Wall clock time and date at job start Wed Apr 1 2020 00:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.88298 * 57.42591 * 11 10 9 13 13 C 1.55158 * 111.00640 * 293.54603 * 11 10 9 14 14 C 1.54323 * 102.94316 * 206.42094 * 13 11 10 15 15 N 1.47028 * 107.26890 * 22.19439 * 14 13 11 16 16 C 1.34772 * 125.64556 * 181.10627 * 15 14 13 17 17 O 1.21281 * 120.00020 * 179.97438 * 16 15 14 18 18 C 1.50706 * 120.00005 * 359.96998 * 16 15 14 19 19 C 1.53001 * 109.46977 * 180.02562 * 18 16 15 20 20 N 1.46501 * 109.46946 * 180.02562 * 19 18 16 21 21 C 1.36833 * 125.05982 * 264.69640 * 20 19 18 22 22 C 1.34240 * 109.92839 * 179.81953 * 21 20 19 23 23 C 1.46495 * 106.99604 * 0.42793 * 22 21 20 24 24 C 1.39630 * 134.02924 * 179.71097 * 23 22 21 25 25 C 1.36621 * 119.76346 * 180.02562 * 24 23 22 26 26 C 1.38829 * 120.52814 * 359.97438 * 25 24 23 27 27 C 1.37752 * 120.66866 * 0.02562 * 26 25 24 28 28 C 1.37685 * 125.06211 * 84.99913 * 20 19 18 29 29 C 1.47422 * 108.70412 * 1.05708 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09000 * 110.71519 * 324.78915 * 13 11 10 35 35 H 1.08998 * 110.71793 * 88.05386 * 13 11 10 36 36 H 1.08999 * 109.88234 * 141.60483 * 14 13 11 37 37 H 1.08993 * 109.88058 * 262.61958 * 14 13 11 38 38 H 1.09001 * 109.47150 * 300.00187 * 18 16 15 39 39 H 1.09001 * 109.46877 * 60.00172 * 18 16 15 40 40 H 1.09001 * 109.47064 * 299.99909 * 19 18 16 41 41 H 1.08998 * 109.47639 * 59.99700 * 19 18 16 42 42 H 1.08003 * 125.03491 * 359.97438 * 21 20 19 43 43 H 1.07998 * 126.50340 * 180.15340 * 22 21 20 44 44 H 1.08004 * 120.11682 * 359.97438 * 24 23 22 45 45 H 1.07995 * 119.73753 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.66711 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.11122 * 179.97438 * 27 26 25 48 48 H 1.08997 * 110.36669 * 217.03754 * 29 15 14 49 49 H 1.08994 * 110.36588 * 94.71497 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3948 -4.7585 -0.8607 13 6 0.2620 -4.8667 1.3253 14 6 -0.1208 -6.3569 1.4453 15 7 0.8345 -7.1201 0.6287 16 6 0.8265 -8.4564 0.4540 17 8 1.6668 -8.9816 -0.2452 18 6 -0.2267 -9.2981 1.1276 19 6 -0.0106 -10.7694 0.7679 20 7 -1.0347 -11.5875 1.4222 21 6 -0.8797 -12.2314 2.6196 22 6 -2.0073 -12.8878 2.9354 23 6 -2.9589 -12.6527 1.8467 24 6 -4.2700 -13.0636 1.5982 25 6 -4.9017 -12.6615 0.4554 26 6 -4.2505 -11.8470 -0.4610 27 6 -2.9571 -11.4300 -0.2357 28 6 -2.2944 -11.8278 0.9210 29 6 1.8018 -6.1813 0.0318 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 0.8868 -4.5602 2.1642 35 1 -0.6299 -4.2436 1.2594 36 1 -0.0547 -6.6739 2.4861 37 1 -1.1342 -6.5103 1.0748 38 1 -0.1545 -9.1742 2.2081 39 1 -1.2142 -8.9825 0.7908 40 1 -0.0825 -10.8936 -0.3126 41 1 0.9769 -11.0847 1.1049 42 1 0.0161 -12.2122 3.2225 43 1 -2.1788 -13.4806 3.8217 44 1 -4.7827 -13.6976 2.3064 45 1 -5.9159 -12.9792 0.2637 46 1 -4.7631 -11.5371 -1.3597 47 1 -2.4589 -10.7967 -0.9549 48 1 2.0626 -6.4967 -0.9785 49 1 2.6958 -6.1128 0.6514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267066336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:15 Heat of formation + Delta-G solvation = 37.246373 kcal Electronic energy + Delta-G solvation = -28234.311679 eV Core-core repulsion = 24354.847553 eV Total energy + Delta-G solvation = -3879.464126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64651 -40.25812 -38.00806 -37.32092 -35.01707 -34.15265 -32.54428 -31.40874 -30.26213 -29.60804 -29.14315 -28.68436 -25.68862 -24.23600 -23.06267 -22.76264 -22.60049 -21.75158 -20.43971 -20.20183 -19.35512 -17.86286 -17.31987 -16.85099 -16.80001 -16.45104 -15.90342 -15.70116 -15.34535 -14.75543 -14.50128 -14.33180 -14.07197 -13.88359 -13.80220 -13.60479 -13.38851 -13.20350 -13.02870 -12.88936 -12.68094 -12.61324 -12.55808 -11.94152 -11.86457 -11.67549 -11.62412 -11.12175 -11.10161 -10.87046 -10.72866 -10.57901 -10.46302 -10.17216 -10.01119 -9.91955 -9.22734 -8.93756 -8.82548 -8.46225 -7.95058 -7.06546 -6.15404 -3.15538 0.86112 1.36238 2.30897 2.35175 2.44140 2.88346 3.49163 3.52463 3.66158 3.69957 4.15142 4.28076 4.35221 4.43918 4.50622 4.57420 4.61100 4.73684 4.77767 4.84783 4.88494 4.94499 5.01373 5.14374 5.17945 5.27034 5.30518 5.37407 5.40315 5.47127 5.55063 5.56660 5.66156 5.72882 5.79705 5.84461 5.86227 5.86800 6.01673 6.17352 6.20450 6.25879 6.35412 6.48569 6.51941 6.56657 6.67881 6.94245 6.98971 7.29867 7.75910 7.87589 8.70848 9.17090 10.03488 10.17980 11.33066 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.001755 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.020960 B =15949.988901 C =16575.800802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.742 5.742 10 C 0.170 3.830 11 C -0.107 4.107 12 H 0.083 0.917 13 C -0.121 4.121 14 C 0.098 3.902 15 N -0.614 5.614 16 C 0.532 3.468 17 O -0.546 6.546 18 C -0.154 4.154 19 C 0.127 3.873 20 N -0.484 5.484 21 C 0.053 3.947 22 C -0.206 4.206 23 C -0.111 4.111 24 C -0.073 4.073 25 C -0.148 4.148 26 C -0.100 4.100 27 C -0.128 4.128 28 C 0.097 3.903 29 C 0.113 3.887 30 H 0.254 0.746 31 H 0.367 0.633 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.168 0.832 43 H 0.146 0.854 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.118 0.882 48 H 0.079 0.921 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 -27.664 5.246 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.083 0.917 9 N -0.388 5.388 10 C 0.042 3.958 11 C -0.127 4.127 12 H 0.102 0.898 13 C -0.159 4.159 14 C -0.025 4.025 15 N -0.347 5.347 16 C 0.320 3.680 17 O -0.424 6.424 18 C -0.195 4.195 19 C 0.005 3.995 20 N -0.167 5.167 21 C -0.072 4.072 22 C -0.231 4.231 23 C -0.115 4.115 24 C -0.091 4.091 25 C -0.167 4.167 26 C -0.120 4.120 27 C -0.148 4.148 28 C -0.008 4.008 29 C -0.009 4.009 30 H 0.065 0.935 31 H 0.200 0.800 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.136 0.864 48 H 0.097 0.903 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.569 -26.174 4.742 27.177 hybrid contribution -0.076 -1.538 0.093 1.543 sum -5.646 -27.712 4.836 28.691 Atomic orbital electron populations 1.70900 1.06023 1.28320 1.53626 1.25796 0.97059 1.01032 1.00370 0.83234 0.74221 0.75545 0.75894 1.21004 1.22248 1.22233 1.20027 0.92069 0.85755 1.48500 0.91728 1.42298 1.04851 1.00785 1.90821 1.20476 0.92615 0.84371 0.98337 1.22594 0.98137 0.93902 0.98057 0.89830 1.22644 1.01541 0.93151 0.98554 1.22171 0.92700 0.92750 0.94879 1.48541 1.31470 1.05604 1.49098 1.19954 0.85669 0.81026 0.81338 1.90728 1.40085 1.71579 1.40016 1.22010 0.99799 0.94825 1.02852 1.21471 0.90774 0.88126 0.99115 1.44044 1.11241 1.42731 1.18634 1.21862 1.00207 0.97362 0.87739 1.21678 0.93117 1.07745 1.00592 1.19246 0.94852 1.01578 0.95852 1.20269 0.92622 0.99081 0.97156 1.20634 1.00246 1.00707 0.95137 1.20824 0.93790 0.97931 0.99411 1.20077 0.95374 1.03603 0.95787 1.18287 0.85566 1.00474 0.96518 1.22272 0.91822 0.87725 0.99113 0.93485 0.79983 0.95878 0.95876 0.90054 0.89613 0.91384 0.91338 0.88221 0.88263 0.88729 0.88213 0.81503 0.83635 0.86188 0.86133 0.85803 0.86398 0.90279 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.68 13.70 55.49 0.76 -27.92 16 2 C -0.05 -1.29 5.50 -17.43 -0.10 -1.39 16 3 Si 1.08 25.60 29.92 -169.99 -5.09 20.52 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.33 -9.26 9.99 -15.06 -0.15 -9.41 16 8 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.74 -18.04 5.45 -59.91 -0.33 -18.36 16 10 C 0.17 3.26 5.71 -4.05 -0.02 3.24 16 11 C -0.11 -1.60 3.10 -88.47 -0.27 -1.87 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 13 C -0.12 -1.58 6.13 -24.90 -0.15 -1.74 16 14 C 0.10 1.02 6.49 -3.06 -0.02 1.00 16 15 N -0.61 -7.40 3.33 -170.52 -0.57 -7.97 16 16 C 0.53 6.36 7.85 -10.98 -0.09 6.27 16 17 O -0.55 -8.26 16.24 5.56 0.09 -8.17 16 18 C -0.15 -1.32 5.22 -27.88 -0.15 -1.46 16 19 C 0.13 1.08 5.29 -4.04 -0.02 1.06 16 20 N -0.48 -4.38 2.78 -114.42 -0.32 -4.70 16 21 C 0.05 0.42 11.27 -16.73 -0.19 0.23 16 22 C -0.21 -1.77 11.08 -37.67 -0.42 -2.19 16 23 C -0.11 -1.13 6.37 -105.13 -0.67 -1.80 16 24 C -0.07 -0.65 10.05 -39.65 -0.40 -1.05 16 25 C -0.15 -1.23 9.97 -39.95 -0.40 -1.63 16 26 C -0.10 -0.86 10.01 -39.54 -0.40 -1.26 16 27 C -0.13 -1.22 10.00 -39.43 -0.39 -1.62 16 28 C 0.10 1.01 6.81 -83.99 -0.57 0.43 16 29 C 0.11 1.52 6.38 -2.53 -0.02 1.51 16 30 H 0.25 7.55 6.77 -40.82 -0.28 7.27 16 31 H 0.37 9.02 6.37 -40.82 -0.26 8.76 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 34 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.10 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 44 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 49 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -34.12 404.62 -11.52 -45.64 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.75 Total: 6.53 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -4.42 Total: -11.66 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.45 Total: -58.95 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.09 Total: 20.52 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.12 -11.52 -45.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267066336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.891 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds