Wall clock time and date at job start Wed Apr 1 2020 00:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47096 * 269.99993 * 3 2 1 5 5 H 1.48501 * 109.47294 * 30.00412 * 3 2 1 6 6 H 1.48503 * 109.46958 * 150.00436 * 3 2 1 7 7 C 1.38809 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00211 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.47032 * 125.64852 * 359.95905 * 9 7 2 11 11 C 1.54325 * 107.26795 * 181.09610 * 10 9 7 12 12 C 1.55154 * 102.94569 * 22.19440 * 11 10 9 13 13 H 1.09004 * 111.03494 * 82.58362 * 12 11 10 14 14 C 1.52997 * 111.00471 * 206.42092 * 12 11 10 15 15 N 1.46496 * 109.47194 * 178.64867 * 14 12 11 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 16 21 21 C 1.36832 * 125.06195 * 264.69187 * 20 19 18 22 22 C 1.34241 * 109.92993 * 179.81659 * 21 20 19 23 23 C 1.46488 * 106.99614 * 0.43207 * 22 21 20 24 24 C 1.39631 * 134.02723 * 179.70216 * 23 22 21 25 25 C 1.36627 * 119.76238 * 180.02562 * 24 23 22 26 26 C 1.38836 * 120.52436 * 0.02562 * 25 24 23 27 27 C 1.37743 * 120.66875 * 0.02562 * 26 25 24 28 28 C 1.37688 * 125.06660 * 84.99972 * 20 19 18 29 29 C 1.47423 * 125.65037 * 180.02562 * 9 7 2 30 30 H 0.97004 * 119.99538 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.88032 * 300.51463 * 10 9 7 32 32 H 1.08993 * 109.87740 * 61.52390 * 10 9 7 33 33 H 1.09002 * 110.71857 * 263.82925 * 11 10 9 34 34 H 1.08997 * 110.71751 * 140.56030 * 11 10 9 35 35 H 1.09002 * 109.47045 * 58.64993 * 14 12 11 36 36 H 1.09001 * 109.47375 * 298.64918 * 14 12 11 37 37 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 38 38 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 39 39 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 40 40 H 1.09001 * 109.47194 * 299.99742 * 19 18 16 41 41 H 1.08992 * 109.47399 * 59.99914 * 19 18 16 42 42 H 1.08001 * 125.03518 * 359.97438 * 21 20 19 43 43 H 1.08000 * 126.49823 * 180.15041 * 22 21 20 44 44 H 1.07993 * 120.12195 * 0.03675 * 24 23 22 45 45 H 1.07994 * 119.73455 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.66084 * 180.02562 * 26 25 24 47 47 H 1.07998 * 120.11022 * 179.97438 * 27 26 25 48 48 H 1.08997 * 110.36648 * 36.99560 * 29 9 7 49 49 H 1.09003 * 110.45592 * 274.71973 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1376 -2.5327 0.0009 11 6 -0.4484 -4.0441 0.0285 12 6 0.8524 -4.6559 0.6122 13 1 0.8588 -4.5961 1.7006 14 6 1.0370 -6.1007 0.1441 15 7 2.2887 -6.6339 0.6874 16 6 2.6610 -7.8983 0.4060 17 8 1.9601 -8.5945 -0.2974 18 6 3.9484 -8.4470 0.9654 19 6 4.1330 -9.8918 0.4972 20 7 5.3841 -10.4254 1.0415 21 6 6.5842 -10.4399 0.3843 22 6 7.5263 -10.9933 1.1643 23 6 6.8741 -11.3728 2.4199 24 6 7.3143 -11.9821 3.5966 25 6 6.4321 -12.2056 4.6157 26 6 5.1008 -11.8321 4.4905 27 6 4.6451 -11.2306 3.3381 28 6 5.5263 -10.9923 2.2882 29 6 1.9334 -3.7311 -0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5568 -2.0518 0.8846 32 1 -0.5554 -2.0823 -0.8995 33 1 -0.6325 -4.4184 -0.9786 34 1 -1.2978 -4.2512 0.6793 35 1 1.0729 -6.1281 -0.9449 36 1 0.2014 -6.7061 0.4955 37 1 2.8492 -6.0772 1.2504 38 1 3.9122 -8.4193 2.0545 39 1 4.7842 -7.8419 0.6141 40 1 3.2972 -10.4971 0.8482 41 1 4.1692 -9.9191 -0.5918 42 1 6.7496 -10.0600 -0.6130 43 1 8.5666 -11.1361 0.9120 44 1 8.3483 -12.2755 3.7009 45 1 6.7729 -12.6772 5.5254 46 1 4.4155 -12.0150 5.3050 47 1 3.6075 -10.9442 3.2503 48 1 2.8333 -3.7402 0.6144 49 1 2.1670 -4.0435 -1.0184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267305698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:54 Heat of formation + Delta-G solvation = 43.875368 kcal Electronic energy + Delta-G solvation = -28117.046140 eV Core-core repulsion = 24237.869469 eV Total energy + Delta-G solvation = -3879.176671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60312 -39.87709 -37.78380 -37.31909 -34.80456 -34.07512 -32.57816 -31.42342 -30.04698 -29.38447 -28.95172 -28.15788 -25.76161 -24.60113 -23.30673 -22.75351 -21.73777 -20.78613 -20.35862 -20.00246 -19.71095 -17.78833 -16.95708 -16.74417 -16.62129 -16.10997 -15.92476 -15.66343 -15.19936 -14.78072 -14.66282 -14.26494 -14.20155 -13.75892 -13.69729 -13.50541 -13.15537 -12.91646 -12.82738 -12.77171 -12.40621 -12.06283 -11.90958 -11.79478 -11.61780 -11.57559 -11.44687 -11.08629 -10.94490 -10.83470 -10.51819 -10.22365 -10.09029 -9.97556 -9.92481 -9.80273 -9.70330 -9.09287 -8.64317 -8.42888 -7.91461 -6.88197 -5.75598 -3.09469 0.89093 1.39104 2.39088 2.46358 2.48782 3.19073 3.36788 3.41653 3.43682 3.69036 4.34010 4.36768 4.41345 4.45299 4.54315 4.69459 4.78246 4.88811 4.99600 5.03795 5.07883 5.17231 5.20783 5.31257 5.35635 5.42957 5.44767 5.49030 5.58181 5.62354 5.69890 5.82449 5.82634 5.96865 5.99190 6.22848 6.27713 6.33344 6.37728 6.42946 6.47322 6.52061 6.55397 6.61279 6.84138 6.97802 7.03197 7.38931 7.51398 7.58312 7.78419 8.06438 8.21652 9.17589 9.77977 10.43708 11.36065 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016458 B = 0.001805 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.842405 B =15504.541459 C =16114.709433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.721 5.721 16 C 0.516 3.484 17 O -0.547 6.547 18 C -0.161 4.161 19 C 0.127 3.873 20 N -0.483 5.483 21 C 0.054 3.946 22 C -0.207 4.207 23 C -0.111 4.111 24 C -0.073 4.073 25 C -0.149 4.149 26 C -0.101 4.101 27 C -0.128 4.128 28 C 0.097 3.903 29 C 0.142 3.858 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.404 0.596 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.168 0.832 43 H 0.146 0.854 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.118 0.882 48 H 0.034 0.966 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.972 -24.290 5.728 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.372 5.372 16 C 0.302 3.698 17 O -0.426 6.426 18 C -0.202 4.202 19 C 0.005 3.995 20 N -0.166 5.166 21 C -0.071 4.071 22 C -0.232 4.232 23 C -0.115 4.115 24 C -0.091 4.091 25 C -0.168 4.168 26 C -0.121 4.121 27 C -0.148 4.148 28 C -0.009 4.009 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.238 0.762 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.186 0.814 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.136 0.864 48 H 0.053 0.947 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 10.114 -24.392 5.053 26.885 hybrid contribution 0.665 1.364 0.224 1.534 sum 10.779 -23.029 5.277 25.968 Atomic orbital electron populations 1.69967 1.04887 1.25075 1.56952 1.24820 0.95751 0.97735 1.02199 0.86111 0.78554 0.83441 0.77592 1.21581 1.21644 1.20702 1.19043 0.90402 0.82426 1.43967 0.90492 1.44476 1.01734 0.99832 1.87191 1.21158 0.84310 0.88155 1.01190 1.22858 0.95399 0.99416 0.99685 1.22620 0.98713 0.91952 1.00537 0.90215 1.21426 0.84981 0.93877 0.98857 1.46090 1.24980 1.13585 1.52540 1.20289 0.86912 0.81931 0.80714 1.90720 1.55056 1.58399 1.38377 1.22047 0.97234 0.97418 1.03452 1.21469 0.84562 0.93093 1.00339 1.44064 1.08847 1.51145 1.12565 1.21882 0.83938 1.02621 0.98617 1.21680 0.99199 1.08727 0.93621 1.19248 0.92754 1.03900 0.95629 1.20268 0.99416 0.97733 0.91703 1.20628 0.93631 1.03333 0.99217 1.20812 0.95928 0.98572 0.96744 1.20068 0.98435 1.03817 0.92498 1.18287 0.95465 1.00105 0.87006 1.21551 0.93926 0.86234 0.96684 0.93717 0.93546 0.93823 0.92187 0.91940 0.91270 0.91602 0.76195 0.88259 0.88044 0.88773 0.88187 0.81438 0.83647 0.86216 0.86185 0.85858 0.86377 0.94728 0.96381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.31 55.49 0.57 -26.26 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -15.10 3.40 -170.08 -0.58 -15.68 16 10 C 0.18 4.19 5.38 -3.06 -0.02 4.17 16 11 C -0.13 -2.38 6.42 -24.90 -0.16 -2.54 16 12 C -0.12 -1.87 3.10 -88.48 -0.27 -2.15 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.13 1.78 5.12 -4.05 -0.02 1.76 16 15 N -0.72 -8.23 5.41 -60.30 -0.33 -8.55 16 16 C 0.52 5.89 7.83 -10.98 -0.09 5.80 16 17 O -0.55 -8.11 15.98 5.56 0.09 -8.03 16 18 C -0.16 -1.32 6.02 -27.88 -0.17 -1.49 16 19 C 0.13 1.08 5.29 -4.04 -0.02 1.06 16 20 N -0.48 -4.44 2.78 -114.43 -0.32 -4.76 16 21 C 0.05 0.45 11.27 -16.73 -0.19 0.26 16 22 C -0.21 -1.84 11.08 -37.67 -0.42 -2.26 16 23 C -0.11 -1.14 6.37 -105.14 -0.67 -1.82 16 24 C -0.07 -0.66 10.05 -39.64 -0.40 -1.05 16 25 C -0.15 -1.23 9.97 -39.94 -0.40 -1.63 16 26 C -0.10 -0.86 10.01 -39.54 -0.40 -1.25 16 27 C -0.13 -1.20 10.00 -39.43 -0.39 -1.60 16 28 C 0.10 1.01 6.81 -83.99 -0.57 0.44 16 29 C 0.14 2.75 6.41 -2.54 -0.02 2.74 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 32 H 0.04 1.15 7.50 -51.93 -0.39 0.77 16 33 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.40 3.96 8.34 -40.82 -0.34 3.62 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.10 0.82 8.07 -51.93 -0.42 0.40 16 42 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 LS Contribution 402.52 15.07 6.07 6.07 Total: -1.00 -33.27 402.52 -11.79 -45.06 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.83 Total: 1.67 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -4.45 Total: -6.38 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.65 Total: -55.25 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.27 -11.79 -45.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267305698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.939 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds