Wall clock time and date at job start Wed Apr 1 2020 00:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48499 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46910 * 299.99612 * 3 2 1 6 6 H 1.48501 * 109.47135 * 59.99916 * 3 2 1 7 7 C 1.38812 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00043 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99869 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85233 * 336.19808 * 10 9 7 12 12 C 1.53959 * 113.61462 * 107.46697 * 10 9 7 13 13 C 1.53783 * 87.01805 * 89.19674 * 12 10 9 14 14 H 1.08994 * 113.61838 * 270.76842 * 13 12 10 15 15 C 1.53005 * 113.61107 * 139.95025 * 13 12 10 16 16 N 1.46505 * 109.46784 * 85.86505 * 15 13 12 17 17 C 1.34777 * 120.00115 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99620 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00369 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47466 * 180.02562 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36827 * 125.06207 * 265.02682 * 21 20 19 23 23 C 1.34242 * 109.92705 * 180.02562 * 22 21 20 24 24 C 1.46494 * 106.99773 * 359.97438 * 23 22 21 25 25 C 1.39625 * 134.02960 * 180.02562 * 24 23 22 26 26 C 1.36634 * 119.76146 * 179.21830 * 25 24 23 27 27 C 1.38840 * 120.52273 * 0.70157 * 26 25 24 28 28 C 1.37742 * 120.66757 * 359.52886 * 27 26 25 29 29 C 1.37692 * 125.05862 * 84.72230 * 21 20 19 30 30 C 1.53775 * 87.17246 * 25.36564 * 13 12 10 31 31 H 0.96998 * 119.99898 * 0.02562 * 1 2 3 32 32 H 0.96996 * 119.99966 * 359.97438 * 9 7 2 33 33 H 1.09001 * 113.66612 * 334.67125 * 12 10 9 34 34 H 1.09003 * 113.61350 * 203.71738 * 12 10 9 35 35 H 1.09002 * 109.47193 * 325.87063 * 15 13 12 36 36 H 1.08992 * 109.47333 * 205.86062 * 15 13 12 37 37 H 0.97003 * 120.00244 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.47120 * 59.99760 * 19 17 16 39 39 H 1.08998 * 109.46862 * 300.00562 * 19 17 16 40 40 H 1.09002 * 109.47153 * 59.99773 * 20 19 17 41 41 H 1.09001 * 109.46832 * 299.99964 * 20 19 17 42 42 H 1.07999 * 125.03816 * 0.03238 * 22 21 20 43 43 H 1.08003 * 126.50304 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.11785 * 359.97438 * 25 24 23 45 45 H 1.07995 * 119.74031 * 180.23141 * 26 25 24 46 46 H 1.07996 * 119.66419 * 179.55696 * 27 26 25 47 47 H 1.08003 * 120.11091 * 180.02562 * 28 27 26 48 48 H 1.09004 * 113.61767 * 89.15455 * 30 13 12 49 49 H 1.09002 * 113.61653 * 219.97559 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0657 -3.5638 -0.4048 12 6 1.9999 -4.4025 1.3462 13 6 0.7223 -5.0804 0.8235 14 1 -0.1893 -4.5272 1.0494 15 6 0.6227 -6.5633 1.1871 16 7 0.0258 -6.7008 2.5179 17 6 -0.1617 -7.9252 3.0492 18 8 0.1634 -8.9131 2.4253 19 6 -0.7763 -8.0667 4.4178 20 6 -0.8758 -9.5495 4.7815 21 7 -1.4727 -9.6870 6.1123 22 6 -0.7702 -9.8126 7.2797 23 6 -1.6183 -9.9185 8.3149 24 6 -2.9748 -9.8550 7.7655 25 6 -4.2524 -9.9086 8.3261 26 6 -5.3513 -9.8030 7.5211 27 6 -5.2080 -9.6572 6.1478 28 6 -3.9571 -9.6068 5.5734 29 6 -2.8242 -9.7031 6.3751 30 6 1.2603 -4.8288 -0.5949 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3880 0.0005 33 1 1.8287 -3.7490 2.2016 34 1 2.8293 -5.0930 1.4989 35 1 1.6194 -7.0047 1.1886 36 1 -0.0006 -7.0759 0.4546 37 1 -0.2346 -5.9106 3.0167 38 1 -1.7728 -7.6250 4.4161 39 1 -0.1531 -7.5542 5.1506 40 1 0.1209 -9.9908 4.7834 41 1 -1.4988 -10.0623 4.0487 42 1 0.3070 -9.8246 7.3570 43 1 -1.3512 -10.0295 9.3555 44 1 -4.3715 -10.0209 9.3937 45 1 -6.3393 -9.8407 7.9555 46 1 -6.0862 -9.5822 5.5237 47 1 -3.8560 -9.4928 4.5042 48 1 1.8872 -5.6360 -0.9737 49 1 0.4927 -4.5202 -1.3047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263879120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:52 Heat of formation + Delta-G solvation = 50.196347 kcal Electronic energy + Delta-G solvation = -27712.482987 eV Core-core repulsion = 23833.580414 eV Total energy + Delta-G solvation = -3878.902573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61662 -39.97236 -38.60121 -37.35177 -34.82104 -34.10076 -33.26337 -31.46049 -30.30497 -29.50016 -28.97883 -27.32878 -25.13496 -24.59029 -23.62301 -22.81816 -21.82308 -21.67710 -20.66154 -20.32648 -18.50184 -17.77387 -17.38342 -16.77567 -16.64368 -16.17185 -15.95229 -15.67325 -15.15004 -14.89850 -14.60103 -14.31790 -14.15789 -13.96398 -13.75663 -13.56963 -13.24382 -13.00943 -12.93947 -12.82205 -12.80092 -12.32587 -11.99145 -11.91857 -11.65457 -11.59509 -11.46037 -11.09799 -11.09029 -10.90380 -10.55786 -10.30593 -10.16942 -9.96530 -9.85613 -9.75121 -9.53937 -9.12464 -8.94271 -8.43771 -7.92493 -7.05658 -5.86002 -3.15247 0.88444 1.38512 2.36838 2.41560 2.47385 3.14763 3.37881 3.43968 3.46028 3.68519 4.31517 4.33669 4.39254 4.51086 4.52206 4.66029 4.77337 4.88282 4.95085 4.97845 5.02594 5.04184 5.17106 5.20179 5.29640 5.39842 5.40360 5.43095 5.54385 5.57373 5.62633 5.68728 5.79309 5.81927 5.87703 6.03568 6.14149 6.22537 6.29383 6.30909 6.37492 6.51023 6.51952 6.54311 6.67324 6.82580 6.96700 6.97468 7.01758 7.34189 7.64641 8.01638 8.33098 9.43957 10.01033 10.35133 11.36422 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.001710 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.702843 B =16365.680541 C =17157.867230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.169 4.169 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.721 5.721 17 C 0.516 3.484 18 O -0.548 6.548 19 C -0.161 4.161 20 C 0.128 3.872 21 N -0.484 5.484 22 C 0.053 3.947 23 C -0.207 4.207 24 C -0.111 4.111 25 C -0.073 4.073 26 C -0.148 4.148 27 C -0.101 4.101 28 C -0.128 4.128 29 C 0.097 3.903 30 C -0.148 4.148 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.404 0.596 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.168 0.832 43 H 0.146 0.854 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.118 0.882 48 H 0.077 0.923 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 -22.315 14.779 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.210 4.210 13 C -0.139 4.139 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.371 5.371 17 C 0.301 3.699 18 O -0.427 6.427 19 C -0.202 4.202 20 C 0.006 3.994 21 N -0.167 5.167 22 C -0.071 4.071 23 C -0.232 4.232 24 C -0.115 4.115 25 C -0.091 4.091 26 C -0.168 4.168 27 C -0.120 4.120 28 C -0.148 4.148 29 C -0.009 4.009 30 C -0.187 4.187 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.238 0.762 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.136 0.864 48 H 0.095 0.905 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.389 -22.811 13.987 27.295 hybrid contribution -0.010 1.410 0.280 1.437 sum -5.399 -21.401 14.267 26.281 Atomic orbital electron populations 1.69667 1.05146 1.25725 1.57472 1.24774 0.95558 0.97839 1.02735 0.86094 0.78814 0.83917 0.77218 1.20481 1.21796 1.21822 1.19337 0.91166 0.83946 1.42940 0.90914 1.42174 1.05679 0.99444 1.87108 1.21089 0.95137 0.85597 0.92688 0.91924 1.23918 0.95617 0.99628 1.01811 1.22714 0.99623 0.92825 0.98710 0.88893 1.21512 0.98051 0.97175 0.82551 1.46089 1.63128 1.08047 1.19872 1.20311 0.78632 0.83495 0.87457 1.90718 1.51594 1.37469 1.62871 1.22053 1.03765 0.98680 0.95698 1.21463 1.00777 0.95497 0.81690 1.44058 1.03906 1.62047 1.06643 1.21864 0.97820 1.03372 0.84084 1.21681 0.90396 1.12567 0.98529 1.19247 0.93743 1.06330 0.92219 1.20272 0.90461 0.98916 0.99481 1.20637 0.98423 1.03998 0.93697 1.20821 0.96152 0.99941 0.95081 1.20071 0.90235 1.05728 0.98790 1.18288 0.83983 1.03954 0.94635 1.23441 1.00516 0.99718 0.95066 0.93456 0.78124 0.91511 0.91436 0.91497 0.91756 0.76151 0.88197 0.88104 0.88246 0.88754 0.81480 0.83646 0.86202 0.86153 0.85819 0.86374 0.90462 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -16.97 5.31 -52.55 -0.28 -17.25 16 10 C 0.17 3.15 4.57 -67.02 -0.31 2.85 16 11 H 0.06 1.20 8.10 -51.93 -0.42 0.77 16 12 C -0.17 -2.67 7.44 -25.82 -0.19 -2.86 16 13 C -0.12 -1.69 3.63 -89.81 -0.33 -2.02 16 14 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 15 C 0.13 1.61 5.50 -4.04 -0.02 1.59 16 16 N -0.72 -7.82 5.56 -60.29 -0.33 -8.16 16 17 C 0.52 5.69 7.83 -10.99 -0.09 5.60 16 18 O -0.55 -7.89 15.98 5.56 0.09 -7.81 16 19 C -0.16 -1.29 6.02 -27.89 -0.17 -1.46 16 20 C 0.13 1.06 5.29 -4.04 -0.02 1.04 16 21 N -0.48 -4.38 2.78 -114.42 -0.32 -4.70 16 22 C 0.05 0.43 11.27 -16.73 -0.19 0.24 16 23 C -0.21 -1.81 11.08 -37.67 -0.42 -2.23 16 24 C -0.11 -1.14 6.37 -105.14 -0.67 -1.81 16 25 C -0.07 -0.66 10.05 -39.64 -0.40 -1.06 16 26 C -0.15 -1.24 9.97 -39.94 -0.40 -1.64 16 27 C -0.10 -0.86 10.01 -39.54 -0.40 -1.26 16 28 C -0.13 -1.22 10.00 -39.44 -0.39 -1.61 16 29 C 0.10 1.01 6.81 -83.99 -0.57 0.44 16 30 C -0.15 -2.27 7.39 -25.92 -0.19 -2.46 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.38 9.79 7.90 -40.82 -0.32 9.47 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 35 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 3.80 8.47 -40.82 -0.35 3.46 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 42 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 44 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 48 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 49 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 410.14 15.07 6.18 6.18 Total: -1.00 -32.44 410.14 -11.74 -44.18 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -7.79 Total: 11.20 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -4.99 Total: -13.82 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.21 Total: -56.82 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.44 -11.74 -44.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263879120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.378 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds