233 * 297.74573 * 26 16 15 48 48 H 1.09005 * 109.46401 * 305.85970 * 27 13 12 49 49 H 1.09002 * 109.46188 * 65.82231 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0021 11 8 3.4473 -3.4210 -0.0031 12 6 5.5607 -2.3706 -0.0021 13 7 6.0504 -3.7476 0.1467 14 6 5.7073 -4.2882 1.4682 15 6 6.1021 -5.7653 1.5347 16 6 7.6066 -5.8983 1.2830 17 7 7.9807 -7.3148 1.2891 18 6 9.2438 -7.6769 1.5889 19 8 10.0707 -6.8301 1.8541 20 6 9.6285 -9.1339 1.5958 21 6 9.1740 -9.8743 0.3364 22 9 9.3665 -11.2492 0.5087 23 6 9.2689 -9.8598 2.9030 24 6 10.6186 -10.5862 2.7787 25 6 11.1030 -9.3800 1.9562 26 6 7.9458 -5.2855 -0.0785 27 6 7.4964 -3.8213 -0.0982 28 1 -0.4849 0.8401 0.0004 29 1 3.8649 -0.3633 -0.0007 30 1 5.9240 -1.7642 0.8276 31 1 5.9240 -1.9553 -0.9421 32 1 4.6342 -4.1913 1.6329 33 1 6.2444 -3.7337 2.2379 34 1 5.5552 -6.3227 0.7743 35 1 5.8617 -6.1621 2.5210 36 1 8.1547 -5.3734 2.0655 37 1 7.3193 -7.9919 1.0774 38 1 8.1172 -9.6748 0.1591 39 1 9.7570 -9.5300 -0.5178 40 1 9.2070 -9.1982 3.7670 41 1 8.4071 -10.5211 2.8123 42 1 10.5651 -11.5119 2.2057 43 1 11.1397 -10.7049 3.7286 44 1 11.7215 -9.6542 1.1016 45 1 11.5428 -8.5873 2.5613 46 1 9.0218 -5.3397 -0.2443 47 1 7.4278 -5.8354 -0.8644 48 1 7.7227 -3.3852 -1.0712 49 1 8.0249 -3.2690 0.6789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229289645.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:36 Heat of formation + Delta-G solvation = -119.697468 kcal Electronic energy + Delta-G solvation = -30112.821787 eV Core-core repulsion = 25795.782840 eV Total energy + Delta-G solvation = -4317.038946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.76294 -41.63635 -40.68042 -39.47698 -38.32614 -36.26088 -35.77366 -33.74944 -32.95527 -31.83280 -30.26040 -28.68364 -26.76406 -26.30052 -25.32190 -24.29053 -23.71854 -21.86363 -21.24845 -21.11401 -20.19264 -19.85950 -18.72600 -17.76917 -17.55292 -16.98860 -16.93542 -16.70069 -16.62515 -16.36518 -16.12968 -15.69701 -15.50363 -15.41794 -15.09114 -14.91125 -14.63281 -14.49577 -14.29674 -14.14622 -13.83056 -13.49813 -13.38050 -13.25862 -13.14764 -12.96484 -12.72808 -12.43955 -12.39092 -12.23183 -12.16469 -11.98317 -11.97043 -11.84314 -11.62481 -11.41302 -11.30284 -11.19000 -10.75573 -10.34370 -10.21740 -10.11370 -9.20958 -8.39876 -5.99979 1.30632 1.35897 1.44404 1.47504 1.98414 2.04964 2.23583 2.61286 3.16185 3.18467 3.22448 3.36963 3.40593 3.61013 3.76424 3.82811 3.85675 4.02000 4.10068 4.13298 4.25693 4.27916 4.33395 4.40476 4.46585 4.50968 4.53183 4.56262 4.64625 4.72285 4.73685 4.81840 4.90843 4.95770 4.97604 5.03742 5.05040 5.12082 5.15653 5.28481 5.41740 5.47524 5.54730 5.91253 6.03369 6.20701 6.47939 6.61871 6.90701 7.15094 7.42453 7.99596 8.77662 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.031269 B = 0.001904 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.237449 B =14704.477469 C =15029.012164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.963 3.037 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.233 1.233 7 C -0.324 4.324 8 H 0.057 0.943 9 N -0.594 5.594 10 C 0.453 3.547 11 O -0.602 6.602 12 C 0.053 3.947 13 N -0.533 5.533 14 C 0.058 3.942 15 C -0.109 4.109 16 C 0.151 3.849 17 N -0.711 5.711 18 C 0.535 3.465 19 O -0.572 6.572 20 C -0.143 4.143 21 C 0.089 3.911 22 F -0.212 7.212 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.115 4.115 26 C -0.116 4.116 27 C 0.060 3.940 28 H 0.278 0.722 29 H 0.388 0.612 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.413 0.587 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.702 -16.161 2.920 29.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.156 1.156 7 C -0.453 4.453 8 H 0.075 0.925 9 N -0.237 5.237 10 C 0.240 3.760 11 O -0.486 6.486 12 C -0.078 4.078 13 N -0.258 5.258 14 C -0.070 4.070 15 C -0.147 4.147 16 C 0.046 3.954 17 N -0.361 5.361 18 C 0.322 3.678 19 O -0.451 6.451 20 C -0.147 4.147 21 C 0.034 3.966 22 F -0.193 7.193 23 C -0.152 4.152 24 C -0.176 4.176 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.068 4.068 28 H 0.088 0.912 29 H 0.224 0.776 30 H 0.092 0.908 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.250 0.750 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.111 0.889 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 24.456 -16.490 2.762 29.625 hybrid contribution -0.352 1.371 0.535 1.513 sum 24.104 -15.119 3.297 28.644 Atomic orbital electron populations 1.69803 1.08074 1.29126 1.50589 1.26089 0.96460 1.02648 0.96305 0.85383 0.79428 0.76933 0.79895 1.18176 1.20192 1.15624 1.18985 0.81443 0.94866 1.49997 0.92506 1.42070 1.05826 1.07616 1.68139 1.20857 0.90724 0.83323 0.81073 1.90525 1.71181 1.32478 1.54370 1.21823 0.90421 0.91041 1.04483 1.61472 1.14592 1.18978 1.30807 1.22026 1.00930 0.95380 0.88658 1.21707 0.94068 0.95955 1.02967 1.20922 0.94991 0.81537 0.97912 1.46063 1.11477 1.08651 1.69952 1.20376 0.81856 0.90331 0.75222 1.90694 1.51044 1.53334 1.49984 1.22869 1.01198 0.91488 0.99143 1.21732 1.03889 0.75227 0.95742 1.92737 1.96914 1.33081 1.96550 1.22846 0.99769 0.98455 0.94097 1.22990 0.95762 0.97843 1.01008 1.22852 0.92815 0.98667 1.00963 1.21888 1.00966 0.95360 0.97228 1.22145 0.85591 0.96933 1.02128 0.91241 0.77640 0.90792 0.86059 0.92019 0.94573 0.90652 0.89978 0.91015 0.75037 0.88089 0.88755 0.89968 0.89103 0.88280 0.90496 0.90330 0.90063 0.90969 0.90649 0.88942 0.94119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.96 21.66 0.30 -55.83 16 2 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 3 Si 0.96 38.62 27.74 68.60 1.90 40.53 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 7 C -0.32 -18.73 10.16 84.04 0.85 -17.88 16 8 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 9 N -0.59 -27.62 5.09 -306.99 -1.56 -29.19 16 10 C 0.45 19.95 7.31 87.66 0.64 20.59 16 11 O -0.60 -32.23 14.28 -3.07 -0.04 -32.28 16 12 C 0.05 1.61 5.45 85.56 0.47 2.07 16 13 N -0.53 -15.28 4.35 -900.65 -3.92 -19.20 16 14 C 0.06 1.68 5.12 86.32 0.44 2.13 16 15 C -0.11 -2.41 5.57 30.65 0.17 -2.23 16 16 C 0.15 2.97 2.52 45.07 0.11 3.09 16 17 N -0.71 -11.01 4.97 -442.15 -2.20 -13.21 16 18 C 0.54 9.81 6.90 87.65 0.60 10.42 16 19 O -0.57 -15.15 15.56 -3.06 -0.05 -15.20 16 20 C -0.14 -1.90 1.26 -52.40 -0.07 -1.96 16 21 C 0.09 0.86 6.96 71.98 0.50 1.37 16 22 F -0.21 -2.73 14.57 44.97 0.66 -2.08 16 23 C -0.11 -1.35 6.96 31.12 0.22 -1.14 16 24 C -0.14 -1.62 7.57 31.13 0.24 -1.38 16 25 C -0.12 -1.65 6.97 31.13 0.22 -1.43 16 26 C -0.12 -2.27 5.68 30.69 0.17 -2.10 16 27 C 0.06 1.27 5.46 86.37 0.47 1.75 16 28 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.39 14.99 5.76 -92.70 -0.53 14.46 16 30 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 31 H 0.12 2.99 7.98 -2.39 -0.02 2.97 16 32 H 0.06 2.31 6.05 -2.39 -0.01 2.30 16 33 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.66 7.58 -2.38 -0.02 1.64 16 37 H 0.41 4.36 7.51 -92.71 -0.70 3.66 16 38 H 0.10 0.60 7.04 -2.39 -0.02 0.58 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 41 H 0.09 0.89 8.06 -2.38 -0.02 0.87 16 42 H 0.10 1.13 6.44 -2.39 -0.02 1.12 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 45 H 0.08 1.46 7.43 -2.39 -0.02 1.44 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.09 1.72 8.01 -2.38 -0.02 1.70 16 49 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -77.98 387.62 0.29 -77.69 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.31 Total: 35.92 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 5.51 Total: 12.83 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -7.37 Total: -117.42 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -0.09 Total: -47.48 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.66 Total: -2.08 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.53 kcal Total: -77.98 0.29 -77.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229289645.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.003 kcal (2) G-P(sol) polarization free energy of solvation -77.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds