Wall clock time and date at job start Wed Apr 1 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48500 * 109.47419 * 240.00474 * 3 2 1 5 5 H 1.48502 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47312 * 120.00192 * 3 2 1 7 7 C 1.38816 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99866 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00486 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47776 * 172.91785 * 10 9 7 12 12 H 1.09008 * 109.87041 * 46.00856 * 11 10 9 13 13 C 1.54323 * 109.88844 * 167.17948 * 11 10 9 14 14 C 1.55442 * 102.96966 * 141.61182 * 13 11 10 15 15 C 1.54909 * 101.45401 * 324.52110 * 14 13 11 16 16 N 1.47022 * 109.88557 * 284.99729 * 11 10 9 17 17 C 1.34771 * 125.65362 * 61.65299 * 16 11 10 18 18 O 1.21559 * 119.99718 * 355.36078 * 17 16 11 19 19 C 1.47860 * 120.00428 * 175.36286 * 17 16 11 20 20 C 1.39619 * 120.10210 * 23.60478 * 19 17 16 21 21 C 1.37991 * 119.99955 * 179.76519 * 20 19 17 22 22 C 1.38251 * 120.22670 * 0.51567 * 21 20 19 23 23 C 1.38983 * 120.21917 * 359.73934 * 22 21 20 24 24 N 1.39708 * 120.00301 * 180.02562 * 23 22 21 25 25 C 1.48222 * 111.00240 * 119.87481 * 24 23 22 26 26 C 1.51120 * 105.36043 * 144.89773 * 25 24 23 27 27 C 1.30955 * 109.45780 * 343.02488 * 26 25 24 28 28 C 1.48224 * 110.99890 * 233.51354 * 24 23 22 29 29 C 1.38679 * 119.99196 * 359.97438 * 23 22 21 30 30 H 0.97002 * 119.99346 * 359.97438 * 1 2 3 31 31 H 0.97009 * 119.99804 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46903 * 52.91939 * 10 9 7 33 33 H 1.08997 * 109.47160 * 292.92368 * 10 9 7 34 34 H 1.08993 * 110.72162 * 259.98117 * 13 11 10 35 35 H 1.08999 * 110.71314 * 23.24953 * 13 11 10 36 36 H 1.09006 * 111.11504 * 206.46845 * 14 13 11 37 37 H 1.09005 * 111.01260 * 82.53037 * 14 13 11 38 38 H 1.08999 * 110.36466 * 278.11320 * 15 14 13 39 39 H 1.08992 * 110.37008 * 155.89734 * 15 14 13 40 40 H 1.07994 * 120.00398 * 0.02804 * 20 19 17 41 41 H 1.07997 * 119.88553 * 180.25136 * 21 20 19 42 42 H 1.07999 * 119.88820 * 179.72139 * 22 21 20 43 43 H 1.09000 * 110.26917 * 263.87159 * 25 24 23 44 44 H 1.09001 * 110.26739 * 25.92947 * 25 24 23 45 45 H 1.08000 * 125.27111 * 163.04777 * 26 25 24 46 46 H 1.08001 * 125.27311 * 179.97438 * 27 26 25 47 47 H 1.09004 * 110.26693 * 334.07379 * 28 24 23 48 48 H 1.09009 * 110.26585 * 96.12599 * 28 24 23 49 49 H 1.08000 * 120.11092 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0734 -4.8143 0.1764 12 1 0.2161 -4.6762 -0.4825 13 6 1.7733 -6.1525 -0.1414 14 6 1.1811 -7.1175 0.9235 15 6 1.0328 -6.1752 2.1440 16 7 0.6241 -4.8780 1.5748 17 6 -0.0500 -3.9110 2.2282 18 8 -0.2621 -2.8446 1.6846 19 6 -0.5315 -4.1472 3.6061 20 6 0.0883 -5.1060 4.4098 21 6 -0.3598 -5.3212 5.6971 22 6 -1.4287 -4.5976 6.1921 23 6 -2.0559 -3.6447 5.3983 24 7 -3.1355 -2.9157 5.9033 25 6 -2.8413 -1.4629 5.9047 26 6 -4.1570 -0.7878 5.5935 27 6 -4.9867 -1.6632 5.0836 28 6 -4.3088 -3.0114 5.0027 29 6 -1.6094 -3.4168 4.1053 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 2.7768 -3.6621 0.8176 33 1 2.5855 -3.7710 -0.9486 34 1 1.5237 -6.4888 -1.1477 35 1 2.8528 -6.0611 -0.0209 36 1 1.8708 -7.9331 1.1411 37 1 0.2116 -7.5019 0.6066 38 1 1.9849 -6.0774 2.6657 39 1 0.2663 -6.5503 2.8220 40 1 0.9210 -5.6762 4.0255 41 1 0.1236 -6.0605 6.3185 42 1 -1.7778 -4.7737 7.1988 43 1 -2.4797 -1.1518 6.8848 44 1 -2.1046 -1.2261 5.1370 45 1 -4.3785 0.2553 5.7648 46 1 -5.9987 -1.4542 4.7698 47 1 -3.9854 -3.2108 3.9810 48 1 -4.9848 -3.7951 5.3453 49 1 -2.0956 -2.6770 3.4867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267964915.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:56 Heat of formation + Delta-G solvation = 63.739597 kcal Electronic energy + Delta-G solvation = -30460.326436 eV Core-core repulsion = 26582.011142 eV Total energy + Delta-G solvation = -3878.315294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87449 -41.01952 -38.99213 -38.18500 -36.25874 -34.21618 -33.28608 -32.64697 -31.77071 -30.52342 -29.49795 -29.40361 -26.80007 -25.60046 -24.65219 -24.15190 -22.81640 -22.05275 -21.86770 -20.41380 -20.29739 -19.25243 -18.43677 -17.66523 -17.33137 -17.06664 -16.91204 -16.59501 -15.97538 -15.65073 -15.28233 -15.15436 -14.98688 -14.83864 -14.75837 -14.56424 -14.20059 -13.99991 -13.86836 -13.68197 -13.31584 -13.29682 -13.16200 -13.01784 -12.86086 -12.80057 -12.64393 -12.43840 -12.33500 -12.32277 -12.01458 -11.63325 -11.62830 -11.50359 -10.92336 -10.85479 -10.51670 -10.00614 -9.73440 -9.52924 -9.51436 -8.80405 -7.82663 -5.09836 -0.08697 0.18546 1.14914 1.37084 1.42741 1.48412 1.94811 2.03442 2.56204 2.74465 2.76881 3.43815 3.48086 3.58956 3.64609 3.78156 3.82574 3.87912 3.99336 4.05222 4.21384 4.25390 4.29294 4.37855 4.38764 4.42756 4.45148 4.48787 4.56316 4.61766 4.66301 4.76792 4.79522 4.85990 4.89382 4.90239 5.00923 5.14260 5.17291 5.26161 5.26940 5.32454 5.34370 5.35582 5.40192 5.44993 5.59482 5.73224 5.79485 6.18735 6.33875 6.64797 7.31476 7.49667 8.32730 8.58369 9.39060 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007757 B = 0.004666 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3608.582526 B = 6000.038418 C = 8784.958080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.077 4.077 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.734 5.734 10 C 0.143 3.857 11 C 0.130 3.870 12 H 0.045 0.955 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.079 3.921 16 N -0.611 5.611 17 C 0.532 3.468 18 O -0.525 6.525 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.104 4.104 22 C -0.070 4.070 23 C 0.057 3.943 24 N -0.461 5.461 25 C 0.047 3.953 26 C -0.175 4.175 27 C -0.169 4.169 28 C 0.047 3.953 29 C -0.112 4.112 30 H 0.242 0.758 31 H 0.386 0.614 32 H 0.010 0.990 33 H 0.025 0.975 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.159 0.841 43 H 0.102 0.898 44 H 0.035 0.965 45 H 0.157 0.843 46 H 0.162 0.838 47 H 0.045 0.955 48 H 0.108 0.892 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 -19.993 14.214 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.270 4.270 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.210 1.210 7 C -0.377 4.377 8 H 0.082 0.918 9 N -0.383 5.383 10 C 0.015 3.985 11 C 0.026 3.974 12 H 0.063 0.937 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.042 4.042 16 N -0.346 5.346 17 C 0.320 3.680 18 O -0.400 6.400 19 C -0.130 4.130 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.088 4.088 23 C -0.037 4.037 24 N -0.181 5.181 25 C -0.079 4.079 26 C -0.194 4.194 27 C -0.187 4.187 28 C -0.079 4.079 29 C -0.133 4.133 30 H 0.050 0.950 31 H 0.226 0.774 32 H 0.028 0.972 33 H 0.042 0.958 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.185 0.815 41 H 0.196 0.804 42 H 0.176 0.824 43 H 0.120 0.880 44 H 0.053 0.947 45 H 0.174 0.826 46 H 0.180 0.820 47 H 0.063 0.937 48 H 0.126 0.874 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.945 -19.477 14.506 24.603 hybrid contribution 0.111 2.303 -1.405 2.700 sum -3.834 -17.173 13.102 21.938 Atomic orbital electron populations 1.69974 1.06548 1.24808 1.59175 1.25555 0.96298 1.00799 1.04337 0.85298 0.77209 0.79701 0.78061 1.19942 1.22134 1.21049 1.19533 0.90772 0.86235 1.41202 0.91846 1.43083 1.06840 1.00249 1.88169 1.21177 0.93936 0.86313 0.97081 1.21883 0.95964 0.96901 0.82628 0.93727 1.22680 1.00689 0.90599 1.01254 1.22886 1.02871 0.97073 0.92742 1.23102 1.01095 0.81861 0.98150 1.48426 1.55696 1.17740 1.12725 1.18788 0.79015 0.83386 0.86773 1.90976 1.56041 1.24978 1.67991 1.19826 0.98846 1.00428 0.93944 1.22333 1.00000 0.95345 0.94504 1.21547 0.95976 1.00030 0.94673 1.21471 0.94365 0.92707 1.00285 1.19121 0.94996 0.98263 0.91334 1.63473 1.03237 1.06628 1.44801 1.22276 0.96762 0.86706 1.02150 1.23753 0.94141 1.00725 1.00747 1.23799 1.00885 0.94191 0.99857 1.22323 0.92189 0.98502 0.94858 1.21558 0.96814 0.98238 0.96696 0.94978 0.77409 0.97187 0.95765 0.88542 0.89259 0.86007 0.90179 0.89563 0.88052 0.81483 0.80401 0.82387 0.87988 0.94669 0.82589 0.82027 0.93732 0.87367 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -66.38 13.06 21.65 0.28 -66.09 16 2 C -0.08 -5.03 5.50 84.86 0.47 -4.57 16 3 Si 0.97 51.45 29.55 68.60 2.03 53.48 16 4 H -0.27 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 7 C -0.24 -15.66 9.99 84.03 0.84 -14.83 16 8 H 0.06 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.73 -43.62 4.10 -343.47 -1.41 -45.03 16 10 C 0.14 6.48 5.62 86.38 0.49 6.97 16 11 C 0.13 4.59 3.09 45.34 0.14 4.73 16 12 H 0.04 1.81 8.12 -2.38 -0.02 1.79 16 13 C -0.11 -2.41 6.46 31.88 0.21 -2.20 16 14 C -0.12 -1.71 7.11 32.09 0.23 -1.48 16 15 C 0.08 1.54 5.01 86.85 0.43 1.97 16 16 N -0.61 -20.62 3.07 -791.40 -2.43 -23.05 16 17 C 0.53 22.76 7.50 86.79 0.65 23.41 16 18 O -0.52 -29.83 12.70 -3.90 -0.05 -29.88 16 19 C -0.13 -4.35 5.76 -20.11 -0.12 -4.47 16 20 C -0.10 -2.39 7.99 22.54 0.18 -2.21 16 21 C -0.10 -1.79 10.02 22.21 0.22 -1.57 16 22 C -0.07 -1.44 9.96 22.45 0.22 -1.21 16 23 C 0.06 1.61 4.91 38.17 0.19 1.80 16 24 N -0.46 -12.32 5.58 -695.56 -3.88 -16.20 16 25 C 0.05 1.32 6.47 85.43 0.55 1.87 16 26 C -0.18 -4.29 10.95 25.83 0.28 -4.01 16 27 C -0.17 -3.90 10.95 25.82 0.28 -3.62 16 28 C 0.05 1.20 6.44 85.43 0.55 1.75 16 29 C -0.11 -4.00 7.23 22.67 0.16 -3.84 16 30 H 0.24 16.28 8.31 -92.71 -0.77 15.51 16 31 H 0.39 25.06 5.03 -92.70 -0.47 24.59 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.02 1.07 8.09 -2.39 -0.02 1.05 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.73 7.85 -2.39 -0.02 1.72 16 36 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.09 1.42 7.43 -2.39 -0.02 1.40 16 39 H 0.10 1.62 5.84 -2.39 -0.01 1.61 16 40 H 0.17 2.92 4.18 -2.91 -0.01 2.91 16 41 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.04 1.24 6.74 -2.39 -0.02 1.22 16 45 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 46 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 47 H 0.04 1.34 6.30 -2.38 -0.02 1.33 16 48 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 49 H 0.09 3.94 6.80 -2.91 -0.02 3.92 16 Total: -1.00 -91.61 383.94 1.02 -90.59 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: 0.50 Total: 37.67 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.98 Total: -1.49 kcal Atomic # 7 Polarization: -142.94 SS G_CDS: -7.43 Total: -150.37 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.05 Total: -29.88 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.03 Total: 53.48 kcal Total: -91.61 1.02 -90.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267964915.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.327 kcal (2) G-P(sol) polarization free energy of solvation -91.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds