Wall clock time and date at job start Wed Apr 1 2020 00:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00398 * 2 1 4 4 H 1.48492 * 109.47548 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46959 * 300.00026 * 3 2 1 6 6 H 1.48505 * 109.46991 * 59.99297 * 3 2 1 7 7 C 1.38954 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99904 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00022 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99879 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99657 * 179.97438 * 10 9 7 13 13 N 1.46909 * 109.46929 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00297 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47287 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.46791 * 294.99676 * 15 14 13 17 17 N 1.46493 * 109.47230 * 54.99930 * 15 14 13 18 18 C 1.34780 * 120.00134 * 205.00537 * 17 15 14 19 19 O 1.21278 * 119.99543 * 359.97438 * 18 17 15 20 20 C 1.50702 * 120.00381 * 180.02562 * 18 17 15 21 21 F 1.39896 * 110.01762 * 58.59928 * 20 18 17 22 22 C 1.54268 * 110.02940 * 297.16246 * 20 18 17 23 23 C 1.54890 * 104.19354 * 217.10754 * 22 20 18 24 24 C 1.54887 * 102.75167 * 37.93975 * 23 22 20 25 25 C 1.53868 * 110.03301 * 179.97438 * 20 18 17 26 26 C 1.52996 * 109.47138 * 175.00151 * 15 14 13 27 27 C 1.53000 * 117.49997 * 179.97438 * 26 15 14 28 28 C 1.53002 * 60.02940 * 252.49592 * 27 26 15 29 29 H 0.96999 * 119.99878 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00168 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47676 * 60.00065 * 12 10 9 32 32 H 1.09001 * 109.47503 * 299.99080 * 12 10 9 33 33 H 1.00897 * 110.99433 * 56.04362 * 13 12 10 34 34 H 1.08995 * 109.47047 * 59.99621 * 14 13 12 35 35 H 1.09005 * 109.47104 * 300.00140 * 14 13 12 36 36 H 0.97001 * 120.00313 * 24.99457 * 17 15 14 37 37 H 1.09007 * 110.48643 * 335.78503 * 22 20 18 38 38 H 1.09001 * 110.48850 * 98.42006 * 22 20 18 39 39 H 1.08994 * 110.75222 * 279.62302 * 23 22 20 40 40 H 1.08999 * 110.91353 * 156.33176 * 23 22 20 41 41 H 1.08995 * 110.48529 * 203.37696 * 24 23 22 42 42 H 1.09000 * 110.48559 * 80.73607 * 24 23 22 43 43 H 1.08997 * 110.03626 * 238.56511 * 25 20 18 44 44 H 1.09001 * 110.03554 * 0.02562 * 25 20 18 45 45 H 1.09007 * 115.55004 * 325.66667 * 26 15 14 46 46 H 1.09002 * 117.49833 * 359.97438 * 27 26 15 47 47 H 1.09002 * 117.49953 * 144.99738 * 27 26 15 48 48 H 1.09000 * 117.49996 * 107.50493 * 28 27 26 49 49 H 1.08999 * 117.49664 * 252.51862 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0022 13 7 2.1982 -5.9796 0.0027 14 6 1.4979 -7.2709 0.0039 15 6 2.5227 -8.4069 0.0050 16 1 3.0886 -8.3866 -0.9264 17 7 3.4380 -8.2377 1.1362 18 6 4.6770 -8.7657 1.0854 19 8 5.0340 -9.3812 0.1033 20 6 5.6184 -8.5922 2.2494 21 9 5.0513 -9.1321 3.4086 22 6 5.9288 -7.0957 2.4594 23 6 7.4210 -7.0719 2.8741 24 6 8.0402 -8.1801 1.9868 25 6 6.9606 -9.2821 1.9491 26 6 1.7974 -9.7480 0.1319 27 6 2.6542 -11.0155 0.1512 28 6 1.8147 -10.6790 -1.0829 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3907 0.0005 31 1 0.6172 -4.9213 -0.8880 32 1 0.6166 -4.9201 0.8920 33 1 2.8330 -5.9121 0.7840 34 1 0.8727 -7.3460 -0.8858 35 1 0.8732 -7.3447 0.8941 36 1 3.1524 -7.7456 1.9218 37 1 5.7817 -6.5418 1.5321 38 1 5.3054 -6.6846 3.2534 39 1 7.5321 -7.3159 3.9306 40 1 7.8708 -6.1039 2.6534 41 1 8.9577 -8.5602 2.4359 42 1 8.2341 -7.8014 0.9832 43 1 7.1705 -10.0367 2.7071 44 1 6.9313 -9.7420 0.9613 45 1 0.8973 -9.7393 0.7466 46 1 3.7346 -10.8939 0.0730 47 1 2.3179 -11.8408 0.7789 48 1 2.3428 -10.3362 -1.9727 49 1 0.9260 -11.2828 -1.2669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269084050.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:29 Heat of formation + Delta-G solvation = -104.056382 kcal Electronic energy + Delta-G solvation = -30591.920442 eV Core-core repulsion = 26275.559744 eV Total energy + Delta-G solvation = -4316.360698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.08205 -40.39281 -38.44519 -37.94531 -36.77007 -35.72024 -34.11471 -33.64027 -31.26997 -30.11614 -29.06012 -28.51751 -26.33070 -24.20737 -23.01349 -22.37127 -22.06648 -21.14898 -20.52237 -20.03987 -19.29814 -18.26798 -17.88093 -16.87688 -16.33132 -16.21159 -15.80971 -15.54159 -15.34131 -15.03920 -14.87525 -14.49797 -14.32726 -14.30993 -13.92549 -13.68648 -13.50032 -13.39885 -13.19342 -12.63701 -12.26075 -12.02144 -11.96929 -11.82888 -11.77457 -11.54085 -11.49805 -11.45030 -11.40150 -11.37682 -11.08919 -11.07691 -10.79412 -10.48735 -10.37174 -10.34868 -10.25149 -9.79565 -9.55353 -9.20000 -8.52174 -8.14834 -7.99796 -6.45148 -3.85991 2.26818 2.75020 3.13916 3.24893 3.31883 3.69780 3.86233 3.93864 3.97498 4.08378 4.20917 4.28242 4.45092 4.67299 4.76511 4.91078 4.93362 4.99199 5.01606 5.03271 5.15611 5.19397 5.20054 5.21391 5.34098 5.35447 5.55540 5.56848 5.59519 5.67686 5.68811 5.76711 5.81676 5.85701 5.87395 5.91563 5.97386 6.04521 6.06774 6.15671 6.21067 6.32098 7.07695 7.21587 7.52204 7.52827 7.91721 8.02786 8.57322 9.14496 9.50480 10.01508 10.72603 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.002790 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.056648 B =10034.659529 C =12028.061775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.666 5.666 14 C 0.054 3.946 15 C 0.178 3.822 16 H 0.101 0.899 17 N -0.707 5.707 18 C 0.513 3.487 19 O -0.520 6.520 20 C 0.101 3.899 21 F -0.194 7.194 22 C -0.145 4.145 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.142 4.142 26 C -0.171 4.171 27 C -0.182 4.182 28 C -0.168 4.168 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.346 0.654 34 H 0.090 0.910 35 H 0.034 0.966 36 H 0.400 0.600 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.116 0.884 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 -19.986 5.166 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.299 5.299 14 C -0.076 4.076 15 C 0.073 3.927 16 H 0.119 0.881 17 N -0.357 5.357 18 C 0.297 3.703 19 O -0.396 6.396 20 C 0.079 3.921 21 F -0.174 7.174 22 C -0.183 4.183 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.180 4.180 26 C -0.191 4.191 27 C -0.218 4.218 28 C -0.205 4.205 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.166 0.834 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.235 0.765 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.134 0.866 47 H 0.105 0.895 48 H 0.115 0.885 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.505 -20.247 3.795 21.602 hybrid contribution -1.071 1.049 1.447 2.084 sum 5.434 -19.198 5.242 20.629 Atomic orbital electron populations 1.69616 1.05954 1.28098 1.50581 1.25266 0.95633 0.99747 0.97282 0.85804 0.79727 0.81118 0.77730 1.19196 1.20714 1.20760 1.19751 0.93394 0.82195 1.47535 0.87858 1.41867 1.09206 1.04609 1.64254 1.19776 0.88391 0.84687 0.84625 1.90522 1.13707 1.87034 1.55438 1.21700 0.94298 0.90915 1.01378 1.60024 1.18819 0.99734 1.51350 1.22241 0.94994 0.88592 1.01789 1.20654 0.89772 0.91783 0.90465 0.88117 1.45953 1.13487 1.55728 1.20530 1.20575 0.82366 0.78618 0.88727 1.90622 1.75345 1.40290 1.33375 1.21857 0.93299 0.96368 0.80545 1.92905 1.86601 1.87580 1.50324 1.23042 0.98739 0.92155 1.04392 1.22504 0.93925 0.99713 0.99912 1.22371 0.97698 0.95193 1.00768 1.22749 0.91055 0.98866 1.05295 1.22659 1.01710 0.91348 1.03386 1.23244 1.00286 0.97479 1.00838 1.22932 1.02319 1.02628 0.92642 0.91894 0.77465 0.89391 0.93790 0.83385 0.89129 0.94824 0.76508 0.88577 0.89291 0.90959 0.90266 0.90866 0.90769 0.89968 0.87915 0.87773 0.86619 0.89543 0.88502 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 10 C 0.44 10.08 7.82 -10.99 -0.09 9.99 16 11 O -0.58 -15.38 15.78 5.55 0.09 -15.29 16 12 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 13 N -0.67 -10.10 6.12 -115.05 -0.70 -10.80 16 14 C 0.05 0.61 5.28 -3.83 -0.02 0.59 16 15 C 0.18 2.00 2.58 -67.94 -0.18 1.82 16 16 H 0.10 1.37 7.34 -51.93 -0.38 0.99 16 17 N -0.71 -7.83 4.28 -53.81 -0.23 -8.06 16 18 C 0.51 6.33 6.07 -10.98 -0.07 6.27 16 19 O -0.52 -7.57 12.23 5.56 0.07 -7.50 16 20 C 0.10 1.09 1.48 -90.66 -0.13 0.96 16 21 F -0.19 -2.22 16.78 2.25 0.04 -2.18 16 22 C -0.15 -1.49 6.10 -25.07 -0.15 -1.64 16 23 C -0.12 -1.09 6.91 -24.74 -0.17 -1.26 16 24 C -0.12 -1.06 6.83 -25.05 -0.17 -1.23 16 25 C -0.14 -1.40 6.25 -25.59 -0.16 -1.56 16 26 C -0.17 -1.71 5.36 -90.59 -0.49 -2.20 16 27 C -0.18 -1.94 9.73 -26.73 -0.26 -2.20 16 28 C -0.17 -1.61 10.18 -26.69 -0.27 -1.89 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.35 5.34 7.28 -39.29 -0.29 5.06 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.40 3.93 8.15 -40.82 -0.33 3.59 16 37 H 0.10 1.12 7.85 -51.92 -0.41 0.71 16 38 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.74 8.02 -51.93 -0.42 0.32 16 44 H 0.10 1.14 6.39 -51.93 -0.33 0.81 16 45 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 46 H 0.12 1.49 5.02 -51.93 -0.26 1.22 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -31.42 399.44 -9.24 -40.66 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -7.74 Total: 18.29 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.43 Total: 0.58 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.27 Total: -56.35 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.16 Total: -22.79 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.42 -9.24 -40.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269084050.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.393 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds