Wall clock time and date at job start Wed Apr 1 2020 00:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99494 * 2 1 4 4 H 1.48493 * 109.47105 * 269.99543 * 3 2 1 5 5 H 1.48504 * 109.47411 * 30.00141 * 3 2 1 6 6 H 1.48504 * 109.46677 * 149.99933 * 3 2 1 7 7 C 1.38816 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99566 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99890 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.67388 * 36.78453 * 10 9 7 12 12 C 1.54888 * 110.75691 * 273.54230 * 10 9 7 13 13 C 1.54261 * 104.20039 * 203.74252 * 12 10 9 14 14 C 1.53875 * 106.59623 * 23.61334 * 13 12 10 15 15 H 1.09001 * 110.03656 * 240.67113 * 14 13 12 16 16 C 1.53001 * 110.03333 * 119.28292 * 14 13 12 17 17 N 1.46500 * 109.46880 * 66.45813 * 16 14 13 18 18 C 1.34777 * 119.99946 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.99972 * 179.97438 * 18 17 16 21 21 C 1.50704 * 109.47135 * 179.97438 * 20 18 17 22 22 C 1.34239 * 126.49987 * 265.06765 * 21 20 18 23 23 N 1.36829 * 109.92651 * 180.31236 * 22 21 20 24 24 H 0.97003 * 125.06049 * 179.80124 * 23 22 21 25 25 C 1.37686 * 109.87706 * 359.75646 * 23 22 21 26 26 C 1.39125 * 133.51019 * 179.97438 * 25 23 22 27 27 C 1.37753 * 119.77629 * 180.02562 * 26 25 23 28 28 C 1.38830 * 120.67033 * 0.02562 * 27 26 25 29 29 C 1.36620 * 120.52587 * 359.97438 * 28 27 26 30 30 C 1.39635 * 119.76653 * 0.02562 * 29 28 27 31 31 C 1.54269 * 106.59901 * 359.97438 * 14 13 12 32 32 H 0.96997 * 120.00525 * 359.97438 * 1 2 3 33 33 H 0.97005 * 119.99774 * 359.97438 * 9 7 2 34 34 H 1.09007 * 110.48165 * 85.06378 * 12 10 9 35 35 H 1.09004 * 110.48642 * 322.42535 * 12 10 9 36 36 H 1.08994 * 110.03296 * 264.33263 * 13 12 10 37 37 H 1.09000 * 110.07511 * 142.91697 * 13 12 10 38 38 H 1.08995 * 109.46992 * 306.45471 * 16 14 13 39 39 H 1.09002 * 109.47131 * 186.45347 * 16 14 13 40 40 H 0.96998 * 119.99762 * 359.97438 * 17 16 14 41 41 H 1.08995 * 109.47561 * 59.99681 * 20 18 17 42 42 H 1.09002 * 109.46857 * 299.99376 * 20 18 17 43 43 H 1.07993 * 125.03391 * 0.07172 * 22 21 20 44 44 H 1.07993 * 120.11433 * 0.05172 * 26 25 23 45 45 H 1.08002 * 119.66659 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.73412 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.11676 * 179.97438 * 29 28 27 48 48 H 1.09007 * 110.48254 * 95.07206 * 31 14 13 49 49 H 1.08997 * 110.49029 * 217.70679 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9580 -3.5816 0.6112 12 6 2.4103 -4.0874 -1.4450 13 6 2.5900 -5.6166 -1.3512 14 6 1.7902 -6.0784 -0.1204 15 1 2.4565 -6.5482 0.6031 16 6 0.6987 -7.0634 -0.5440 17 7 1.3180 -8.2940 -1.0421 18 6 0.5453 -9.3102 -1.4742 19 8 -0.6628 -9.2060 -1.4501 20 6 1.1824 -10.5759 -1.9871 21 6 0.1073 -11.5461 -2.4042 22 6 -0.4125 -12.5320 -1.6560 23 7 -1.3612 -13.2101 -2.3719 24 1 -1.8730 -13.9656 -2.0430 25 6 -1.4818 -12.6597 -3.6282 26 6 -2.2773 -12.9546 -4.7308 27 6 -2.1635 -12.2003 -5.8778 28 6 -1.2615 -11.1471 -5.9462 29 6 -0.4706 -10.8401 -4.8754 30 6 -0.5694 -11.5916 -3.7026 31 6 1.1530 -4.8135 0.4911 32 1 -0.4851 0.8400 0.0004 33 1 0.3557 -2.3881 0.0005 34 1 3.3369 -3.6135 -1.7692 35 1 1.5957 -3.8400 -2.1258 36 1 3.6444 -5.8616 -1.2247 37 1 2.2010 -6.0949 -2.2501 38 1 0.0924 -6.6169 -1.3320 39 1 0.0667 -7.2959 0.3131 40 1 2.2842 -8.3771 -1.0617 41 1 1.7887 -11.0227 -1.1993 42 1 1.8144 -10.3429 -2.8441 43 1 -0.1219 -12.7590 -0.6410 44 1 -2.9820 -13.7718 -4.6875 45 1 -2.7822 -12.4305 -6.7326 46 1 -1.1851 -10.5654 -6.8530 47 1 0.2291 -10.0197 -4.9360 48 1 0.1352 -4.6831 0.1231 49 1 1.1616 -4.8701 1.5796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263927296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:03 Heat of formation + Delta-G solvation = -6.861534 kcal Electronic energy + Delta-G solvation = -28108.096811 eV Core-core repulsion = 24226.720023 eV Total energy + Delta-G solvation = -3881.376788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16764 -40.62621 -39.34109 -37.75490 -36.27187 -34.90567 -34.00098 -32.56971 -31.27130 -30.28578 -30.08531 -28.91861 -27.83218 -25.63198 -24.67581 -23.72965 -22.65907 -21.94988 -21.15242 -20.66331 -20.11701 -19.12992 -18.72740 -17.88729 -17.33890 -17.11928 -16.74246 -16.51694 -16.32090 -15.98771 -15.61928 -15.30991 -15.16163 -14.96700 -14.68612 -14.41847 -14.32894 -14.15952 -13.67512 -13.64446 -13.41465 -13.28987 -12.94534 -12.85547 -12.68526 -12.54669 -12.32476 -12.25134 -12.12511 -11.94520 -11.75366 -11.68881 -11.61853 -11.50124 -11.22460 -10.89885 -10.88581 -10.42836 -9.98043 -9.10069 -8.97337 -8.53047 -7.93322 -5.21577 0.24715 0.73332 1.46789 1.48851 1.57150 1.68174 1.80947 2.30485 2.47219 2.57872 3.03276 3.38914 3.70912 3.79271 3.82753 3.82938 3.93030 4.04016 4.21779 4.26665 4.32366 4.41374 4.43259 4.46954 4.53568 4.64266 4.64652 4.68548 4.73250 4.80979 4.82670 4.84312 4.93601 4.99093 5.05252 5.10751 5.16360 5.23175 5.25849 5.42268 5.50280 5.53356 5.59225 5.61909 5.65903 5.72580 5.80295 5.86826 6.28163 6.29441 6.72804 6.76862 7.34269 7.44164 8.13387 8.34747 9.30510 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.001739 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.047580 B =16096.367227 C =16688.153389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.164 3.836 11 H 0.055 0.945 12 C -0.140 4.140 13 C -0.107 4.107 14 C -0.082 4.082 15 H 0.106 0.894 16 C 0.135 3.865 17 N -0.716 5.716 18 C 0.506 3.494 19 O -0.586 6.586 20 C -0.055 4.055 21 C -0.185 4.185 22 C 0.069 3.931 23 N -0.588 5.588 24 H 0.429 0.571 25 C 0.071 3.929 26 C -0.137 4.137 27 C -0.111 4.111 28 C -0.157 4.157 29 C -0.093 4.093 30 C -0.119 4.119 31 C -0.117 4.117 32 H 0.250 0.750 33 H 0.370 0.630 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.418 0.582 41 H 0.136 0.864 42 H 0.115 0.885 43 H 0.202 0.798 44 H 0.140 0.860 45 H 0.147 0.853 46 H 0.135 0.865 47 H 0.118 0.882 48 H 0.050 0.950 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -33.997 -5.985 34.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.055 3.945 11 H 0.073 0.927 12 C -0.180 4.180 13 C -0.145 4.145 14 C -0.101 4.101 15 H 0.124 0.876 16 C 0.011 3.989 17 N -0.369 5.369 18 C 0.294 3.706 19 O -0.465 6.465 20 C -0.095 4.095 21 C -0.192 4.192 22 C -0.058 4.058 23 N -0.191 5.191 24 H 0.268 0.732 25 C -0.036 4.036 26 C -0.157 4.157 27 C -0.130 4.130 28 C -0.176 4.176 29 C -0.112 4.112 30 C -0.124 4.124 31 C -0.156 4.156 32 H 0.058 0.942 33 H 0.202 0.798 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.255 0.745 41 H 0.154 0.846 42 H 0.133 0.867 43 H 0.219 0.781 44 H 0.158 0.842 45 H 0.165 0.835 46 H 0.153 0.847 47 H 0.136 0.864 48 H 0.069 0.931 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.289 -33.911 -5.861 34.571 hybrid contribution -0.374 1.282 -0.001 1.336 sum 2.916 -32.629 -5.862 33.279 Atomic orbital electron populations 1.69831 1.06696 1.25928 1.59939 1.25601 0.96393 1.01233 1.04164 0.85134 0.77769 0.79520 0.77334 1.21613 1.22383 1.19155 1.19658 0.91477 0.85291 1.40408 0.90476 1.42638 1.05356 1.01240 1.88393 1.21476 0.94147 0.84511 0.94341 0.92723 1.22906 0.99846 0.96392 0.98884 1.22133 1.00992 0.93969 0.97359 1.21820 0.96294 0.93894 0.98082 0.87576 1.21237 0.95331 0.84377 0.97956 1.45916 1.11039 1.14992 1.64955 1.21389 0.87004 0.85714 0.76501 1.90713 1.16929 1.82625 1.56279 1.19979 0.96045 0.89622 1.03837 1.19878 1.04454 1.01328 0.93531 1.22109 0.91428 0.94202 0.98055 1.41714 1.35895 1.30952 1.10563 0.73150 1.18536 1.00211 0.96808 0.88031 1.20352 1.00968 1.02857 0.91540 1.21134 0.98782 0.95235 0.97871 1.20921 0.98031 0.99461 0.99169 1.20454 0.99853 0.98699 0.92198 1.19409 0.99656 0.97951 0.95382 1.22479 0.98687 0.94038 1.00384 0.94171 0.79821 0.93069 0.94624 0.89258 0.91576 0.94104 0.92587 0.74517 0.84568 0.86739 0.78135 0.84174 0.83512 0.84719 0.86409 0.93133 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.08 13.06 21.65 0.28 -60.79 16 2 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 3 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.24 -13.29 9.98 84.03 0.84 -12.45 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -37.92 5.25 -316.90 -1.66 -39.59 16 10 C 0.16 6.34 3.54 46.27 0.16 6.50 16 11 H 0.05 2.10 8.12 -2.39 -0.02 2.08 16 12 C -0.14 -4.78 6.51 31.67 0.21 -4.57 16 13 C -0.11 -2.45 6.13 31.32 0.19 -2.25 16 14 C -0.08 -1.82 2.98 -10.07 -0.03 -1.85 16 15 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 16 C 0.14 3.22 4.71 86.38 0.41 3.63 16 17 N -0.72 -12.69 5.29 -463.06 -2.45 -15.14 16 18 C 0.51 11.07 7.82 87.65 0.69 11.75 16 19 O -0.59 -19.52 16.03 -3.04 -0.05 -19.57 16 20 C -0.05 -0.75 6.23 29.10 0.18 -0.57 16 21 C -0.18 -3.52 4.81 -18.63 -0.09 -3.61 16 22 C 0.07 1.01 11.73 83.00 0.97 1.99 16 23 N -0.59 -8.61 6.07 -187.62 -1.14 -9.75 16 24 H 0.43 3.34 8.96 -92.71 -0.83 2.51 16 25 C 0.07 1.45 7.28 39.03 0.28 1.74 16 26 C -0.14 -2.39 10.08 22.37 0.23 -2.16 16 27 C -0.11 -1.91 10.01 22.30 0.22 -1.69 16 28 C -0.16 -3.08 9.97 22.03 0.22 -2.86 16 29 C -0.09 -2.12 10.05 22.23 0.22 -1.90 16 30 C -0.12 -2.77 6.35 -20.20 -0.13 -2.90 16 31 C -0.12 -3.67 5.97 31.66 0.19 -3.48 16 32 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.37 20.73 7.72 -92.70 -0.72 20.01 16 34 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.46 7.58 -2.39 -0.02 1.45 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.42 4.28 8.31 -92.71 -0.77 3.51 16 41 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.20 1.37 8.06 -2.91 -0.02 1.34 16 44 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 46 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 47 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 48 H 0.05 1.78 7.73 -2.38 -0.02 1.76 16 49 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -81.81 404.35 0.90 -80.91 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -1.34 Total: 34.12 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 5.23 Total: -19.04 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -4.97 Total: -125.27 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -81.81 0.90 -80.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263927296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.047 kcal (2) G-P(sol) polarization free energy of solvation -81.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds