Wall clock time and date at job start Wed Apr 1 2020 00:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47096 * 269.99993 * 3 2 1 5 5 H 1.48501 * 109.47294 * 30.00412 * 3 2 1 6 6 H 1.48503 * 109.46958 * 150.00436 * 3 2 1 7 7 C 1.38809 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00211 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.47032 * 125.64852 * 359.95905 * 9 7 2 11 11 C 1.54325 * 107.26795 * 181.09610 * 10 9 7 12 12 C 1.55154 * 102.94569 * 22.19440 * 11 10 9 13 13 H 1.09004 * 111.03494 * 82.58362 * 12 11 10 14 14 C 1.52997 * 111.00471 * 206.42092 * 12 11 10 15 15 N 1.46496 * 109.47194 * 178.64867 * 14 12 11 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 16 21 21 C 1.36832 * 125.06195 * 264.69187 * 20 19 18 22 22 C 1.34241 * 109.92993 * 179.81659 * 21 20 19 23 23 C 1.46488 * 106.99614 * 0.43207 * 22 21 20 24 24 C 1.39631 * 134.02723 * 179.70216 * 23 22 21 25 25 C 1.36627 * 119.76238 * 180.02562 * 24 23 22 26 26 C 1.38836 * 120.52436 * 0.02562 * 25 24 23 27 27 C 1.37743 * 120.66875 * 0.02562 * 26 25 24 28 28 C 1.37688 * 125.06660 * 84.99972 * 20 19 18 29 29 C 1.47423 * 125.65037 * 180.02562 * 9 7 2 30 30 H 0.97004 * 119.99538 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.88032 * 300.51463 * 10 9 7 32 32 H 1.08993 * 109.87740 * 61.52390 * 10 9 7 33 33 H 1.09002 * 110.71857 * 263.82925 * 11 10 9 34 34 H 1.08997 * 110.71751 * 140.56030 * 11 10 9 35 35 H 1.09002 * 109.47045 * 58.64993 * 14 12 11 36 36 H 1.09001 * 109.47375 * 298.64918 * 14 12 11 37 37 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 38 38 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 39 39 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 40 40 H 1.09001 * 109.47194 * 299.99742 * 19 18 16 41 41 H 1.08992 * 109.47399 * 59.99914 * 19 18 16 42 42 H 1.08001 * 125.03518 * 359.97438 * 21 20 19 43 43 H 1.08000 * 126.49823 * 180.15041 * 22 21 20 44 44 H 1.07993 * 120.12195 * 0.03675 * 24 23 22 45 45 H 1.07994 * 119.73455 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.66084 * 180.02562 * 26 25 24 47 47 H 1.07998 * 120.11022 * 179.97438 * 27 26 25 48 48 H 1.08997 * 110.36648 * 36.99560 * 29 9 7 49 49 H 1.09003 * 110.45592 * 274.71973 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1376 -2.5327 0.0009 11 6 -0.4484 -4.0441 0.0285 12 6 0.8524 -4.6559 0.6122 13 1 0.8588 -4.5961 1.7006 14 6 1.0370 -6.1007 0.1441 15 7 2.2887 -6.6339 0.6874 16 6 2.6610 -7.8983 0.4060 17 8 1.9601 -8.5945 -0.2974 18 6 3.9484 -8.4470 0.9654 19 6 4.1330 -9.8918 0.4972 20 7 5.3841 -10.4254 1.0415 21 6 6.5842 -10.4399 0.3843 22 6 7.5263 -10.9933 1.1643 23 6 6.8741 -11.3728 2.4199 24 6 7.3143 -11.9821 3.5966 25 6 6.4321 -12.2056 4.6157 26 6 5.1008 -11.8321 4.4905 27 6 4.6451 -11.2306 3.3381 28 6 5.5263 -10.9923 2.2882 29 6 1.9334 -3.7311 -0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5568 -2.0518 0.8846 32 1 -0.5554 -2.0823 -0.8995 33 1 -0.6325 -4.4184 -0.9786 34 1 -1.2978 -4.2512 0.6793 35 1 1.0729 -6.1281 -0.9449 36 1 0.2014 -6.7061 0.4955 37 1 2.8492 -6.0772 1.2504 38 1 3.9122 -8.4193 2.0545 39 1 4.7842 -7.8419 0.6141 40 1 3.2972 -10.4971 0.8482 41 1 4.1692 -9.9191 -0.5918 42 1 6.7496 -10.0600 -0.6130 43 1 8.5666 -11.1361 0.9120 44 1 8.3483 -12.2755 3.7009 45 1 6.7729 -12.6772 5.5254 46 1 4.4155 -12.0150 5.3050 47 1 3.6075 -10.9442 3.2503 48 1 2.8333 -3.7402 0.6144 49 1 2.1670 -4.0435 -1.0184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267305698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:53 Heat of formation + Delta-G solvation = 25.558624 kcal Electronic energy + Delta-G solvation = -28117.840414 eV Core-core repulsion = 24237.869469 eV Total energy + Delta-G solvation = -3879.970945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.23910 -40.85358 -39.29347 -37.97213 -36.08844 -34.77586 -34.30762 -32.19232 -31.58516 -30.35047 -29.79420 -29.35105 -27.32970 -25.81338 -24.50682 -23.41595 -22.39722 -22.10790 -21.48526 -21.11787 -20.89256 -18.93051 -18.43478 -17.61524 -17.39299 -17.11307 -16.79806 -16.69669 -16.26619 -16.25171 -15.69472 -15.46952 -15.16783 -14.87963 -14.67476 -14.38086 -14.21435 -13.93887 -13.83294 -13.68034 -13.51957 -13.41259 -13.34754 -13.02976 -12.76749 -12.64648 -12.50710 -12.26062 -12.21638 -12.03119 -11.92737 -11.85754 -11.70381 -11.54865 -11.47069 -10.99491 -10.71476 -10.55889 -10.09961 -9.08391 -8.90516 -8.54944 -7.85890 -5.21388 0.25295 0.73248 1.45351 1.47079 1.55640 1.57391 1.70886 1.85292 2.32552 2.48745 3.03213 3.32421 3.59591 3.63550 3.70500 3.75279 3.82269 3.94870 4.01985 4.02297 4.06695 4.18187 4.31671 4.38554 4.41309 4.44378 4.61148 4.61849 4.69538 4.71298 4.79891 4.80914 4.84764 4.91678 4.99231 5.05631 5.07414 5.10148 5.21454 5.34755 5.45135 5.45735 5.60535 5.67029 5.74474 5.77607 5.88654 5.93683 6.19612 6.34857 6.40996 6.49886 7.09657 7.17610 7.77646 8.41718 9.24528 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016458 B = 0.001805 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.842405 B =15504.541459 C =16114.709433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.241 4.241 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.089 0.911 14 C 0.144 3.856 15 N -0.717 5.717 16 C 0.520 3.480 17 O -0.582 6.582 18 C -0.147 4.147 19 C 0.131 3.869 20 N -0.485 5.485 21 C 0.051 3.949 22 C -0.222 4.222 23 C -0.136 4.136 24 C -0.086 4.086 25 C -0.154 4.154 26 C -0.107 4.107 27 C -0.142 4.142 28 C 0.075 3.925 29 C 0.138 3.862 30 H 0.246 0.754 31 H 0.012 0.988 32 H 0.003 0.997 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.413 0.587 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.195 0.805 43 H 0.161 0.839 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.125 0.875 48 H 0.049 0.951 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.524 -25.583 6.454 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.107 0.893 14 C 0.020 3.980 15 N -0.368 5.368 16 C 0.307 3.693 17 O -0.462 6.462 18 C -0.187 4.187 19 C 0.009 3.991 20 N -0.168 5.168 21 C -0.073 4.073 22 C -0.246 4.246 23 C -0.141 4.141 24 C -0.104 4.104 25 C -0.173 4.173 26 C -0.126 4.126 27 C -0.162 4.162 28 C -0.031 4.031 29 C 0.013 3.987 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.022 0.978 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.212 0.788 43 H 0.179 0.821 44 H 0.152 0.848 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.143 0.857 48 H 0.067 0.933 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.708 -25.715 5.793 28.843 hybrid contribution 0.214 1.710 -0.001 1.723 sum 11.923 -24.005 5.792 27.421 Atomic orbital electron populations 1.70197 1.06322 1.25210 1.58398 1.25684 0.96647 1.01152 1.02802 0.85076 0.77732 0.79123 0.77390 1.21495 1.22200 1.19110 1.19470 0.91053 0.83748 1.42736 0.89802 1.44812 1.02490 1.01280 1.86989 1.20927 0.83869 0.91889 0.97636 1.22720 0.97259 0.94930 1.01262 1.22418 0.95919 0.92549 1.00663 0.89317 1.21151 0.86339 0.92179 0.98302 1.46002 1.24456 1.13867 1.52508 1.20717 0.87368 0.81370 0.79866 1.90713 1.56327 1.59202 1.39985 1.21955 0.95763 0.97197 1.03814 1.21416 0.84220 0.93049 1.00437 1.44126 1.09207 1.51146 1.12369 1.22364 0.83388 1.02045 0.99508 1.21978 1.00199 1.09077 0.93373 1.19647 0.93245 1.04576 0.96642 1.20563 1.00449 0.97744 0.91652 1.20951 0.93566 1.02940 0.99843 1.21139 0.96509 0.97964 0.97022 1.20286 0.98809 1.04341 0.92812 1.18566 0.95898 1.00894 0.87721 1.21745 0.95372 0.84369 0.97211 0.94482 0.97007 0.97843 0.91064 0.89658 0.92191 0.90728 0.75035 0.87255 0.86525 0.89584 0.87859 0.78836 0.82138 0.84758 0.84073 0.83895 0.85720 0.93271 0.96344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.30 10.31 21.65 0.22 -57.08 16 2 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 3 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.24 -13.29 10.28 84.03 0.86 -12.43 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -31.48 3.40 -692.02 -2.35 -33.83 16 10 C 0.18 8.83 5.38 86.73 0.47 9.29 16 11 C -0.12 -4.20 6.42 31.78 0.20 -3.99 16 12 C -0.10 -2.82 3.10 -9.41 -0.03 -2.85 16 13 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 14 C 0.14 3.52 5.12 86.38 0.44 3.96 16 15 N -0.72 -14.43 5.41 -463.07 -2.50 -16.93 16 16 C 0.52 10.70 7.83 87.66 0.69 11.38 16 17 O -0.58 -16.30 15.98 -3.02 -0.05 -16.35 16 18 C -0.15 -2.07 6.02 29.85 0.18 -1.89 16 19 C 0.13 2.02 5.29 86.38 0.46 2.47 16 20 N -0.49 -8.26 2.78 -515.94 -1.43 -9.69 16 21 C 0.05 0.76 11.27 83.00 0.94 1.70 16 22 C -0.22 -3.67 11.08 23.51 0.26 -3.41 16 23 C -0.14 -2.71 6.37 -20.20 -0.13 -2.84 16 24 C -0.09 -1.46 10.05 22.23 0.22 -1.24 16 25 C -0.15 -2.33 9.97 22.04 0.22 -2.11 16 26 C -0.11 -1.67 10.01 22.30 0.22 -1.45 16 27 C -0.14 -2.55 10.00 22.37 0.22 -2.32 16 28 C 0.07 1.49 6.81 39.03 0.27 1.76 16 29 C 0.14 5.13 6.41 86.85 0.56 5.68 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 31 H 0.01 0.64 7.38 -2.39 -0.02 0.62 16 32 H 0.00 0.18 7.50 -2.39 -0.02 0.17 16 33 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 35 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.41 6.83 8.34 -92.70 -0.77 6.05 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16 41 H 0.10 1.52 8.07 -2.39 -0.02 1.50 16 42 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 43 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.12 1.93 8.06 -2.91 -0.02 1.91 16 48 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 Total: -1.00 -73.82 402.52 2.60 -71.22 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.17 Total: 17.01 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 6.52 Total: -1.79 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -6.06 Total: -117.52 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.05 Total: -16.35 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -73.82 2.60 -71.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267305698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.778 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds