Wall clock time and date at job start Wed Apr 1 2020 00:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99956 * 2 1 4 4 H 1.48506 * 109.47213 * 240.00221 * 3 2 1 5 5 H 1.48498 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47446 * 119.99986 * 3 2 1 7 7 C 1.38812 * 120.00589 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00280 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99563 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64658 * 14.77324 * 9 7 2 11 11 C 1.54919 * 104.82999 * 155.90614 * 10 9 7 12 12 C 1.55398 * 101.66465 * 36.92380 * 11 10 9 13 13 C 1.47024 * 125.64556 * 194.81347 * 9 7 2 14 14 H 1.09000 * 109.88230 * 300.59683 * 13 9 7 15 15 C 1.52998 * 109.88308 * 61.60633 * 13 9 7 16 16 N 1.46497 * 109.46907 * 184.49554 * 15 13 9 17 17 C 1.34783 * 119.99970 * 185.11747 * 16 15 13 18 18 O 1.21282 * 119.99683 * 359.97438 * 17 16 15 19 19 C 1.50692 * 119.99909 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.47059 * 179.97438 * 19 17 16 21 21 C 1.50704 * 109.47256 * 179.97438 * 20 19 17 22 22 C 1.34235 * 126.50052 * 264.69024 * 21 20 19 23 23 N 1.36837 * 109.92732 * 179.83358 * 22 21 20 24 24 H 0.97000 * 125.05959 * 180.18242 * 23 22 21 25 25 C 1.37686 * 109.87244 * 0.44443 * 23 22 21 26 26 C 1.39123 * 133.50809 * 179.71720 * 25 23 22 27 27 C 1.37752 * 119.77910 * 180.02562 * 26 25 23 28 28 C 1.38829 * 120.66869 * 0.02562 * 27 26 25 29 29 C 1.36627 * 120.52544 * 0.02562 * 28 27 26 30 30 C 1.39630 * 119.76490 * 359.97438 * 29 28 27 31 31 H 0.97000 * 120.00261 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.36997 * 274.74206 * 10 9 7 33 33 H 1.08997 * 110.37121 * 36.96008 * 10 9 7 34 34 H 1.09002 * 110.99943 * 155.08166 * 11 10 9 35 35 H 1.08996 * 111.00002 * 278.89486 * 11 10 9 36 36 H 1.09002 * 110.85184 * 206.30078 * 12 11 10 37 37 H 1.09001 * 110.69748 * 82.95018 * 12 11 10 38 38 H 1.09002 * 109.46936 * 64.49929 * 15 13 9 39 39 H 1.08994 * 109.46938 * 304.49925 * 15 13 9 40 40 H 0.97003 * 120.00427 * 5.11978 * 16 15 13 41 41 H 1.08996 * 109.47728 * 59.99838 * 19 17 16 42 42 H 1.09005 * 109.47312 * 299.99435 * 19 17 16 43 43 H 1.09003 * 109.47446 * 59.99748 * 20 19 17 44 44 H 1.08996 * 109.47056 * 299.99423 * 20 19 17 45 45 H 1.08003 * 125.03599 * 359.97151 * 22 21 20 46 46 H 1.07998 * 120.10992 * 0.04678 * 26 25 23 47 47 H 1.08006 * 119.66039 * 180.02562 * 27 26 25 48 48 H 1.07996 * 119.73513 * 179.97438 * 28 27 26 49 49 H 1.07995 * 120.11875 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1072 -2.5532 -0.3032 11 6 -0.2460 -4.0231 -0.7723 12 6 0.7668 -4.7467 0.1579 13 6 1.8977 -3.7074 0.3077 14 1 2.7036 -3.9331 -0.3907 15 6 2.4322 -3.7229 1.7412 16 7 3.0951 -5.0031 2.0014 17 6 3.5547 -5.2853 3.2366 18 8 3.4198 -4.4791 4.1326 19 6 4.2371 -6.6020 3.5040 20 6 4.6594 -6.6684 4.9731 21 6 5.3412 -7.9855 5.2408 22 6 4.7683 -9.0962 5.7305 23 7 5.6988 -10.0941 5.8341 24 1 5.5210 -10.9902 6.1603 25 6 6.9264 -9.6351 5.4119 26 6 8.1858 -10.2183 5.3160 27 6 9.2475 -9.4796 4.8421 28 6 9.0747 -8.1565 4.4588 29 6 7.8468 -7.5636 4.5458 30 6 6.7567 -8.2938 5.0233 31 1 -0.4850 0.8400 -0.0004 32 1 -0.7074 -2.3819 0.5904 33 1 -0.4073 -1.8698 -1.0976 34 1 -1.2590 -4.3911 -0.6094 35 1 0.0422 -4.1282 -1.8182 36 1 1.1400 -5.6581 -0.3092 37 1 0.3135 -4.9654 1.1248 38 1 1.6048 -3.5938 2.4389 39 1 3.1472 -2.9105 1.8711 40 1 3.2034 -5.6478 1.2847 41 1 5.1183 -6.6903 2.8687 42 1 3.5488 -7.4188 3.2862 43 1 3.7784 -6.5800 5.6089 44 1 5.3477 -5.8518 5.1905 45 1 3.7267 -9.1892 6.0005 46 1 8.3305 -11.2469 5.6117 47 1 10.2243 -9.9345 4.7680 48 1 9.9176 -7.5912 4.0898 49 1 7.7197 -6.5341 4.2455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266491727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:52 Heat of formation + Delta-G solvation = 32.136776 kcal Electronic energy + Delta-G solvation = -28362.542947 eV Core-core repulsion = 24482.857253 eV Total energy + Delta-G solvation = -3879.685695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50316 -39.40589 -37.60598 -37.14875 -34.37472 -34.03029 -32.45715 -31.28414 -29.75891 -29.53932 -29.05280 -28.22258 -25.20691 -24.43494 -23.16573 -23.03087 -21.99706 -20.39385 -19.99243 -19.53848 -19.32523 -18.04392 -17.04009 -16.64116 -16.32723 -15.78173 -15.68583 -15.40549 -14.85037 -14.63945 -14.39834 -14.18381 -14.04513 -13.89564 -13.64591 -13.31823 -13.00012 -12.55011 -12.46987 -12.14079 -12.05111 -11.88497 -11.86622 -11.85126 -11.64211 -11.28877 -11.15757 -10.92890 -10.82024 -10.75819 -10.21703 -10.11464 -9.93779 -9.85520 -9.81288 -9.71036 -9.43956 -8.61662 -8.52404 -8.45666 -7.86688 -6.82050 -5.75317 -3.11885 0.89619 1.40338 2.42231 2.86184 2.98071 3.41658 3.46774 3.47554 3.58478 3.71524 4.48323 4.50315 4.56670 4.74686 4.87364 4.97083 5.03382 5.10965 5.25115 5.28103 5.35877 5.39701 5.42820 5.51427 5.57188 5.64002 5.66160 5.70231 5.76774 5.82958 6.05685 6.09723 6.13889 6.16473 6.26069 6.28138 6.39869 6.47625 6.49569 6.57299 6.58091 6.65231 6.76693 6.86028 6.93515 7.09975 7.25914 7.52514 7.62271 7.80145 7.88419 8.27319 8.59426 9.18975 9.79610 10.47145 11.36717 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.001993 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.489539 B =14044.587284 C =14894.658086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.036 0.964 15 C 0.109 3.891 16 N -0.725 5.725 17 C 0.504 3.496 18 O -0.545 6.545 19 C -0.133 4.133 20 C -0.029 4.029 21 C -0.163 4.163 22 C 0.050 3.950 23 N -0.597 5.597 24 H 0.414 0.586 25 C 0.094 3.906 26 C -0.134 4.134 27 C -0.100 4.100 28 C -0.149 4.149 29 C -0.067 4.067 30 C -0.102 4.102 31 H 0.254 0.746 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.395 0.605 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.170 0.830 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.801 -24.204 8.454 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.362 4.362 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.163 4.163 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.016 4.016 16 N -0.377 5.377 17 C 0.290 3.710 18 O -0.423 6.423 19 C -0.173 4.173 20 C -0.067 4.067 21 C -0.170 4.170 22 C -0.076 4.076 23 N -0.200 5.200 24 H 0.251 0.749 25 C -0.013 4.013 26 C -0.155 4.155 27 C -0.119 4.119 28 C -0.168 4.168 29 C -0.086 4.086 30 C -0.106 4.106 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.228 0.772 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.187 0.813 46 H 0.135 0.865 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.547 -23.441 9.121 27.677 hybrid contribution 0.397 0.079 -0.102 0.417 sum 11.943 -23.362 9.019 27.745 Atomic orbital electron populations 1.69923 1.05020 1.25423 1.55817 1.24919 0.95685 0.97875 1.01391 0.86227 0.78600 0.83075 0.78038 1.21077 1.21569 1.20924 1.18933 0.90358 0.82190 1.44743 0.90721 1.44474 1.06428 1.01063 1.79365 1.21449 0.84848 0.90108 0.98839 1.23050 0.97526 0.99634 0.98540 1.22640 0.97110 0.96930 0.99658 1.21127 0.94492 0.88037 0.92024 0.94601 1.22198 0.96827 0.83524 0.99084 1.46183 1.59775 1.20736 1.10960 1.20701 0.78862 0.88776 0.82657 1.90708 1.57314 1.50026 1.44230 1.21654 1.01364 0.95517 0.98788 1.19624 1.00016 0.92596 0.94468 1.20331 0.91950 0.96262 1.08481 1.21667 0.94745 0.87657 1.03506 1.41722 1.06799 1.13509 1.57968 0.74911 1.18271 0.86974 0.94272 1.01768 1.20002 0.90001 0.99907 1.05561 1.20804 0.97881 0.94355 0.98873 1.20651 0.97297 0.95411 1.03473 1.20358 0.91294 0.99457 0.97478 1.19132 0.93769 0.93188 1.04545 0.93555 0.95630 0.90993 0.92383 0.92344 0.92410 0.91869 0.91778 0.91606 0.77215 0.89172 0.89271 0.90459 0.90396 0.81256 0.86497 0.85921 0.86055 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.58 55.49 0.59 -26.19 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.44 9.72 -15.06 -0.15 -6.59 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.59 -14.67 3.13 -162.57 -0.51 -15.18 16 10 C 0.17 4.12 5.42 -2.53 -0.01 4.11 16 11 C -0.15 -2.72 7.09 -24.45 -0.17 -2.90 16 12 C -0.13 -2.08 6.22 -24.76 -0.15 -2.23 16 13 C 0.15 2.99 3.19 -66.95 -0.21 2.78 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.12 5.10 -4.04 -0.02 2.10 16 16 N -0.73 -10.78 5.36 -60.30 -0.32 -11.10 16 17 C 0.50 7.65 7.83 -10.99 -0.09 7.56 16 18 O -0.55 -10.75 15.98 5.56 0.09 -10.66 16 19 C -0.13 -1.42 5.68 -27.89 -0.16 -1.57 16 20 C -0.03 -0.32 5.03 -27.88 -0.14 -0.46 16 21 C -0.16 -1.65 5.57 -102.71 -0.57 -2.23 16 22 C 0.05 0.40 11.73 -16.73 -0.20 0.20 16 23 N -0.60 -4.38 6.07 -10.65 -0.06 -4.45 16 24 H 0.41 1.73 8.96 -40.82 -0.37 1.37 16 25 C 0.09 0.90 7.28 -83.99 -0.61 0.29 16 26 C -0.13 -1.11 10.08 -39.43 -0.40 -1.51 16 27 C -0.10 -0.81 10.01 -39.54 -0.40 -1.20 16 28 C -0.15 -1.33 9.97 -39.94 -0.40 -1.72 16 29 C -0.07 -0.69 10.05 -39.64 -0.40 -1.09 16 30 C -0.10 -1.10 6.35 -105.14 -0.67 -1.77 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 33 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.04 7.78 -51.93 -0.40 0.64 16 38 H 0.06 1.40 8.03 -51.93 -0.42 0.98 16 39 H 0.07 1.47 7.86 -51.93 -0.41 1.06 16 40 H 0.39 4.61 8.40 -40.82 -0.34 4.27 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 44 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 45 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 48 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -34.14 401.27 -11.79 -45.93 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.75 Total: 4.76 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -4.84 Total: -6.38 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.31 Total: -56.91 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.14 -11.79 -45.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266491727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.067 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds