Wall clock time and date at job start Wed Apr 1 2020 00:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00202 * 2 1 4 4 H 1.48501 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46988 * 299.99602 * 3 2 1 6 6 H 1.48501 * 109.47119 * 59.99606 * 3 2 1 7 7 C 1.38808 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00728 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99779 * 186.23308 * 9 7 2 11 11 C 1.53000 * 110.06107 * 57.74635 * 10 9 7 12 12 N 1.46500 * 109.46996 * 56.32563 * 11 10 9 13 13 C 1.34776 * 119.99624 * 175.58853 * 12 11 10 14 14 O 1.21282 * 120.00236 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99866 * 180.02562 * 13 12 11 16 16 C 1.50697 * 109.47070 * 180.02562 * 15 13 12 17 17 C 1.34230 * 126.50566 * 264.68838 * 16 15 13 18 18 N 1.36830 * 109.93540 * 179.83577 * 17 16 15 19 19 H 0.97003 * 125.07092 * 180.18272 * 18 17 16 20 20 C 1.37693 * 109.87262 * 0.44277 * 18 17 16 21 21 C 1.39123 * 133.51189 * 179.71352 * 20 18 17 22 22 C 1.37749 * 119.77808 * 180.02562 * 21 20 18 23 23 C 1.38823 * 120.66940 * 0.02562 * 22 21 20 24 24 C 1.36632 * 120.53029 * 0.02562 * 23 22 21 25 25 C 1.39631 * 119.75897 * 359.97438 * 24 23 22 26 26 C 1.53885 * 110.03206 * 179.16181 * 10 9 7 27 27 C 1.54262 * 106.59792 * 119.28297 * 26 10 9 28 28 C 1.54889 * 104.20010 * 336.38876 * 27 26 10 29 29 C 1.54264 * 110.03139 * 296.32291 * 10 9 7 30 30 H 0.97000 * 119.99408 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00134 * 6.22655 * 9 7 2 32 32 H 1.08998 * 109.47193 * 176.33368 * 11 10 9 33 33 H 1.09000 * 109.46507 * 296.32859 * 11 10 9 34 34 H 0.96998 * 120.00351 * 355.59862 * 12 11 10 35 35 H 1.08997 * 109.46760 * 299.99770 * 15 13 12 36 36 H 1.09000 * 109.47263 * 59.99963 * 15 13 12 37 37 H 1.08001 * 125.03258 * 359.97226 * 17 16 15 38 38 H 1.08005 * 120.10856 * 0.05587 * 21 20 18 39 39 H 1.08007 * 119.65971 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.74062 * 180.02562 * 23 22 21 41 41 H 1.07993 * 120.12098 * 179.97438 * 24 23 22 42 42 H 1.08998 * 110.02985 * 238.57003 * 26 10 9 43 43 H 1.09003 * 110.02801 * 0.02562 * 26 10 9 44 44 H 1.08992 * 110.48801 * 95.07357 * 27 26 10 45 45 H 1.09008 * 110.48303 * 217.71652 * 27 26 10 46 46 H 1.09006 * 110.75842 * 279.63316 * 28 27 26 47 47 H 1.08999 * 110.75812 * 156.25765 * 28 27 26 48 48 H 1.08998 * 110.48711 * 23.01285 * 29 10 9 49 49 H 1.09006 * 110.48522 * 145.65221 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0514 -3.6530 0.1389 11 6 2.8590 -3.6552 1.4384 12 7 1.9631 -3.4065 2.5705 13 6 2.4403 -3.4520 3.8301 14 8 3.6115 -3.6985 4.0264 15 6 1.5186 -3.1967 4.9947 16 6 2.2941 -3.3054 6.2823 17 6 2.3935 -4.3911 7.0653 18 7 3.1840 -4.1150 8.1475 19 1 3.4043 -4.7445 8.8519 20 6 3.6156 -2.8087 8.0907 21 6 4.4173 -2.0280 8.9174 22 6 4.6738 -0.7169 8.5817 23 6 4.1397 -0.1644 7.4256 24 6 3.3490 -0.9126 6.5999 25 6 3.0760 -2.2439 6.9208 26 6 1.0625 -4.8319 0.1309 27 6 1.4355 -5.7118 -1.0800 28 6 2.1737 -4.7452 -2.0391 29 6 2.9908 -3.8577 -1.0675 30 1 -0.4849 0.8401 -0.0004 31 1 0.3599 -2.3905 -0.0909 32 1 3.3428 -4.6239 1.5638 33 1 3.6171 -2.8732 1.3963 34 1 1.0264 -3.2091 2.4135 35 1 1.0945 -2.1962 4.9098 36 1 0.7153 -3.9334 4.9907 37 1 1.9215 -5.3425 6.8690 38 1 4.8375 -2.4487 9.8190 39 1 5.2968 -0.1126 9.2247 40 1 4.3509 0.8651 7.1767 41 1 2.9366 -0.4760 5.7024 42 1 1.1579 -5.4055 1.0528 43 1 0.0424 -4.4628 0.0236 44 1 2.0957 -6.5229 -0.7732 45 1 0.5377 -6.1082 -1.5546 46 1 1.4620 -4.1442 -2.6052 47 1 2.8349 -5.2953 -2.7086 48 1 3.2283 -2.9011 -1.5328 49 1 3.9024 -4.3695 -0.7587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268055724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:37 Heat of formation + Delta-G solvation = 21.701124 kcal Electronic energy + Delta-G solvation = -29692.149159 eV Core-core repulsion = 25812.010941 eV Total energy + Delta-G solvation = -3880.138219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21172 -39.24621 -38.01218 -36.80757 -33.98761 -33.22315 -32.93339 -30.71399 -30.09008 -29.20957 -28.25721 -28.02083 -26.69383 -24.25670 -23.10744 -22.77428 -21.69425 -20.65211 -19.91443 -19.17230 -18.49408 -17.74490 -16.97652 -16.53157 -16.32096 -15.70800 -15.43942 -14.95031 -14.71040 -14.65304 -14.32361 -14.00216 -13.95708 -13.69845 -13.31408 -13.20431 -13.01631 -12.64126 -12.52626 -12.45339 -12.02469 -11.65278 -11.59209 -11.43893 -11.22696 -11.07979 -10.78341 -10.71794 -10.70575 -10.61272 -10.48153 -10.22128 -10.12339 -9.83346 -9.64568 -9.61849 -9.20826 -8.88639 -8.28426 -8.12711 -7.56425 -6.99839 -5.80278 -3.09150 1.21815 1.72804 2.69980 3.14717 3.25567 3.42253 3.50339 3.51226 3.90838 4.11100 4.58069 4.78355 4.84332 5.00456 5.12355 5.14625 5.17949 5.25452 5.28444 5.34334 5.53331 5.58730 5.61888 5.71500 5.72878 5.77294 5.81250 5.92607 5.96419 5.98228 6.01294 6.10823 6.21159 6.23102 6.29270 6.33545 6.47683 6.54872 6.59579 6.65731 6.70740 6.78055 6.79119 6.85341 6.87317 7.04445 7.21535 7.24213 7.55582 7.73090 8.23648 8.38840 8.89146 9.50699 10.04553 10.40153 11.41794 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.003431 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.506724 B = 8157.772955 C =10126.384294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.711 5.711 10 C 0.189 3.811 11 C 0.122 3.878 12 N -0.704 5.704 13 C 0.508 3.492 14 O -0.549 6.549 15 C -0.068 4.068 16 C -0.139 4.139 17 C 0.054 3.946 18 N -0.597 5.597 19 H 0.413 0.587 20 C 0.095 3.905 21 C -0.136 4.136 22 C -0.101 4.101 23 C -0.151 4.151 24 C -0.062 4.062 25 C -0.089 4.089 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.117 4.117 29 C -0.133 4.133 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.403 0.597 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.167 0.833 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.078 0.922 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.438 -10.483 13.093 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.353 5.353 10 C 0.097 3.903 11 C -0.004 4.004 12 N -0.354 5.354 13 C 0.294 3.706 14 O -0.427 6.427 15 C -0.109 4.109 16 C -0.147 4.147 17 C -0.071 4.071 18 N -0.200 5.200 19 H 0.249 0.751 20 C -0.012 4.012 21 C -0.157 4.157 22 C -0.121 4.121 23 C -0.170 4.170 24 C -0.081 4.081 25 C -0.094 4.094 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.155 4.155 29 C -0.173 4.173 30 H 0.063 0.937 31 H 0.219 0.781 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.238 0.762 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.184 0.816 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.391 -10.615 13.309 17.359 hybrid contribution -0.121 0.855 0.145 0.875 sum 3.270 -9.761 13.454 16.940 Atomic orbital electron populations 1.69659 1.04980 1.25470 1.57841 1.24667 0.95390 0.97433 1.02900 0.86234 0.79047 0.84534 0.77129 1.20581 1.22011 1.21905 1.19138 0.91046 0.83823 1.42203 0.91240 1.42570 1.06191 0.99579 1.86968 1.20456 0.91287 0.87127 0.91400 1.21791 0.93021 0.99380 0.86180 1.45786 1.13936 1.70629 1.05058 1.20499 0.88835 0.77254 0.84059 1.90660 1.17543 1.49058 1.85450 1.19958 0.96974 1.04552 0.89424 1.19613 1.04792 0.93069 0.97190 1.21471 0.97747 0.99212 0.88683 1.41608 1.44793 1.10351 1.23231 0.75084 1.18222 1.00298 0.84975 0.97695 1.19943 1.01734 0.94174 0.99866 1.20752 0.99901 0.94168 0.97230 1.20619 1.00414 1.00163 0.95782 1.20371 0.96863 0.92023 0.98806 1.19020 1.01012 0.94177 0.95178 1.22418 0.99782 0.96286 0.97762 1.22307 0.99537 0.97633 0.96403 1.22387 0.98734 0.97096 0.97246 1.22838 0.97362 1.00136 0.96943 0.93654 0.78143 0.93078 0.92063 0.76164 0.88145 0.88637 0.81557 0.86643 0.86076 0.86164 0.86012 0.92055 0.91345 0.92348 0.92412 0.91426 0.92786 0.90360 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.35 13.07 55.49 0.73 -25.63 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.23 -5.90 8.39 -15.06 -0.13 -6.03 16 8 H 0.07 1.81 7.23 -52.49 -0.38 1.43 16 9 N -0.71 -15.76 4.64 -46.20 -0.21 -15.97 16 10 C 0.19 3.41 0.68 -130.70 -0.09 3.32 16 11 C 0.12 2.28 3.98 -4.04 -0.02 2.27 16 12 N -0.70 -12.33 5.09 -60.29 -0.31 -12.64 16 13 C 0.51 8.98 7.82 -10.99 -0.09 8.90 16 14 O -0.55 -11.71 16.03 5.56 0.09 -11.62 16 15 C -0.07 -0.96 6.23 -29.04 -0.18 -1.14 16 16 C -0.14 -2.03 4.81 -102.71 -0.49 -2.52 16 17 C 0.05 0.64 11.73 -16.73 -0.20 0.45 16 18 N -0.60 -6.59 6.07 -10.65 -0.06 -6.66 16 19 H 0.41 3.05 8.96 -40.82 -0.37 2.68 16 20 C 0.09 1.30 7.28 -83.98 -0.61 0.68 16 21 C -0.14 -1.63 10.08 -39.43 -0.40 -2.03 16 22 C -0.10 -1.21 10.01 -39.54 -0.40 -1.60 16 23 C -0.15 -2.02 9.97 -39.95 -0.40 -2.42 16 24 C -0.06 -0.96 10.05 -39.64 -0.40 -1.36 16 25 C -0.09 -1.40 6.35 -105.13 -0.67 -2.07 16 26 C -0.12 -1.89 5.92 -25.61 -0.15 -2.04 16 27 C -0.12 -1.64 6.83 -25.07 -0.17 -1.81 16 28 C -0.12 -1.75 6.91 -24.74 -0.17 -1.92 16 29 C -0.13 -2.29 5.95 -25.07 -0.15 -2.44 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.38 9.10 7.28 -40.82 -0.30 8.80 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.32 7.46 -51.93 -0.39 0.94 16 34 H 0.40 6.86 8.00 -40.82 -0.33 6.53 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 39 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 41 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 42 H 0.06 0.87 7.54 -51.93 -0.39 0.48 16 43 H 0.07 1.07 7.44 -51.93 -0.39 0.69 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.54 7.16 -51.93 -0.37 1.17 16 49 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -32.35 398.81 -11.10 -43.46 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -7.52 Total: 18.14 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -4.80 Total: -12.08 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.14 Total: -60.90 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.35 -11.10 -43.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268055724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.158 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds