Wall clock time and date at job start Wed Apr 1 2020 00:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48499 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46910 * 299.99612 * 3 2 1 6 6 H 1.48501 * 109.47135 * 59.99916 * 3 2 1 7 7 C 1.38812 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00043 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99869 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85233 * 336.19808 * 10 9 7 12 12 C 1.53959 * 113.61462 * 107.46697 * 10 9 7 13 13 C 1.53783 * 87.01805 * 89.19674 * 12 10 9 14 14 H 1.08994 * 113.61838 * 270.76842 * 13 12 10 15 15 C 1.53005 * 113.61107 * 139.95025 * 13 12 10 16 16 N 1.46505 * 109.46784 * 85.86505 * 15 13 12 17 17 C 1.34777 * 120.00115 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99620 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00369 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47466 * 180.02562 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36827 * 125.06207 * 265.02682 * 21 20 19 23 23 C 1.34242 * 109.92705 * 180.02562 * 22 21 20 24 24 C 1.46494 * 106.99773 * 359.97438 * 23 22 21 25 25 C 1.39625 * 134.02960 * 180.02562 * 24 23 22 26 26 C 1.36634 * 119.76146 * 179.21830 * 25 24 23 27 27 C 1.38840 * 120.52273 * 0.70157 * 26 25 24 28 28 C 1.37742 * 120.66757 * 359.52886 * 27 26 25 29 29 C 1.37692 * 125.05862 * 84.72230 * 21 20 19 30 30 C 1.53775 * 87.17246 * 25.36564 * 13 12 10 31 31 H 0.96998 * 119.99898 * 0.02562 * 1 2 3 32 32 H 0.96996 * 119.99966 * 359.97438 * 9 7 2 33 33 H 1.09001 * 113.66612 * 334.67125 * 12 10 9 34 34 H 1.09003 * 113.61350 * 203.71738 * 12 10 9 35 35 H 1.09002 * 109.47193 * 325.87063 * 15 13 12 36 36 H 1.08992 * 109.47333 * 205.86062 * 15 13 12 37 37 H 0.97003 * 120.00244 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.47120 * 59.99760 * 19 17 16 39 39 H 1.08998 * 109.46862 * 300.00562 * 19 17 16 40 40 H 1.09002 * 109.47153 * 59.99773 * 20 19 17 41 41 H 1.09001 * 109.46832 * 299.99964 * 20 19 17 42 42 H 1.07999 * 125.03816 * 0.03238 * 22 21 20 43 43 H 1.08003 * 126.50304 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.11785 * 359.97438 * 25 24 23 45 45 H 1.07995 * 119.74031 * 180.23141 * 26 25 24 46 46 H 1.07996 * 119.66419 * 179.55696 * 27 26 25 47 47 H 1.08003 * 120.11091 * 180.02562 * 28 27 26 48 48 H 1.09004 * 113.61767 * 89.15455 * 30 13 12 49 49 H 1.09002 * 113.61653 * 219.97559 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0657 -3.5638 -0.4048 12 6 1.9999 -4.4025 1.3462 13 6 0.7223 -5.0804 0.8235 14 1 -0.1893 -4.5272 1.0494 15 6 0.6227 -6.5633 1.1871 16 7 0.0258 -6.7008 2.5179 17 6 -0.1617 -7.9252 3.0492 18 8 0.1634 -8.9131 2.4253 19 6 -0.7763 -8.0667 4.4178 20 6 -0.8758 -9.5495 4.7815 21 7 -1.4727 -9.6870 6.1123 22 6 -0.7702 -9.8126 7.2797 23 6 -1.6183 -9.9185 8.3149 24 6 -2.9748 -9.8550 7.7655 25 6 -4.2524 -9.9086 8.3261 26 6 -5.3513 -9.8030 7.5211 27 6 -5.2080 -9.6572 6.1478 28 6 -3.9571 -9.6068 5.5734 29 6 -2.8242 -9.7031 6.3751 30 6 1.2603 -4.8288 -0.5949 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3880 0.0005 33 1 1.8287 -3.7490 2.2016 34 1 2.8293 -5.0930 1.4989 35 1 1.6194 -7.0047 1.1886 36 1 -0.0006 -7.0759 0.4546 37 1 -0.2346 -5.9106 3.0167 38 1 -1.7728 -7.6250 4.4161 39 1 -0.1531 -7.5542 5.1506 40 1 0.1209 -9.9908 4.7834 41 1 -1.4988 -10.0623 4.0487 42 1 0.3070 -9.8246 7.3570 43 1 -1.3512 -10.0295 9.3555 44 1 -4.3715 -10.0209 9.3937 45 1 -6.3393 -9.8407 7.9555 46 1 -6.0862 -9.5822 5.5237 47 1 -3.8560 -9.4928 4.5042 48 1 1.8872 -5.6360 -0.9737 49 1 0.4927 -4.5202 -1.3047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263879120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:51 Heat of formation + Delta-G solvation = 32.348104 kcal Electronic energy + Delta-G solvation = -27713.256945 eV Core-core repulsion = 23833.580414 eV Total energy + Delta-G solvation = -3879.676531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25458 -40.95062 -39.88807 -37.99092 -36.05743 -34.96845 -34.78449 -32.28972 -31.92208 -30.28775 -29.65762 -28.46427 -26.44674 -25.86900 -25.03513 -23.48538 -23.01211 -22.39127 -21.53225 -20.99006 -19.84603 -19.34392 -18.50926 -17.55888 -17.38968 -17.11537 -16.78631 -16.67820 -16.27527 -15.96981 -15.81713 -15.48810 -15.27056 -14.91054 -14.75282 -14.62855 -14.42700 -14.18591 -13.73046 -13.66603 -13.50617 -13.41798 -13.28113 -12.95757 -12.92478 -12.66370 -12.52512 -12.28595 -12.23092 -12.14014 -12.05374 -11.72147 -11.58305 -11.49253 -11.10474 -10.92457 -10.78060 -10.56795 -10.09484 -9.09998 -9.00832 -8.56341 -7.96780 -5.24870 0.23689 0.71475 1.47448 1.47788 1.54505 1.57775 1.69640 1.84355 2.31907 2.54710 3.01525 3.36149 3.60314 3.67910 3.71479 3.73673 3.78828 3.83636 3.95950 4.04395 4.14459 4.16740 4.29847 4.31854 4.35875 4.38892 4.40630 4.59765 4.67524 4.72331 4.76291 4.78521 4.83152 4.92193 4.97574 4.98726 5.08858 5.10940 5.19851 5.27204 5.34467 5.47362 5.53941 5.58896 5.65726 5.72836 5.87090 5.92055 6.27218 6.33220 6.39772 6.47711 7.14940 7.32250 8.09560 8.31472 9.26615 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.001710 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.702843 B =16365.680541 C =17157.867230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.142 3.858 11 H 0.059 0.941 12 C -0.152 4.152 13 C -0.102 4.102 14 H 0.080 0.920 15 C 0.140 3.860 16 N -0.718 5.718 17 C 0.519 3.481 18 O -0.582 6.582 19 C -0.148 4.148 20 C 0.132 3.868 21 N -0.486 5.486 22 C 0.052 3.948 23 C -0.222 4.222 24 C -0.136 4.136 25 C -0.085 4.085 26 C -0.154 4.154 27 C -0.108 4.108 28 C -0.143 4.143 29 C 0.074 3.926 30 C -0.135 4.135 31 H 0.251 0.749 32 H 0.374 0.626 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.412 0.588 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.197 0.803 43 H 0.162 0.838 44 H 0.135 0.865 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.123 0.877 48 H 0.105 0.895 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 -23.253 15.691 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.032 3.968 11 H 0.077 0.923 12 C -0.193 4.193 13 C -0.121 4.121 14 H 0.098 0.902 15 C 0.016 3.984 16 N -0.369 5.369 17 C 0.306 3.694 18 O -0.462 6.462 19 C -0.188 4.188 20 C 0.010 3.990 21 N -0.169 5.169 22 C -0.072 4.072 23 C -0.246 4.246 24 C -0.141 4.141 25 C -0.104 4.104 26 C -0.173 4.173 27 C -0.127 4.127 28 C -0.163 4.163 29 C -0.031 4.031 30 C -0.174 4.174 31 H 0.060 0.940 32 H 0.206 0.794 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.248 0.752 38 H 0.123 0.877 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.213 0.787 43 H 0.180 0.820 44 H 0.153 0.847 45 H 0.159 0.841 46 H 0.160 0.840 47 H 0.141 0.859 48 H 0.124 0.876 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.506 -23.781 14.915 28.430 hybrid contribution -0.252 1.612 -0.009 1.632 sum -4.758 -22.169 14.906 27.135 Atomic orbital electron populations 1.69812 1.06546 1.25987 1.59601 1.25549 0.96394 1.01052 1.03834 0.85090 0.78287 0.79915 0.76573 1.19032 1.22206 1.22121 1.19708 0.91541 0.85184 1.40843 0.90527 1.42303 1.05319 1.00569 1.87595 1.21442 0.95066 0.84926 0.95391 0.92250 1.23725 0.97314 0.99179 0.99033 1.22482 0.98287 0.93820 0.97503 0.90173 1.21301 0.98339 0.95382 0.83352 1.46046 1.62847 1.08564 1.19410 1.20707 0.77847 0.82780 0.88096 1.90708 1.53098 1.38483 1.63955 1.21961 1.04013 0.98800 0.94072 1.21413 1.00775 0.95529 0.81325 1.44134 1.03623 1.62062 1.07059 1.22375 0.99111 1.02265 0.83462 1.21985 0.89943 1.13023 0.99647 1.19656 0.94874 1.06902 0.92648 1.20572 0.90391 0.98893 1.00521 1.20954 0.99325 1.03305 0.93716 1.21136 0.96551 0.99385 0.95630 1.20278 0.90607 1.06278 0.99177 1.18561 0.84735 1.04780 0.95071 1.23345 0.99964 0.98656 0.95469 0.94039 0.79375 0.93327 0.88969 0.91215 0.91911 0.75206 0.87662 0.86455 0.87627 0.89734 0.78655 0.82049 0.84670 0.84066 0.83996 0.85885 0.87625 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 2 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.24 -13.04 9.97 84.03 0.84 -12.20 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -34.84 5.31 -320.16 -1.70 -36.54 16 10 C 0.14 5.22 4.57 45.58 0.21 5.43 16 11 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 12 C -0.15 -4.56 7.44 31.18 0.23 -4.32 16 13 C -0.10 -2.72 3.63 -10.27 -0.04 -2.76 16 14 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.14 3.18 5.50 86.38 0.47 3.65 16 16 N -0.72 -14.24 5.56 -463.05 -2.57 -16.81 16 17 C 0.52 10.58 7.83 87.66 0.69 11.27 16 18 O -0.58 -15.98 15.98 -3.04 -0.05 -16.03 16 19 C -0.15 -2.12 6.02 29.85 0.18 -1.94 16 20 C 0.13 2.02 5.29 86.38 0.46 2.48 16 21 N -0.49 -8.28 2.78 -515.93 -1.43 -9.71 16 22 C 0.05 0.76 11.27 83.00 0.94 1.69 16 23 C -0.22 -3.63 11.08 23.51 0.26 -3.37 16 24 C -0.14 -2.74 6.37 -20.20 -0.13 -2.87 16 25 C -0.09 -1.49 10.05 22.23 0.22 -1.27 16 26 C -0.15 -2.43 9.97 22.04 0.22 -2.21 16 27 C -0.11 -1.78 10.01 22.30 0.22 -1.55 16 28 C -0.14 -2.68 10.00 22.36 0.22 -2.46 16 29 C 0.07 1.51 6.81 39.03 0.27 1.78 16 30 C -0.14 -3.94 7.39 31.12 0.23 -3.71 16 31 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.37 19.43 7.90 -92.71 -0.73 18.70 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.34 7.92 -2.39 -0.02 2.32 16 35 H 0.07 1.60 7.87 -2.39 -0.02 1.58 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.41 6.99 8.47 -92.71 -0.79 6.21 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 1.49 8.07 -2.39 -0.02 1.47 16 41 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 42 H 0.20 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 45 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.12 2.04 8.06 -2.91 -0.02 2.01 16 48 H 0.11 2.51 8.10 -2.38 -0.02 2.49 16 49 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -70.24 410.14 1.95 -68.29 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.56 Total: 37.46 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 5.96 Total: -16.18 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -5.42 Total: -120.87 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.05 Total: -16.03 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -70.24 1.95 -68.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263879120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.641 kcal (2) G-P(sol) polarization free energy of solvation -70.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds