Wall clock time and date at job start Wed Apr 1 2020 00:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99798 * 3 2 1 5 5 H 1.48504 * 109.46757 * 29.99785 * 3 2 1 6 6 H 1.48492 * 109.47185 * 149.99581 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46851 * 110.99872 * 66.04706 * 13 12 10 15 15 C 1.53040 * 109.52400 * 174.16130 * 14 13 12 16 16 C 1.53121 * 109.27937 * 59.17623 * 15 14 13 17 17 C 1.53119 * 109.15914 * 302.34798 * 16 15 14 18 18 H 1.08997 * 109.50656 * 297.71073 * 17 16 15 19 19 N 1.46504 * 109.50378 * 177.63566 * 17 16 15 20 20 C 1.34773 * 120.00135 * 84.99558 * 19 17 16 21 21 O 1.21288 * 120.00092 * 0.02562 * 20 19 17 22 22 C 1.50699 * 120.00129 * 180.02562 * 20 19 17 23 23 F 1.39901 * 110.01244 * 54.30508 * 22 20 19 24 24 C 1.54262 * 110.03475 * 292.91026 * 22 20 19 25 25 C 1.54961 * 104.16029 * 217.13275 * 24 22 20 26 26 C 1.54885 * 102.77532 * 37.89155 * 25 24 22 27 27 C 1.53883 * 110.03348 * 175.69215 * 22 20 19 28 28 C 1.46844 * 111.00403 * 301.83852 * 13 12 10 29 29 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 31 31 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 32 32 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 33 33 H 1.08998 * 109.46194 * 294.17226 * 14 13 12 34 34 H 1.08994 * 109.46450 * 54.15620 * 14 13 12 35 35 H 1.08998 * 109.50574 * 179.12403 * 15 14 13 36 36 H 1.09001 * 109.50223 * 299.23832 * 15 14 13 37 37 H 1.08995 * 109.52571 * 62.25458 * 16 15 14 38 38 H 1.08998 * 109.52333 * 182.38137 * 16 15 14 39 39 H 0.96995 * 119.99878 * 265.00339 * 19 17 16 40 40 H 1.08993 * 110.48720 * 335.78519 * 24 22 20 41 41 H 1.09003 * 110.48114 * 98.42610 * 24 22 20 42 42 H 1.08992 * 110.72339 * 279.57606 * 25 24 22 43 43 H 1.09004 * 110.92017 * 156.29477 * 25 24 22 44 44 H 1.09007 * 110.48740 * 203.40181 * 26 25 24 45 45 H 1.09004 * 110.48953 * 80.76260 * 26 25 24 46 46 H 1.08995 * 110.03026 * 238.57525 * 27 22 20 47 47 H 1.09005 * 110.02921 * 0.02562 * 27 22 20 48 48 H 1.09001 * 109.45981 * 305.85324 * 28 13 12 49 49 H 1.09002 * 109.46484 * 65.81759 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1982 -5.9794 0.0248 14 6 2.9632 -6.0116 1.2779 15 6 3.8396 -7.2659 1.3100 16 6 4.7905 -7.2491 0.1100 17 6 3.9700 -7.1665 -1.1802 18 1 3.3402 -8.0517 -1.2683 19 7 4.8739 -7.0931 -2.3308 20 6 5.3697 -8.2237 -2.8716 21 8 5.0672 -9.3020 -2.4059 22 6 6.2999 -8.1481 -4.0548 23 9 7.3797 -7.3082 -3.7620 24 6 5.5412 -7.6222 -5.2907 25 6 6.1371 -8.4282 -6.4725 26 6 6.3415 -9.8355 -5.8588 27 6 6.8090 -9.5547 -4.4158 28 6 3.0899 -5.9152 -1.1401 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0068 31 1 0.6167 -4.9161 0.9093 32 1 0.6173 -4.9251 -0.8706 33 1 3.5949 -5.1256 1.3406 34 1 2.2752 -6.0278 2.1231 35 1 4.4188 -7.2815 2.2332 36 1 3.2077 -8.1527 1.2612 37 1 5.4489 -6.3832 0.1790 38 1 5.3874 -8.1610 0.1054 39 1 5.1156 -6.2308 -2.7034 40 1 4.4734 -7.8187 -5.1950 41 1 5.7234 -6.5559 -5.4249 42 1 7.0894 -8.0025 -6.7885 43 1 5.4377 -8.4689 -7.3077 44 1 7.1072 -10.3837 -6.4079 45 1 5.4031 -10.3900 -5.8547 46 1 7.8973 -9.5826 -4.3637 47 1 6.3828 -10.2920 -3.7354 48 1 2.4939 -5.8611 -2.0512 49 1 3.7210 -5.0295 -1.0661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267628304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:23 Heat of formation + Delta-G solvation = -128.906789 kcal Electronic energy + Delta-G solvation = -30862.816468 eV Core-core repulsion = 26545.378175 eV Total energy + Delta-G solvation = -4317.438293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.09515 -40.27871 -39.29563 -37.61835 -36.90076 -34.79761 -33.94084 -32.49207 -31.35452 -30.15898 -29.17976 -28.46078 -27.33153 -24.73855 -23.45964 -22.78304 -21.70453 -21.20979 -20.15796 -19.71775 -19.21813 -18.18778 -17.87630 -16.74017 -16.19025 -16.07627 -15.68655 -15.46375 -14.90562 -14.73307 -14.69044 -14.52674 -14.26229 -14.11450 -13.97658 -13.75794 -13.50138 -13.45080 -13.11662 -12.88996 -12.42673 -12.22257 -11.92438 -11.88274 -11.60215 -11.56478 -11.49743 -11.32355 -11.22000 -11.17899 -10.93529 -10.87713 -10.65830 -10.56704 -10.46502 -10.32687 -10.29553 -9.79518 -9.54075 -9.28580 -9.08905 -8.06956 -7.47970 -6.51897 -3.93532 2.29818 2.84348 3.09431 3.19834 3.25111 3.75030 3.86601 3.97385 4.08961 4.20958 4.29431 4.43974 4.82042 4.87675 4.91785 5.00766 5.02720 5.09036 5.11357 5.15480 5.21540 5.22430 5.37966 5.43640 5.53483 5.64506 5.67075 5.74182 5.76950 5.78848 5.87200 5.89834 5.94962 5.98318 6.10179 6.10661 6.16689 6.24220 6.33770 6.41358 6.52685 6.68191 7.26815 7.34962 7.39196 7.44844 7.94178 7.96622 8.48544 9.06171 9.42077 9.92121 10.64457 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.002601 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.513294 B =10760.870221 C =11953.476805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.554 5.554 10 C 0.405 3.595 11 O -0.595 6.595 12 C 0.042 3.958 13 N -0.509 5.509 14 C 0.039 3.961 15 C -0.108 4.108 16 C -0.127 4.127 17 C 0.150 3.850 18 H 0.091 0.909 19 N -0.709 5.709 20 C 0.505 3.495 21 O -0.525 6.525 22 C 0.100 3.900 23 F -0.192 7.192 24 C -0.143 4.143 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.143 4.143 28 C 0.028 3.972 29 H 0.273 0.727 30 H 0.393 0.607 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.404 0.596 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.103 0.897 48 H 0.067 0.933 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -16.342 -8.641 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.120 0.880 9 N -0.189 5.189 10 C 0.190 3.810 11 O -0.482 6.482 12 C -0.090 4.090 13 N -0.232 5.232 14 C -0.089 4.089 15 C -0.147 4.147 16 C -0.166 4.166 17 C 0.046 3.954 18 H 0.109 0.891 19 N -0.359 5.359 20 C 0.288 3.712 21 O -0.401 6.401 22 C 0.079 3.921 23 F -0.172 7.172 24 C -0.181 4.181 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.181 4.181 28 C -0.101 4.101 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.239 0.761 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.121 0.879 48 H 0.085 0.915 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.927 -17.360 -8.297 20.810 hybrid contribution 0.356 2.289 -0.043 2.317 sum 8.283 -15.071 -8.339 19.113 Atomic orbital electron populations 1.69611 1.05982 1.28379 1.49788 1.25297 0.95628 0.99864 0.96985 0.85864 0.79266 0.80753 0.78461 1.20322 1.20817 1.19410 1.19707 0.93371 0.82360 1.47867 0.87953 1.42067 1.09350 1.04945 1.62557 1.21090 0.88817 0.85960 0.85102 1.90381 1.13907 1.86825 1.57127 1.22044 0.95302 0.87965 1.03642 1.62333 1.17862 1.40520 1.02497 1.22282 0.96774 0.98413 0.91423 1.21485 0.97342 0.98574 0.97276 1.21913 0.98308 1.02009 0.94351 1.21015 0.90262 1.00100 0.84048 0.89084 1.46024 1.48072 1.08866 1.32953 1.20624 0.81746 0.84708 0.84081 1.90691 1.59749 1.28060 1.61625 1.21856 0.84155 0.91709 0.94402 1.92923 1.56626 1.73098 1.94592 1.23008 1.00623 1.01667 0.92782 1.22532 1.01418 0.95058 0.97085 1.22356 1.01908 0.97213 0.94487 1.22751 1.02282 0.94371 0.98664 1.22564 0.96135 0.97744 0.93629 0.91698 0.77338 0.89109 0.89246 0.91225 0.91474 0.91549 0.91538 0.91629 0.91975 0.76124 0.89318 0.89146 0.90772 0.90500 0.90784 0.90891 0.89840 0.87870 0.91494 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.72 13.05 55.50 0.72 -23.00 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 8 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 9 N -0.55 -13.36 5.29 -10.96 -0.06 -13.42 16 10 C 0.40 8.83 7.20 -10.98 -0.08 8.75 16 11 O -0.59 -14.42 11.20 5.55 0.06 -14.35 16 12 C 0.04 0.72 5.86 -4.98 -0.03 0.69 16 13 N -0.51 -8.17 4.86 -236.12 -1.15 -9.32 16 14 C 0.04 0.62 5.09 -3.83 -0.02 0.60 16 15 C -0.11 -1.47 6.09 -26.65 -0.16 -1.64 16 16 C -0.13 -1.81 5.58 -26.61 -0.15 -1.96 16 17 C 0.15 2.13 2.61 -67.85 -0.18 1.96 16 18 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 19 N -0.71 -9.06 5.08 -53.73 -0.27 -9.34 16 20 C 0.51 6.61 6.67 -10.99 -0.07 6.53 16 21 O -0.53 -8.24 14.88 5.55 0.08 -8.15 16 22 C 0.10 1.07 1.48 -90.65 -0.13 0.94 16 23 F -0.19 -2.30 16.78 2.25 0.04 -2.26 16 24 C -0.14 -1.21 6.14 -25.04 -0.15 -1.37 16 25 C -0.12 -0.86 6.91 -24.70 -0.17 -1.03 16 26 C -0.12 -0.89 6.83 -25.08 -0.17 -1.06 16 27 C -0.14 -1.35 6.25 -25.61 -0.16 -1.51 16 28 C 0.03 0.44 4.45 -3.84 -0.02 0.42 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 31 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.33 6.00 -51.93 -0.31 1.02 16 34 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.40 4.72 8.60 -40.82 -0.35 4.37 16 40 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 41 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.73 8.02 -51.93 -0.42 0.32 16 47 H 0.10 1.13 6.40 -51.93 -0.33 0.79 16 48 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 49 H 0.09 1.73 5.36 -51.93 -0.28 1.45 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -29.93 387.17 -9.31 -39.24 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -7.81 Total: 15.73 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.74 Total: 3.59 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.75 Total: -55.07 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.14 Total: -22.51 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.93 -9.31 -39.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267628304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.667 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds