Wall clock time and date at job start Wed Apr 1 2020 00:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99494 * 2 1 4 4 H 1.48493 * 109.47105 * 269.99543 * 3 2 1 5 5 H 1.48504 * 109.47411 * 30.00141 * 3 2 1 6 6 H 1.48504 * 109.46677 * 149.99933 * 3 2 1 7 7 C 1.38816 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99566 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99890 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.67388 * 36.78453 * 10 9 7 12 12 C 1.54888 * 110.75691 * 273.54230 * 10 9 7 13 13 C 1.54261 * 104.20039 * 203.74252 * 12 10 9 14 14 C 1.53875 * 106.59623 * 23.61334 * 13 12 10 15 15 H 1.09001 * 110.03656 * 240.67113 * 14 13 12 16 16 C 1.53001 * 110.03333 * 119.28292 * 14 13 12 17 17 N 1.46500 * 109.46880 * 66.45813 * 16 14 13 18 18 C 1.34777 * 119.99946 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.99972 * 179.97438 * 18 17 16 21 21 C 1.50704 * 109.47135 * 179.97438 * 20 18 17 22 22 C 1.34239 * 126.49987 * 265.06765 * 21 20 18 23 23 N 1.36829 * 109.92651 * 180.31236 * 22 21 20 24 24 H 0.97003 * 125.06049 * 179.80124 * 23 22 21 25 25 C 1.37686 * 109.87706 * 359.75646 * 23 22 21 26 26 C 1.39125 * 133.51019 * 179.97438 * 25 23 22 27 27 C 1.37753 * 119.77629 * 180.02562 * 26 25 23 28 28 C 1.38830 * 120.67033 * 0.02562 * 27 26 25 29 29 C 1.36620 * 120.52587 * 359.97438 * 28 27 26 30 30 C 1.39635 * 119.76653 * 0.02562 * 29 28 27 31 31 C 1.54269 * 106.59901 * 359.97438 * 14 13 12 32 32 H 0.96997 * 120.00525 * 359.97438 * 1 2 3 33 33 H 0.97005 * 119.99774 * 359.97438 * 9 7 2 34 34 H 1.09007 * 110.48165 * 85.06378 * 12 10 9 35 35 H 1.09004 * 110.48642 * 322.42535 * 12 10 9 36 36 H 1.08994 * 110.03296 * 264.33263 * 13 12 10 37 37 H 1.09000 * 110.07511 * 142.91697 * 13 12 10 38 38 H 1.08995 * 109.46992 * 306.45471 * 16 14 13 39 39 H 1.09002 * 109.47131 * 186.45347 * 16 14 13 40 40 H 0.96998 * 119.99762 * 359.97438 * 17 16 14 41 41 H 1.08995 * 109.47561 * 59.99681 * 20 18 17 42 42 H 1.09002 * 109.46857 * 299.99376 * 20 18 17 43 43 H 1.07993 * 125.03391 * 0.07172 * 22 21 20 44 44 H 1.07993 * 120.11433 * 0.05172 * 26 25 23 45 45 H 1.08002 * 119.66659 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.73412 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.11676 * 179.97438 * 29 28 27 48 48 H 1.09007 * 110.48254 * 95.07206 * 31 14 13 49 49 H 1.08997 * 110.49029 * 217.70679 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9580 -3.5816 0.6112 12 6 2.4103 -4.0874 -1.4450 13 6 2.5900 -5.6166 -1.3512 14 6 1.7902 -6.0784 -0.1204 15 1 2.4565 -6.5482 0.6031 16 6 0.6987 -7.0634 -0.5440 17 7 1.3180 -8.2940 -1.0421 18 6 0.5453 -9.3102 -1.4742 19 8 -0.6628 -9.2060 -1.4501 20 6 1.1824 -10.5759 -1.9871 21 6 0.1073 -11.5461 -2.4042 22 6 -0.4125 -12.5320 -1.6560 23 7 -1.3612 -13.2101 -2.3719 24 1 -1.8730 -13.9656 -2.0430 25 6 -1.4818 -12.6597 -3.6282 26 6 -2.2773 -12.9546 -4.7308 27 6 -2.1635 -12.2003 -5.8778 28 6 -1.2615 -11.1471 -5.9462 29 6 -0.4706 -10.8401 -4.8754 30 6 -0.5694 -11.5916 -3.7026 31 6 1.1530 -4.8135 0.4911 32 1 -0.4851 0.8400 0.0004 33 1 0.3557 -2.3881 0.0005 34 1 3.3369 -3.6135 -1.7692 35 1 1.5957 -3.8400 -2.1258 36 1 3.6444 -5.8616 -1.2247 37 1 2.2010 -6.0949 -2.2501 38 1 0.0924 -6.6169 -1.3320 39 1 0.0667 -7.2959 0.3131 40 1 2.2842 -8.3771 -1.0617 41 1 1.7887 -11.0227 -1.1993 42 1 1.8144 -10.3429 -2.8441 43 1 -0.1219 -12.7590 -0.6410 44 1 -2.9820 -13.7718 -4.6875 45 1 -2.7822 -12.4305 -6.7326 46 1 -1.1851 -10.5654 -6.8530 47 1 0.2291 -10.0197 -4.9360 48 1 0.1352 -4.6831 0.1231 49 1 1.1616 -4.8701 1.5796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263927296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:04 Heat of formation + Delta-G solvation = 16.371323 kcal Electronic energy + Delta-G solvation = -28107.089359 eV Core-core repulsion = 24226.720023 eV Total energy + Delta-G solvation = -3880.369336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.51764 -39.65358 -38.06793 -37.09364 -34.84862 -33.40150 -33.21853 -30.90419 -30.36657 -29.50119 -29.00401 -27.69070 -26.76023 -24.14743 -23.06349 -23.02754 -21.98204 -20.99350 -19.90628 -19.46458 -19.20782 -18.06706 -17.18903 -16.93069 -16.64755 -16.07853 -15.65996 -15.58537 -14.95159 -14.89884 -14.60147 -14.26415 -13.99996 -13.86670 -13.54559 -13.46663 -13.16561 -12.91642 -12.77509 -12.71306 -12.24684 -12.04822 -11.87016 -11.82019 -11.60270 -11.10780 -11.03066 -10.83503 -10.77898 -10.55041 -10.51579 -10.24638 -10.13063 -10.03873 -9.83957 -9.66778 -9.58754 -9.02193 -8.84900 -8.40666 -7.87165 -6.91649 -5.74159 -3.02687 0.93392 1.45171 2.36233 2.67698 2.87395 3.30409 3.44867 3.49795 3.51628 3.76182 4.46844 4.53316 4.60744 4.65978 4.79591 4.87059 4.94424 4.96387 4.98423 5.06408 5.12798 5.25007 5.31460 5.45831 5.55676 5.58455 5.61094 5.67446 5.73616 5.78620 5.90662 5.92414 6.00091 6.06740 6.11565 6.26497 6.27328 6.36296 6.42133 6.44859 6.47739 6.51439 6.55176 6.59825 6.75716 6.89816 6.95611 7.14907 7.27291 7.51290 7.72715 8.26780 8.44792 9.55487 10.14843 10.48826 11.48526 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.001739 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.047580 B =16096.367227 C =16688.153389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.052 0.948 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.127 3.873 17 N -0.731 5.731 18 C 0.507 3.493 19 O -0.530 6.530 20 C -0.065 4.065 21 C -0.152 4.152 22 C 0.063 3.937 23 N -0.595 5.595 24 H 0.415 0.585 25 C 0.095 3.905 26 C -0.132 4.132 27 C -0.101 4.101 28 C -0.147 4.147 29 C -0.067 4.067 30 C -0.089 4.089 31 C -0.122 4.122 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.168 0.832 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.069 0.931 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 -31.622 -6.439 32.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.184 4.184 13 C -0.158 4.158 14 C -0.119 4.119 15 H 0.091 0.909 16 C 0.004 3.996 17 N -0.383 5.383 18 C 0.293 3.707 19 O -0.406 6.406 20 C -0.106 4.106 21 C -0.160 4.160 22 C -0.064 4.064 23 N -0.198 5.198 24 H 0.252 0.748 25 C -0.012 4.012 26 C -0.153 4.153 27 C -0.120 4.120 28 C -0.166 4.166 29 C -0.086 4.086 30 C -0.094 4.094 31 C -0.161 4.161 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.233 0.767 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.186 0.814 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.088 0.912 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.998 -31.472 -6.315 32.115 hybrid contribution 0.329 0.620 0.146 0.716 sum 1.327 -30.853 -6.169 31.491 Atomic orbital electron populations 1.69662 1.05091 1.25629 1.57746 1.24756 0.95520 0.97704 1.03127 0.86199 0.78626 0.83937 0.77485 1.21771 1.21812 1.20799 1.19245 0.90987 0.84177 1.42529 0.91211 1.42393 1.05761 0.99790 1.88194 1.21154 0.93857 0.85590 0.92778 0.92980 1.23069 1.01262 0.92762 1.01340 1.22203 0.98891 0.97868 0.96831 1.21951 0.96418 0.95695 0.97844 0.90890 1.21520 0.95524 0.83438 0.99119 1.46099 1.10126 1.16270 1.65843 1.20688 0.87636 0.84726 0.77654 1.90733 1.14349 1.81545 1.53944 1.19937 0.96416 0.91899 1.02305 1.19524 1.02974 0.99844 0.93621 1.21519 0.92549 0.95186 0.97102 1.41655 1.36009 1.30771 1.11317 0.74840 1.18231 0.99780 0.96383 0.86821 1.19998 1.01019 1.02405 0.91866 1.20791 0.98699 0.95558 0.96963 1.20632 0.98096 0.99001 0.98911 1.20268 0.98832 0.98042 0.91421 1.18985 0.98685 0.97253 0.94471 1.22566 1.00137 0.93550 0.99812 0.93525 0.78194 0.92642 0.91834 0.92475 0.92357 0.91316 0.91765 0.76746 0.88313 0.88250 0.81441 0.86447 0.85881 0.86067 0.86331 0.91222 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.63 9.98 -15.06 -0.15 -6.78 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -18.14 5.25 -51.52 -0.27 -18.41 16 10 C 0.18 3.45 3.54 -65.95 -0.23 3.22 16 11 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 12 C -0.14 -2.50 6.51 -25.08 -0.16 -2.66 16 13 C -0.12 -1.54 6.13 -25.62 -0.16 -1.70 16 14 C -0.10 -1.24 2.98 -89.50 -0.27 -1.50 16 15 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 16 C 0.13 1.59 4.71 -4.04 -0.02 1.57 16 17 N -0.73 -7.36 5.29 -60.30 -0.32 -7.68 16 18 C 0.51 5.91 7.82 -10.99 -0.09 5.83 16 19 O -0.53 -8.78 16.03 5.55 0.09 -8.69 16 20 C -0.07 -0.53 6.23 -29.04 -0.18 -0.71 16 21 C -0.15 -1.55 4.81 -102.71 -0.49 -2.04 16 22 C 0.06 0.52 11.73 -16.73 -0.20 0.33 16 23 N -0.59 -4.78 6.07 -10.65 -0.06 -4.85 16 24 H 0.42 1.97 8.96 -40.82 -0.37 1.61 16 25 C 0.09 0.99 7.28 -83.99 -0.61 0.38 16 26 C -0.13 -1.21 10.08 -39.43 -0.40 -1.60 16 27 C -0.10 -0.90 10.01 -39.54 -0.40 -1.29 16 28 C -0.15 -1.43 9.97 -39.95 -0.40 -1.83 16 29 C -0.07 -0.74 10.05 -39.64 -0.40 -1.14 16 30 C -0.09 -1.04 6.35 -105.14 -0.67 -1.71 16 31 C -0.12 -1.94 5.97 -25.08 -0.15 -2.09 16 32 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.38 10.31 7.72 -40.82 -0.32 10.00 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.72 7.58 -51.93 -0.39 0.33 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 2.86 8.31 -40.82 -0.34 2.52 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 48 H 0.07 1.19 7.73 -51.93 -0.40 0.79 16 49 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 404.35 15.07 6.09 6.09 Total: -1.00 -35.84 404.35 -11.53 -47.38 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -7.70 Total: 10.66 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -5.06 Total: -14.27 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.07 Total: -58.66 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.84 -11.53 -47.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263927296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.747 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds