Wall clock time and date at job start Wed Apr 1 2020 00:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.88298 * 57.42591 * 11 10 9 13 13 C 1.55158 * 111.00640 * 293.54603 * 11 10 9 14 14 C 1.54323 * 102.94316 * 206.42094 * 13 11 10 15 15 N 1.47028 * 107.26890 * 22.19439 * 14 13 11 16 16 C 1.34772 * 125.64556 * 181.10627 * 15 14 13 17 17 O 1.21281 * 120.00020 * 179.97438 * 16 15 14 18 18 C 1.50706 * 120.00005 * 359.96998 * 16 15 14 19 19 C 1.53001 * 109.46977 * 180.02562 * 18 16 15 20 20 N 1.46501 * 109.46946 * 180.02562 * 19 18 16 21 21 C 1.36833 * 125.05982 * 264.69640 * 20 19 18 22 22 C 1.34240 * 109.92839 * 179.81953 * 21 20 19 23 23 C 1.46495 * 106.99604 * 0.42793 * 22 21 20 24 24 C 1.39630 * 134.02924 * 179.71097 * 23 22 21 25 25 C 1.36621 * 119.76346 * 180.02562 * 24 23 22 26 26 C 1.38829 * 120.52814 * 359.97438 * 25 24 23 27 27 C 1.37752 * 120.66866 * 0.02562 * 26 25 24 28 28 C 1.37685 * 125.06211 * 84.99913 * 20 19 18 29 29 C 1.47422 * 108.70412 * 1.05708 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09000 * 110.71519 * 324.78915 * 13 11 10 35 35 H 1.08998 * 110.71793 * 88.05386 * 13 11 10 36 36 H 1.08999 * 109.88234 * 141.60483 * 14 13 11 37 37 H 1.08993 * 109.88058 * 262.61958 * 14 13 11 38 38 H 1.09001 * 109.47150 * 300.00187 * 18 16 15 39 39 H 1.09001 * 109.46877 * 60.00172 * 18 16 15 40 40 H 1.09001 * 109.47064 * 299.99909 * 19 18 16 41 41 H 1.08998 * 109.47639 * 59.99700 * 19 18 16 42 42 H 1.08003 * 125.03491 * 359.97438 * 21 20 19 43 43 H 1.07998 * 126.50340 * 180.15340 * 22 21 20 44 44 H 1.08004 * 120.11682 * 359.97438 * 24 23 22 45 45 H 1.07995 * 119.73753 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.66711 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.11122 * 179.97438 * 27 26 25 48 48 H 1.08997 * 110.36669 * 217.03754 * 29 15 14 49 49 H 1.08994 * 110.36588 * 94.71497 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3948 -4.7585 -0.8607 13 6 0.2620 -4.8667 1.3253 14 6 -0.1208 -6.3569 1.4453 15 7 0.8345 -7.1201 0.6287 16 6 0.8265 -8.4564 0.4540 17 8 1.6668 -8.9816 -0.2452 18 6 -0.2267 -9.2981 1.1276 19 6 -0.0106 -10.7694 0.7679 20 7 -1.0347 -11.5875 1.4222 21 6 -0.8797 -12.2314 2.6196 22 6 -2.0073 -12.8878 2.9354 23 6 -2.9589 -12.6527 1.8467 24 6 -4.2700 -13.0636 1.5982 25 6 -4.9017 -12.6615 0.4554 26 6 -4.2505 -11.8470 -0.4610 27 6 -2.9571 -11.4300 -0.2357 28 6 -2.2944 -11.8278 0.9210 29 6 1.8018 -6.1813 0.0318 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 0.8868 -4.5602 2.1642 35 1 -0.6299 -4.2436 1.2594 36 1 -0.0547 -6.6739 2.4861 37 1 -1.1342 -6.5103 1.0748 38 1 -0.1545 -9.1742 2.2081 39 1 -1.2142 -8.9825 0.7908 40 1 -0.0825 -10.8936 -0.3126 41 1 0.9769 -11.0847 1.1049 42 1 0.0161 -12.2122 3.2225 43 1 -2.1788 -13.4806 3.8217 44 1 -4.7827 -13.6976 2.3064 45 1 -5.9159 -12.9792 0.2637 46 1 -4.7631 -11.5371 -1.3597 47 1 -2.4589 -10.7967 -0.9549 48 1 2.0626 -6.4967 -0.9785 49 1 2.6958 -6.1128 0.6514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267066336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:14 Heat of formation + Delta-G solvation = 19.014968 kcal Electronic energy + Delta-G solvation = -28235.102252 eV Core-core repulsion = 24354.847553 eV Total energy + Delta-G solvation = -3880.254699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.28140 -41.24836 -39.10970 -37.98228 -36.77697 -34.86648 -34.07726 -32.24051 -31.66135 -30.49220 -29.98684 -29.51477 -27.05956 -25.48382 -24.38858 -23.96395 -23.39646 -22.39142 -21.48371 -21.05815 -20.28908 -19.38799 -18.64630 -17.79214 -17.54617 -17.33303 -16.76978 -16.55941 -16.29712 -16.05149 -15.69611 -15.50211 -15.24038 -15.10695 -14.84542 -14.72548 -14.40508 -13.99191 -13.96081 -13.91340 -13.60784 -13.46649 -13.43100 -13.11304 -12.80779 -12.59934 -12.54535 -12.33540 -12.30727 -12.19924 -11.92615 -11.87013 -11.75405 -11.73218 -11.29652 -11.12545 -10.94004 -10.59277 -9.81637 -9.12656 -9.11340 -8.57831 -8.40775 -5.34960 0.22444 0.70144 1.42229 1.56883 1.59229 1.68375 1.82516 1.84965 2.04812 2.70269 3.00254 3.22465 3.38680 3.51757 3.54007 3.63285 3.69069 3.75471 3.85302 3.99012 4.09472 4.14611 4.19239 4.23832 4.28569 4.29740 4.35699 4.43158 4.53229 4.58673 4.64381 4.67780 4.72289 4.75573 4.81550 4.88305 4.94398 4.96381 5.07930 5.09581 5.12180 5.18638 5.28257 5.57425 5.57828 5.71812 5.85960 5.90817 6.31828 6.35740 6.37826 6.49666 6.93162 7.08230 7.98636 8.08939 9.11425 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.001755 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.020960 B =15949.988901 C =16575.800802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.103 4.103 3 Si 1.127 2.873 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.753 5.753 10 C 0.170 3.830 11 C -0.098 4.098 12 H 0.076 0.924 13 C -0.118 4.118 14 C 0.105 3.895 15 N -0.615 5.615 16 C 0.532 3.468 17 O -0.581 6.581 18 C -0.139 4.139 19 C 0.132 3.868 20 N -0.486 5.486 21 C 0.052 3.948 22 C -0.219 4.219 23 C -0.135 4.135 24 C -0.084 4.084 25 C -0.154 4.154 26 C -0.108 4.108 27 C -0.144 4.144 28 C 0.075 3.925 29 C 0.120 3.880 30 H 0.245 0.755 31 H 0.363 0.637 32 H 0.017 0.983 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.197 0.803 43 H 0.163 0.837 44 H 0.136 0.864 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.121 0.879 48 H 0.070 0.930 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 -28.689 6.414 30.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.294 4.294 3 Si 0.952 3.048 4 H -0.218 1.218 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.468 4.468 8 H 0.083 0.917 9 N -0.397 5.397 10 C 0.043 3.957 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.156 4.156 14 C -0.017 4.017 15 N -0.348 5.348 16 C 0.322 3.678 17 O -0.462 6.462 18 C -0.180 4.180 19 C 0.010 3.990 20 N -0.169 5.169 21 C -0.072 4.072 22 C -0.244 4.244 23 C -0.140 4.140 24 C -0.103 4.103 25 C -0.173 4.173 26 C -0.127 4.127 27 C -0.164 4.164 28 C -0.031 4.031 29 C -0.003 4.003 30 H 0.056 0.944 31 H 0.196 0.804 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.214 0.786 43 H 0.180 0.820 44 H 0.154 0.846 45 H 0.159 0.841 46 H 0.159 0.841 47 H 0.139 0.861 48 H 0.089 0.911 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.614 -27.245 5.923 28.441 hybrid contribution -0.044 -1.294 -0.295 1.328 sum -5.658 -28.538 5.628 29.633 Atomic orbital electron populations 1.71000 1.07072 1.27952 1.56085 1.27187 0.97166 1.04585 1.00461 0.82630 0.73398 0.71660 0.77120 1.21850 1.20312 1.20574 1.20378 0.92390 0.87146 1.46922 0.91693 1.42464 1.04889 1.01675 1.90721 1.20575 0.93314 0.83990 0.97839 1.22366 0.97372 0.93020 0.99044 0.90528 1.22581 1.00773 0.95283 0.96974 1.22213 0.92925 0.90343 0.96200 1.48591 1.31389 1.05722 1.49101 1.20493 0.85723 0.80848 0.80723 1.90716 1.41698 1.72141 1.41629 1.21927 0.98548 0.93969 1.03522 1.21396 0.90958 0.88159 0.98535 1.44103 1.10879 1.42894 1.19008 1.22377 1.01051 0.96434 0.87332 1.21985 0.93084 1.08350 1.00975 1.19651 0.95685 1.02021 0.96595 1.20573 0.92552 0.99334 0.97809 1.20946 1.01204 1.00289 0.94816 1.21129 0.93656 0.97742 1.00146 1.20265 0.95991 1.04193 0.95980 1.18547 0.86309 1.01204 0.97039 1.22069 0.92129 0.87147 0.98988 0.94436 0.80440 0.96504 0.95642 0.90712 0.90268 0.88787 0.89615 0.86234 0.87639 0.89892 0.87592 0.78642 0.81951 0.84578 0.84051 0.84096 0.86115 0.91125 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.82 13.70 21.65 0.30 -59.53 16 2 C -0.10 -5.88 5.50 84.86 0.47 -5.42 16 3 Si 1.13 51.26 29.92 68.60 2.05 53.32 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.34 -18.77 9.99 84.03 0.84 -17.93 16 8 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 9 N -0.75 -36.91 5.45 -343.47 -1.87 -38.78 16 10 C 0.17 6.51 5.71 86.38 0.49 7.01 16 11 C -0.10 -2.89 3.10 -9.40 -0.03 -2.92 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 13 C -0.12 -2.96 6.13 31.78 0.19 -2.76 16 14 C 0.11 1.92 6.49 86.73 0.56 2.48 16 15 N -0.62 -13.73 3.33 -811.81 -2.70 -16.43 16 16 C 0.53 11.86 7.85 87.66 0.69 12.55 16 17 O -0.58 -17.18 16.24 -3.03 -0.05 -17.23 16 18 C -0.14 -2.07 5.22 29.85 0.16 -1.91 16 19 C 0.13 2.06 5.29 86.38 0.46 2.51 16 20 N -0.49 -8.12 2.78 -515.93 -1.43 -9.55 16 21 C 0.05 0.72 11.27 83.00 0.94 1.66 16 22 C -0.22 -3.42 11.08 23.51 0.26 -3.16 16 23 C -0.13 -2.63 6.37 -20.20 -0.13 -2.76 16 24 C -0.08 -1.42 10.05 22.23 0.22 -1.20 16 25 C -0.15 -2.37 9.97 22.03 0.22 -2.15 16 26 C -0.11 -1.75 10.01 22.30 0.22 -1.53 16 27 C -0.14 -2.69 10.00 22.37 0.22 -2.46 16 28 C 0.07 1.49 6.81 39.03 0.27 1.76 16 29 C 0.12 3.13 6.38 86.86 0.55 3.68 16 30 H 0.25 14.88 6.77 -92.71 -0.63 14.25 16 31 H 0.36 18.17 6.37 -92.71 -0.59 17.58 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.03 0.98 8.11 -2.39 -0.02 0.96 16 34 H 0.07 1.98 8.01 -2.39 -0.02 1.96 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 41 H 0.11 1.52 8.07 -2.39 -0.02 1.50 16 42 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 44 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 48 H 0.07 1.97 8.04 -2.39 -0.02 1.95 16 49 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 Total: -1.00 -73.69 404.62 3.39 -70.30 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.49 Total: 30.45 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 6.61 Total: -12.55 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -5.71 Total: -124.29 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.05 Total: 53.32 kcal Total: -73.69 3.39 -70.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267066336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.318 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds