Wall clock time and date at job start Wed Apr 1 2020 00:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99798 * 3 2 1 5 5 H 1.48504 * 109.46757 * 29.99785 * 3 2 1 6 6 H 1.48492 * 109.47185 * 149.99581 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46851 * 110.99872 * 66.04706 * 13 12 10 15 15 C 1.53040 * 109.52400 * 174.16130 * 14 13 12 16 16 C 1.53121 * 109.27937 * 59.17623 * 15 14 13 17 17 C 1.53119 * 109.15914 * 302.34798 * 16 15 14 18 18 H 1.08997 * 109.50656 * 297.71073 * 17 16 15 19 19 N 1.46504 * 109.50378 * 177.63566 * 17 16 15 20 20 C 1.34773 * 120.00135 * 84.99558 * 19 17 16 21 21 O 1.21288 * 120.00092 * 0.02562 * 20 19 17 22 22 C 1.50699 * 120.00129 * 180.02562 * 20 19 17 23 23 F 1.39901 * 110.01244 * 54.30508 * 22 20 19 24 24 C 1.54262 * 110.03475 * 292.91026 * 22 20 19 25 25 C 1.54961 * 104.16029 * 217.13275 * 24 22 20 26 26 C 1.54885 * 102.77532 * 37.89155 * 25 24 22 27 27 C 1.53883 * 110.03348 * 175.69215 * 22 20 19 28 28 C 1.46844 * 111.00403 * 301.83852 * 13 12 10 29 29 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 31 31 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 32 32 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 33 33 H 1.08998 * 109.46194 * 294.17226 * 14 13 12 34 34 H 1.08994 * 109.46450 * 54.15620 * 14 13 12 35 35 H 1.08998 * 109.50574 * 179.12403 * 15 14 13 36 36 H 1.09001 * 109.50223 * 299.23832 * 15 14 13 37 37 H 1.08995 * 109.52571 * 62.25458 * 16 15 14 38 38 H 1.08998 * 109.52333 * 182.38137 * 16 15 14 39 39 H 0.96995 * 119.99878 * 265.00339 * 19 17 16 40 40 H 1.08993 * 110.48720 * 335.78519 * 24 22 20 41 41 H 1.09003 * 110.48114 * 98.42610 * 24 22 20 42 42 H 1.08992 * 110.72339 * 279.57606 * 25 24 22 43 43 H 1.09004 * 110.92017 * 156.29477 * 25 24 22 44 44 H 1.09007 * 110.48740 * 203.40181 * 26 25 24 45 45 H 1.09004 * 110.48953 * 80.76260 * 26 25 24 46 46 H 1.08995 * 110.03026 * 238.57525 * 27 22 20 47 47 H 1.09005 * 110.02921 * 0.02562 * 27 22 20 48 48 H 1.09001 * 109.45981 * 305.85324 * 28 13 12 49 49 H 1.09002 * 109.46484 * 65.81759 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1982 -5.9794 0.0248 14 6 2.9632 -6.0116 1.2779 15 6 3.8396 -7.2659 1.3100 16 6 4.7905 -7.2491 0.1100 17 6 3.9700 -7.1665 -1.1802 18 1 3.3402 -8.0517 -1.2683 19 7 4.8739 -7.0931 -2.3308 20 6 5.3697 -8.2237 -2.8716 21 8 5.0672 -9.3020 -2.4059 22 6 6.2999 -8.1481 -4.0548 23 9 7.3797 -7.3082 -3.7620 24 6 5.5412 -7.6222 -5.2907 25 6 6.1371 -8.4282 -6.4725 26 6 6.3415 -9.8355 -5.8588 27 6 6.8090 -9.5547 -4.4158 28 6 3.0899 -5.9152 -1.1401 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0068 31 1 0.6167 -4.9161 0.9093 32 1 0.6173 -4.9251 -0.8706 33 1 3.5949 -5.1256 1.3406 34 1 2.2752 -6.0278 2.1231 35 1 4.4188 -7.2815 2.2332 36 1 3.2077 -8.1527 1.2612 37 1 5.4489 -6.3832 0.1790 38 1 5.3874 -8.1610 0.1054 39 1 5.1156 -6.2308 -2.7034 40 1 4.4734 -7.8187 -5.1950 41 1 5.7234 -6.5559 -5.4249 42 1 7.0894 -8.0025 -6.7885 43 1 5.4377 -8.4689 -7.3077 44 1 7.1072 -10.3837 -6.4079 45 1 5.4031 -10.3900 -5.8547 46 1 7.8973 -9.5826 -4.3637 47 1 6.3828 -10.2920 -3.7354 48 1 2.4939 -5.8611 -2.0512 49 1 3.7210 -5.0295 -1.0661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267628304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:22 Heat of formation + Delta-G solvation = -149.453261 kcal Electronic energy + Delta-G solvation = -30863.707430 eV Core-core repulsion = 26545.378175 eV Total energy + Delta-G solvation = -4318.329254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.01170 -41.46982 -40.70458 -38.97157 -37.81025 -36.22506 -35.61674 -33.79381 -33.26318 -31.24706 -29.86459 -29.40747 -28.80837 -26.52761 -24.55309 -24.12118 -22.76165 -21.85123 -21.32365 -21.12045 -20.60238 -19.82511 -19.12749 -17.80868 -17.70519 -17.17365 -16.79977 -16.57140 -16.37893 -16.14365 -15.80772 -15.76300 -15.61391 -15.48237 -15.21406 -14.98801 -14.66084 -14.50246 -14.28770 -14.09919 -13.74625 -13.49176 -13.30914 -13.09572 -13.01598 -12.57585 -12.56554 -12.44710 -12.28629 -12.19785 -12.16704 -12.13481 -11.96033 -11.84547 -11.82247 -11.55514 -11.50265 -11.36200 -10.96410 -10.84397 -10.22991 -10.00167 -9.04176 -8.47356 -5.96965 1.24998 1.34841 1.40067 1.51782 1.80076 2.00322 2.27512 2.96412 3.11003 3.18977 3.23412 3.24958 3.39823 3.58615 3.77586 3.85398 4.01161 4.13599 4.18472 4.25362 4.35443 4.39011 4.40602 4.43220 4.49067 4.50544 4.63221 4.65870 4.69660 4.79072 4.89829 4.93320 4.96247 5.01854 5.06677 5.09338 5.13392 5.15295 5.17398 5.29255 5.36415 5.37967 5.43149 5.86990 6.02884 6.05056 6.27979 6.57464 6.90942 7.10565 7.54212 8.08446 8.67960 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.002601 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.513294 B =10760.870221 C =11953.476805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.569 5.569 10 C 0.408 3.592 11 O -0.619 6.619 12 C 0.050 3.950 13 N -0.501 5.501 14 C 0.040 3.960 15 C -0.101 4.101 16 C -0.123 4.123 17 C 0.159 3.841 18 H 0.086 0.914 19 N -0.706 5.706 20 C 0.504 3.496 21 O -0.553 6.553 22 C 0.099 3.901 23 F -0.200 7.200 24 C -0.142 4.142 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.144 4.144 28 C 0.035 3.965 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.409 0.591 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.597 -17.095 -9.583 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.205 5.205 10 C 0.195 3.805 11 O -0.507 6.507 12 C -0.082 4.082 13 N -0.223 5.223 14 C -0.088 4.088 15 C -0.139 4.139 16 C -0.162 4.162 17 C 0.055 3.945 18 H 0.104 0.896 19 N -0.356 5.356 20 C 0.288 3.712 21 O -0.431 6.431 22 C 0.077 3.923 23 F -0.181 7.181 24 C -0.180 4.180 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.182 4.182 28 C -0.093 4.093 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.245 0.755 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.775 -18.122 -9.248 21.780 hybrid contribution 0.448 2.435 0.277 2.492 sum 8.223 -15.687 -8.970 19.854 Atomic orbital electron populations 1.69670 1.06800 1.29289 1.50150 1.26006 0.96476 1.02376 0.96325 0.84981 0.77884 0.77188 0.78630 1.19634 1.19696 1.19914 1.19629 0.92623 0.84109 1.49708 0.90347 1.42134 1.09414 1.04976 1.64001 1.22098 0.88768 0.87008 0.82577 1.90398 1.15489 1.87538 1.57307 1.22151 0.95254 0.84986 1.05765 1.62424 1.17831 1.39352 1.02700 1.22283 0.96779 0.97975 0.91742 1.21459 0.97083 0.97755 0.97635 1.21870 0.98273 1.01254 0.94818 1.20827 0.90213 0.98854 0.84632 0.89566 1.46004 1.47746 1.09294 1.32578 1.21090 0.81643 0.84098 0.84352 1.90674 1.60858 1.28961 1.62579 1.22014 0.83679 0.92584 0.94009 1.92906 1.57014 1.73469 1.94697 1.23056 1.00389 1.02288 0.92284 1.22553 1.02030 0.94268 0.96746 1.22368 1.02436 0.97732 0.93005 1.22775 1.02537 0.92995 0.99874 1.22445 0.95861 0.97150 0.93880 0.91302 0.77009 0.86887 0.87051 0.94760 0.90135 0.89991 0.90376 0.93053 0.91960 0.75512 0.89312 0.88572 0.90177 0.88840 0.89019 0.90863 0.89290 0.89546 0.90770 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.46 13.05 21.66 0.28 -48.18 16 2 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 3 Si 0.99 42.01 29.55 68.60 2.03 44.03 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.33 -18.08 9.68 84.04 0.81 -17.27 16 8 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 9 N -0.57 -27.76 5.29 -306.98 -1.62 -29.38 16 10 C 0.41 17.92 7.20 87.66 0.63 18.55 16 11 O -0.62 -30.77 11.20 -3.07 -0.03 -30.81 16 12 C 0.05 1.62 5.86 85.56 0.50 2.13 16 13 N -0.50 -15.48 4.86 -900.96 -4.38 -19.86 16 14 C 0.04 1.24 5.09 86.33 0.44 1.68 16 15 C -0.10 -2.63 6.09 30.65 0.19 -2.44 16 16 C -0.12 -3.48 5.58 30.67 0.17 -3.31 16 17 C 0.16 4.48 2.61 45.04 0.12 4.60 16 18 H 0.09 2.57 7.58 -2.39 -0.02 2.55 16 19 N -0.71 -18.00 5.08 -442.29 -2.25 -20.25 16 20 C 0.50 13.07 6.67 87.66 0.58 13.65 16 21 O -0.55 -17.31 14.88 -3.05 -0.05 -17.35 16 22 C 0.10 2.04 1.48 -10.81 -0.02 2.02 16 23 F -0.20 -4.70 16.78 44.97 0.75 -3.95 16 24 C -0.14 -2.22 6.14 31.69 0.19 -2.02 16 25 C -0.12 -1.38 6.91 31.91 0.22 -1.16 16 26 C -0.12 -1.49 6.83 31.67 0.22 -1.27 16 27 C -0.14 -2.60 6.25 31.32 0.20 -2.41 16 28 C 0.04 1.10 4.45 86.32 0.38 1.48 16 29 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 30 H 0.40 18.52 7.90 -92.71 -0.73 17.79 16 31 H 0.11 3.23 8.06 -2.39 -0.02 3.21 16 32 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.03 1.32 6.00 -2.39 -0.01 1.31 16 34 H 0.08 2.26 8.06 -2.39 -0.02 2.24 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.41 9.61 8.60 -92.71 -0.80 8.82 16 40 H 0.09 1.38 7.85 -2.39 -0.02 1.37 16 41 H 0.10 1.38 8.11 -2.39 -0.02 1.36 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.09 1.48 8.02 -2.39 -0.02 1.46 16 47 H 0.09 1.88 6.40 -2.38 -0.02 1.86 16 48 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 49 H 0.06 2.36 5.36 -2.39 -0.01 2.35 16 Total: -1.00 -65.12 387.17 -0.70 -65.82 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: -0.55 Total: 45.83 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 5.11 Total: 14.09 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -7.96 Total: -117.67 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.08 Total: -48.16 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.75 Total: -3.95 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -65.12 -0.70 -65.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267628304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.632 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds