Wall clock time and date at job start Wed Apr 1 2020 00:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48500 * 109.47419 * 240.00474 * 3 2 1 5 5 H 1.48502 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47312 * 120.00192 * 3 2 1 7 7 C 1.38816 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99866 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00486 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47776 * 172.91785 * 10 9 7 12 12 H 1.09008 * 109.87041 * 46.00856 * 11 10 9 13 13 C 1.54323 * 109.88844 * 167.17948 * 11 10 9 14 14 C 1.55442 * 102.96966 * 141.61182 * 13 11 10 15 15 C 1.54909 * 101.45401 * 324.52110 * 14 13 11 16 16 N 1.47022 * 109.88557 * 284.99729 * 11 10 9 17 17 C 1.34771 * 125.65362 * 61.65299 * 16 11 10 18 18 O 1.21559 * 119.99718 * 355.36078 * 17 16 11 19 19 C 1.47860 * 120.00428 * 175.36286 * 17 16 11 20 20 C 1.39619 * 120.10210 * 23.60478 * 19 17 16 21 21 C 1.37991 * 119.99955 * 179.76519 * 20 19 17 22 22 C 1.38251 * 120.22670 * 0.51567 * 21 20 19 23 23 C 1.38983 * 120.21917 * 359.73934 * 22 21 20 24 24 N 1.39708 * 120.00301 * 180.02562 * 23 22 21 25 25 C 1.48222 * 111.00240 * 119.87481 * 24 23 22 26 26 C 1.51120 * 105.36043 * 144.89773 * 25 24 23 27 27 C 1.30955 * 109.45780 * 343.02488 * 26 25 24 28 28 C 1.48224 * 110.99890 * 233.51354 * 24 23 22 29 29 C 1.38679 * 119.99196 * 359.97438 * 23 22 21 30 30 H 0.97002 * 119.99346 * 359.97438 * 1 2 3 31 31 H 0.97009 * 119.99804 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46903 * 52.91939 * 10 9 7 33 33 H 1.08997 * 109.47160 * 292.92368 * 10 9 7 34 34 H 1.08993 * 110.72162 * 259.98117 * 13 11 10 35 35 H 1.08999 * 110.71314 * 23.24953 * 13 11 10 36 36 H 1.09006 * 111.11504 * 206.46845 * 14 13 11 37 37 H 1.09005 * 111.01260 * 82.53037 * 14 13 11 38 38 H 1.08999 * 110.36466 * 278.11320 * 15 14 13 39 39 H 1.08992 * 110.37008 * 155.89734 * 15 14 13 40 40 H 1.07994 * 120.00398 * 0.02804 * 20 19 17 41 41 H 1.07997 * 119.88553 * 180.25136 * 21 20 19 42 42 H 1.07999 * 119.88820 * 179.72139 * 22 21 20 43 43 H 1.09000 * 110.26917 * 263.87159 * 25 24 23 44 44 H 1.09001 * 110.26739 * 25.92947 * 25 24 23 45 45 H 1.08000 * 125.27111 * 163.04777 * 26 25 24 46 46 H 1.08001 * 125.27311 * 179.97438 * 27 26 25 47 47 H 1.09004 * 110.26693 * 334.07379 * 28 24 23 48 48 H 1.09009 * 110.26585 * 96.12599 * 28 24 23 49 49 H 1.08000 * 120.11092 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0734 -4.8143 0.1764 12 1 0.2161 -4.6762 -0.4825 13 6 1.7733 -6.1525 -0.1414 14 6 1.1811 -7.1175 0.9235 15 6 1.0328 -6.1752 2.1440 16 7 0.6241 -4.8780 1.5748 17 6 -0.0500 -3.9110 2.2282 18 8 -0.2621 -2.8446 1.6846 19 6 -0.5315 -4.1472 3.6061 20 6 0.0883 -5.1060 4.4098 21 6 -0.3598 -5.3212 5.6971 22 6 -1.4287 -4.5976 6.1921 23 6 -2.0559 -3.6447 5.3983 24 7 -3.1355 -2.9157 5.9033 25 6 -2.8413 -1.4629 5.9047 26 6 -4.1570 -0.7878 5.5935 27 6 -4.9867 -1.6632 5.0836 28 6 -4.3088 -3.0114 5.0027 29 6 -1.6094 -3.4168 4.1053 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 2.7768 -3.6621 0.8176 33 1 2.5855 -3.7710 -0.9486 34 1 1.5237 -6.4888 -1.1477 35 1 2.8528 -6.0611 -0.0209 36 1 1.8708 -7.9331 1.1411 37 1 0.2116 -7.5019 0.6066 38 1 1.9849 -6.0774 2.6657 39 1 0.2663 -6.5503 2.8220 40 1 0.9210 -5.6762 4.0255 41 1 0.1236 -6.0605 6.3185 42 1 -1.7778 -4.7737 7.1988 43 1 -2.4797 -1.1518 6.8848 44 1 -2.1046 -1.2261 5.1370 45 1 -4.3785 0.2553 5.7648 46 1 -5.9987 -1.4542 4.7698 47 1 -3.9854 -3.2108 3.9810 48 1 -4.9848 -3.7951 5.3453 49 1 -2.0956 -2.6770 3.4867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267964915.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:57 Heat of formation + Delta-G solvation = 89.466292 kcal Electronic energy + Delta-G solvation = -30459.210843 eV Core-core repulsion = 26582.011142 eV Total energy + Delta-G solvation = -3877.199700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74481 -39.80826 -37.91150 -36.79122 -34.28122 -33.05571 -31.66511 -31.16256 -30.65099 -29.02345 -28.47860 -28.22273 -25.17100 -24.15865 -23.48741 -22.56673 -21.49492 -20.92759 -20.82937 -19.46235 -18.93167 -17.58173 -16.85102 -16.41074 -16.20498 -15.94059 -15.65519 -14.78215 -14.53412 -14.37028 -14.00643 -13.89046 -13.70903 -13.51628 -13.31089 -12.98150 -12.92638 -12.88039 -12.76011 -12.41790 -12.32025 -11.97080 -11.86304 -11.64144 -11.46528 -11.38402 -11.34755 -11.11239 -10.74688 -10.66341 -10.58909 -10.46217 -9.96211 -9.78254 -9.50380 -8.99383 -8.85673 -8.67364 -8.63656 -8.45193 -8.12097 -6.54903 -5.44943 -2.71501 1.02800 1.24307 2.09573 3.21088 3.31524 3.56359 3.59914 3.61226 3.76989 3.95003 4.53765 4.57302 4.60101 4.75317 4.78935 4.87146 4.95020 4.98536 5.07733 5.27516 5.29452 5.36032 5.38523 5.43104 5.47303 5.48765 5.55640 5.58262 5.64878 5.74833 5.79531 5.81558 5.86489 5.90312 6.00754 6.08844 6.24336 6.26121 6.29381 6.31493 6.34834 6.38854 6.50373 6.65508 6.70851 6.73462 6.85666 7.04217 7.25584 7.89244 7.98593 8.66214 8.88078 9.85402 10.51496 10.91051 11.76034 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007757 B = 0.004666 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3608.582526 B = 6000.038418 C = 8784.958080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.896 3.104 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.235 4.235 8 H 0.060 0.940 9 N -0.718 5.718 10 C 0.146 3.854 11 C 0.131 3.869 12 H 0.073 0.927 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.090 3.910 16 N -0.612 5.612 17 C 0.544 3.456 18 O -0.447 6.447 19 C -0.100 4.100 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.078 4.078 23 C 0.065 3.935 24 N -0.467 5.467 25 C 0.050 3.950 26 C -0.162 4.162 27 C -0.171 4.171 28 C 0.052 3.948 29 C -0.092 4.092 30 H 0.248 0.752 31 H 0.399 0.601 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.143 0.857 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 -16.552 11.863 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.728 3.272 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.367 4.367 8 H 0.078 0.922 9 N -0.369 5.369 10 C 0.016 3.984 11 C 0.028 3.972 12 H 0.091 0.909 13 C -0.163 4.163 14 C -0.172 4.172 15 C -0.033 4.033 16 N -0.350 5.350 17 C 0.330 3.670 18 O -0.316 6.316 19 C -0.104 4.104 20 C -0.130 4.130 21 C -0.143 4.143 22 C -0.097 4.097 23 C -0.029 4.029 24 N -0.188 5.188 25 C -0.075 4.075 26 C -0.180 4.180 27 C -0.190 4.190 28 C -0.074 4.074 29 C -0.112 4.112 30 H 0.058 0.942 31 H 0.241 0.759 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.418 -15.937 12.152 20.761 hybrid contribution 0.528 1.350 -0.699 1.610 sum -4.890 -14.586 11.453 19.179 Atomic orbital electron populations 1.69738 1.04743 1.24558 1.57458 1.24654 0.95339 0.96986 1.03671 0.86442 0.78568 0.84626 0.77567 1.21591 1.21895 1.21731 1.19088 0.90414 0.84757 1.42433 0.92247 1.42823 1.07029 0.98779 1.88292 1.20968 0.93229 0.86771 0.97391 1.21894 0.97631 0.95495 0.82179 0.90874 1.22680 1.00630 0.93624 0.99319 1.22855 1.01693 0.97329 0.95350 1.22672 0.99730 0.84244 0.96630 1.48298 1.57256 1.16464 1.12946 1.18059 0.79638 0.83800 0.85485 1.91027 1.52794 1.21733 1.66026 1.19936 0.97577 0.97942 0.94954 1.22068 1.00070 0.96759 0.94151 1.21033 0.97270 1.00454 0.95512 1.21063 0.94838 0.94235 0.99593 1.18926 0.94478 0.97382 0.92145 1.63337 1.03233 1.07013 1.45226 1.22263 0.96574 0.85981 1.02710 1.23557 0.94884 0.99662 0.99944 1.23512 0.99850 0.94898 1.00698 1.22232 0.92012 0.97134 0.95975 1.21780 0.95736 0.98077 0.95651 0.94181 0.75947 0.96471 0.96582 0.90184 0.90366 0.90109 0.90729 0.91514 0.90041 0.83933 0.85329 0.85245 0.89256 0.91045 0.84447 0.84506 0.91495 0.89385 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.96 13.06 55.49 0.72 -29.23 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 24.04 29.55 -169.99 -5.02 19.02 16 4 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 5 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 7 C -0.24 -7.19 9.99 -15.06 -0.15 -7.34 16 8 H 0.06 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.72 -20.09 4.10 -59.92 -0.25 -20.33 16 10 C 0.15 3.19 5.62 -4.05 -0.02 3.16 16 11 C 0.13 2.26 3.09 -66.96 -0.21 2.05 16 12 H 0.07 1.38 8.12 -51.92 -0.42 0.96 16 13 C -0.12 -1.47 6.46 -24.74 -0.16 -1.63 16 14 C -0.13 -1.26 7.11 -24.43 -0.17 -1.43 16 15 C 0.09 1.02 5.01 -2.53 -0.01 1.01 16 16 N -0.61 -10.18 3.07 -164.11 -0.50 -10.68 16 17 C 0.54 10.85 7.50 -12.32 -0.09 10.75 16 18 O -0.45 -11.47 12.70 5.31 0.07 -11.40 16 19 C -0.10 -1.65 5.76 -104.99 -0.61 -2.25 16 20 C -0.11 -1.42 7.99 -39.16 -0.31 -1.73 16 21 C -0.12 -1.33 10.02 -39.67 -0.40 -1.73 16 22 C -0.08 -0.92 9.96 -39.30 -0.39 -1.31 16 23 C 0.06 0.90 4.91 -83.83 -0.41 0.49 16 24 N -0.47 -6.13 5.58 -171.20 -0.96 -7.08 16 25 C 0.05 0.66 6.47 -4.04 -0.03 0.64 16 26 C -0.16 -1.91 10.95 -35.81 -0.39 -2.30 16 27 C -0.17 -1.93 10.95 -35.81 -0.39 -2.33 16 28 C 0.05 0.64 6.44 -4.04 -0.03 0.61 16 29 C -0.09 -1.50 7.23 -38.97 -0.28 -1.78 16 30 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 31 H 0.40 11.93 5.03 -40.82 -0.21 11.72 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.69 7.43 -51.93 -0.39 0.31 16 39 H 0.08 0.81 5.84 -51.93 -0.30 0.50 16 40 H 0.14 1.53 4.18 -52.49 -0.22 1.31 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.11 6.74 -51.93 -0.35 0.76 16 45 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 46 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16 48 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 49 H 0.13 2.48 6.80 -52.49 -0.36 2.13 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -37.25 383.94 -11.47 -48.72 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.17 Total: 10.74 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -4.15 Total: -5.53 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.98 Total: -67.33 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.02 Total: 19.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.25 -11.47 -48.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267964915.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.186 kcal (2) G-P(sol) polarization free energy of solvation -37.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds