Wall clock time and date at job start Wed Apr 1 2020 00:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99828 * 2 1 4 4 H 1.48498 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46911 * 299.99854 * 3 2 1 6 6 H 1.48497 * 109.47633 * 59.99325 * 3 2 1 7 7 C 1.38810 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00051 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46940 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.91792 * 51.09955 * 11 10 9 13 13 C 1.55163 * 111.00254 * 174.99999 * 11 10 9 14 14 C 1.54320 * 103.10078 * 153.66292 * 13 11 10 15 15 N 1.47022 * 107.27575 * 337.71880 * 14 13 11 16 16 C 1.34772 * 125.64911 * 178.97451 * 15 14 13 17 17 O 1.21556 * 119.99469 * 174.78757 * 16 15 14 18 18 C 1.47855 * 120.00147 * 354.79000 * 16 15 14 19 19 C 1.39623 * 120.10763 * 187.86951 * 18 16 15 20 20 C 1.37987 * 120.00324 * 179.97438 * 19 18 16 21 21 C 1.38253 * 120.22767 * 0.02562 * 20 19 18 22 22 C 1.38977 * 120.21787 * 359.97438 * 21 20 19 23 23 N 1.39718 * 120.00076 * 180.02562 * 22 21 20 24 24 C 1.48227 * 110.99875 * 299.84578 * 23 22 21 25 25 C 1.51112 * 105.36013 * 144.90103 * 24 23 22 26 26 C 1.30963 * 109.45591 * 343.02275 * 25 24 23 27 27 C 1.48224 * 111.00113 * 53.48303 * 23 22 21 28 28 C 1.38678 * 119.99315 * 359.79170 * 22 21 20 29 29 C 1.47429 * 108.69965 * 358.94061 * 15 14 13 30 30 H 0.97000 * 120.00044 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00200 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46741 * 59.99854 * 10 9 7 33 33 H 1.08999 * 109.47163 * 299.99471 * 10 9 7 34 34 H 1.09001 * 110.71976 * 35.21124 * 13 11 10 35 35 H 1.08994 * 110.71663 * 272.11699 * 13 11 10 36 36 H 1.09001 * 109.88278 * 97.13463 * 14 13 11 37 37 H 1.08997 * 109.88484 * 218.30039 * 14 13 11 38 38 H 1.07997 * 119.99788 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.88888 * 179.97438 * 20 19 18 40 40 H 1.07998 * 119.88932 * 180.02562 * 21 20 19 41 41 H 1.09005 * 110.26860 * 263.87643 * 24 23 22 42 42 H 1.09004 * 110.26731 * 25.92865 * 24 23 22 43 43 H 1.08001 * 125.27108 * 163.00097 * 25 24 23 44 44 H 1.08000 * 125.26732 * 179.97438 * 26 25 24 45 45 H 1.09000 * 110.26488 * 334.07643 * 27 23 22 46 46 H 1.09005 * 110.26554 * 96.03550 * 27 23 22 47 47 H 1.08012 * 120.11434 * 180.25506 * 28 22 21 48 48 H 1.08997 * 110.36586 * 142.96681 * 29 15 14 49 49 H 1.08997 * 110.36656 * 265.17620 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 1 0.3255 -4.7005 -0.7907 13 6 1.7995 -6.1802 -0.1230 14 6 0.8265 -7.1675 0.5552 15 7 -0.0329 -6.3847 1.4553 16 6 -1.0288 -6.8787 2.2171 17 8 -1.6145 -6.1533 2.9970 18 6 -1.4090 -8.3031 2.1042 19 6 -2.5417 -8.7803 2.7665 20 6 -2.8948 -10.1099 2.6593 21 6 -2.1300 -10.9739 1.8977 22 6 -1.0006 -10.5089 1.2346 23 7 -0.2313 -11.3859 0.4658 24 6 0.3042 -12.4906 1.2965 25 6 0.3029 -13.7048 0.3969 26 6 -0.4744 -13.4834 -0.6335 27 6 -1.0707 -12.0991 -0.5261 28 6 -0.6401 -9.1734 1.3322 29 6 0.3759 -4.9698 1.3871 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6843 -3.7140 0.8922 33 1 2.6856 -3.7149 -0.8878 34 1 2.7524 -6.1534 0.4056 35 1 1.9483 -6.4433 -1.1702 36 1 0.2172 -7.6648 -0.1995 37 1 1.3872 -7.9063 1.1277 38 1 -3.1416 -8.1087 3.3627 39 1 -3.7712 -10.4771 3.1726 40 1 -2.4116 -12.0134 1.8172 41 1 1.3195 -12.2616 1.6203 42 1 -0.3391 -12.6598 2.1600 43 1 0.8575 -14.6141 0.5758 44 1 -0.6602 -14.1819 -1.4360 45 1 -2.1012 -12.1579 -0.1758 46 1 -1.0286 -11.5924 -1.4903 47 1 0.2349 -8.8090 0.8143 48 1 -0.4966 -4.3195 1.4492 49 1 1.0780 -4.7388 2.1882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267062373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:17 Heat of formation + Delta-G solvation = 75.862307 kcal Electronic energy + Delta-G solvation = -28953.608483 eV Core-core repulsion = 25075.818870 eV Total energy + Delta-G solvation = -3877.789613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.13290 -40.09198 -38.21997 -37.36181 -34.75851 -33.23777 -32.64909 -31.32774 -30.40711 -29.02169 -28.87998 -28.58110 -25.85089 -24.47951 -23.61283 -22.78933 -21.87808 -21.61093 -20.04962 -19.85996 -19.63051 -17.76789 -17.07725 -16.94760 -16.47539 -16.24703 -15.90997 -15.39812 -14.78533 -14.73921 -14.39598 -14.15503 -14.00082 -13.75414 -13.43848 -13.35593 -13.29039 -13.16369 -12.80934 -12.73046 -12.63896 -12.43641 -12.16994 -11.98414 -11.86622 -11.77515 -11.45352 -11.05178 -10.85906 -10.58928 -10.54455 -10.41223 -10.15212 -9.96912 -9.86068 -9.66358 -9.28485 -9.05696 -8.86579 -8.83014 -8.55937 -6.90789 -5.73913 -3.03252 0.56330 0.98275 1.65889 2.70523 2.96547 3.38010 3.45591 3.50807 3.53418 3.58258 4.17215 4.30748 4.34295 4.49029 4.56679 4.62528 4.71090 4.85253 4.89150 4.95819 4.98707 5.00545 5.04021 5.11526 5.15501 5.22652 5.28843 5.38111 5.41835 5.56705 5.61070 5.62432 5.85946 5.89577 5.95084 5.96357 5.99110 6.00384 6.04081 6.05892 6.12873 6.26125 6.31750 6.33115 6.39435 6.45785 6.70647 6.83578 6.91647 7.53942 7.72416 8.17160 8.44292 9.55618 10.12667 10.46925 11.48840 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.002114 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.642903 B =13238.993136 C =14218.946631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.128 4.128 14 C 0.091 3.909 15 N -0.611 5.611 16 C 0.569 3.431 17 O -0.534 6.534 18 C -0.118 4.118 19 C -0.061 4.061 20 C -0.119 4.119 21 C -0.130 4.130 22 C 0.064 3.936 23 N -0.466 5.466 24 C 0.054 3.946 25 C -0.168 4.168 26 C -0.167 4.167 27 C 0.052 3.948 28 C -0.096 4.096 29 C 0.116 3.884 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.171 0.829 48 H 0.084 0.916 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -32.105 0.702 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.124 4.124 12 H 0.105 0.895 13 C -0.166 4.166 14 C -0.032 4.032 15 N -0.344 5.344 16 C 0.358 3.642 17 O -0.412 6.412 18 C -0.122 4.122 19 C -0.080 4.080 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.030 4.030 23 N -0.187 5.187 24 C -0.072 4.072 25 C -0.186 4.186 26 C -0.186 4.186 27 C -0.074 4.074 28 C -0.115 4.115 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.187 0.813 48 H 0.102 0.898 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.688 -31.265 0.918 31.324 hybrid contribution -0.570 0.293 0.342 0.727 sum -2.259 -30.972 1.260 31.080 Atomic orbital electron populations 1.69673 1.05106 1.25569 1.57662 1.24762 0.95531 0.97748 1.03001 0.86116 0.78749 0.84140 0.77163 1.20558 1.21900 1.21879 1.19253 0.91046 0.84110 1.42711 0.91090 1.42381 1.05914 0.99955 1.89517 1.20584 0.92710 0.84755 0.98240 1.22679 0.98484 0.94736 0.96519 0.89550 1.22728 0.98288 0.94261 1.01357 1.22551 0.92762 0.94836 0.93012 1.48436 1.32802 1.10277 1.42852 1.17879 0.79134 0.86943 0.80231 1.90805 1.53507 1.59987 1.36858 1.19911 0.97805 0.93463 1.01028 1.21355 0.94861 0.95535 0.96277 1.20995 1.00118 0.93132 0.99477 1.21807 0.95726 1.00037 0.97467 1.18908 0.93583 0.93311 0.97218 1.63259 1.29836 1.13528 1.12115 1.22223 1.01789 0.87980 0.95183 1.23580 0.99853 0.98870 0.96333 1.23580 0.98582 0.97238 0.99156 1.22250 0.95699 0.91866 0.97573 1.22635 1.00754 0.91612 0.96457 1.22468 1.00282 0.80206 0.97612 0.93532 0.78209 0.95977 0.95704 0.90138 0.89732 0.90359 0.90507 0.84425 0.85238 0.85967 0.89034 0.91859 0.84430 0.84420 0.91743 0.88980 0.81279 0.89763 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.49 5.56 -59.91 -0.33 -18.82 16 10 C 0.17 3.19 5.73 -4.04 -0.02 3.17 16 11 C -0.10 -1.62 3.07 -88.21 -0.27 -1.89 16 12 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 13 C -0.13 -1.44 6.41 -24.90 -0.16 -1.60 16 14 C 0.09 0.98 4.87 -3.07 -0.01 0.97 16 15 N -0.61 -8.91 3.33 -175.11 -0.58 -9.49 16 16 C 0.57 9.04 7.81 -12.33 -0.10 8.95 16 17 O -0.53 -10.48 16.67 5.32 0.09 -10.39 16 18 C -0.12 -1.50 5.87 -104.99 -0.62 -2.12 16 19 C -0.06 -0.70 9.59 -39.16 -0.38 -1.07 16 20 C -0.12 -1.04 10.02 -39.67 -0.40 -1.44 16 21 C -0.13 -1.10 7.69 -39.30 -0.30 -1.40 16 22 C 0.06 0.60 4.91 -83.83 -0.41 0.19 16 23 N -0.47 -3.94 5.58 -171.20 -0.96 -4.90 16 24 C 0.05 0.38 6.47 -4.04 -0.03 0.35 16 25 C -0.17 -0.96 10.95 -35.81 -0.39 -1.35 16 26 C -0.17 -0.96 10.94 -35.82 -0.39 -1.35 16 27 C 0.05 0.37 6.43 -4.04 -0.03 0.34 16 28 C -0.10 -1.03 8.52 -38.97 -0.33 -1.36 16 29 C 0.12 1.94 6.33 -2.27 -0.01 1.92 16 30 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 32 H 0.02 0.43 7.98 -51.93 -0.41 0.02 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.77 6.65 -51.93 -0.35 0.42 16 37 H 0.08 0.71 6.82 -51.93 -0.35 0.36 16 38 H 0.14 1.59 7.67 -52.49 -0.40 1.19 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.81 7.02 -52.49 -0.37 0.45 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.43 6.75 -51.93 -0.35 0.08 16 43 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.06 0.44 6.29 -51.93 -0.33 0.11 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.17 1.65 2.77 -57.39 -0.16 1.49 16 48 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 49 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -33.97 390.83 -11.50 -45.47 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.21 Total: 7.61 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -4.10 Total: -5.10 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -1.15 Total: -61.10 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.97 -11.50 -45.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267062373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.334 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds