Wall clock time and date at job start Wed Apr 1 2020 01:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53938 * 113.74184 * 278.73847 * 9 7 2 11 11 N 1.47813 * 86.03931 * 222.08648 * 10 9 7 12 12 C 1.34770 * 134.45830 * 204.64432 * 11 10 9 13 13 O 1.21522 * 119.99963 * 179.86191 * 12 11 10 14 14 C 1.48169 * 120.00302 * 359.86962 * 12 11 10 15 15 C 1.39318 * 119.76998 * 179.72358 * 14 12 11 16 16 C 1.38437 * 118.82456 * 179.86891 * 15 14 12 17 17 C 1.38974 * 118.80830 * 0.46994 * 16 15 14 18 18 C 1.38198 * 119.37848 * 359.57601 * 17 16 15 19 19 N 1.32109 * 120.39726 * 0.30381 * 18 17 16 20 20 C 1.50844 * 121.36269 * 180.61408 * 18 17 16 21 21 C 1.52863 * 109.96048 * 342.72860 * 20 18 17 22 22 N 1.47157 * 108.59413 * 50.65068 * 21 20 18 23 23 C 1.46900 * 110.99810 * 165.27646 * 22 21 20 24 24 C 1.52997 * 109.47402 * 56.91188 * 23 22 21 25 25 C 1.52999 * 117.49914 * 243.62479 * 24 23 22 26 26 C 1.52998 * 117.50195 * 175.00018 * 24 23 22 27 27 C 1.46658 * 110.22469 * 288.67751 * 22 21 20 28 28 C 1.47586 * 91.04834 * 24.55241 * 11 10 9 29 29 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 30 30 H 1.09000 * 112.94525 * 50.33174 * 9 7 2 31 31 H 1.09002 * 113.76959 * 336.35006 * 10 9 7 32 32 H 1.08998 * 113.76918 * 107.75067 * 10 9 7 33 33 H 1.07995 * 120.58684 * 0.11347 * 15 14 12 34 34 H 1.08004 * 120.59478 * 180.20152 * 16 15 14 35 35 H 1.09006 * 109.38739 * 102.88134 * 20 18 17 36 36 H 1.09003 * 109.38340 * 222.57535 * 20 18 17 37 37 H 1.08995 * 109.62046 * 290.91639 * 21 20 18 38 38 H 1.09006 * 109.61310 * 170.37905 * 21 20 18 39 39 H 1.08996 * 109.47000 * 176.91471 * 23 22 21 40 40 H 1.09002 * 109.47016 * 296.90980 * 23 22 21 41 41 H 1.09004 * 115.54668 * 29.32571 * 24 23 22 42 42 H 1.09000 * 117.49979 * 359.97438 * 25 24 23 43 43 H 1.09000 * 117.49866 * 145.01627 * 25 24 23 44 44 H 1.09002 * 117.50137 * 214.97860 * 26 24 23 45 45 H 1.09000 * 117.49742 * 359.97438 * 26 24 23 46 46 H 1.08992 * 109.30589 * 292.15211 * 27 22 21 47 47 H 1.09004 * 109.13883 * 172.65474 * 27 22 21 48 48 H 1.09008 * 113.76654 * 221.15420 * 28 11 10 49 49 H 1.08991 * 113.77014 * 89.75468 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7552 -2.9298 1.3906 11 7 1.1912 -4.2905 1.0121 12 6 0.8417 -5.5344 1.3952 13 8 1.3851 -6.4994 0.8950 14 6 -0.2054 -5.7254 2.4261 15 6 -0.5670 -7.0136 2.8143 16 6 -1.5456 -7.1694 3.7810 17 6 -2.1388 -6.0352 4.3222 18 6 -1.7333 -4.7865 3.8908 19 7 -0.7948 -4.6702 2.9683 20 6 -2.3370 -3.5257 4.4576 21 6 -3.6521 -3.8497 5.1663 22 7 -3.4195 -4.9616 6.1017 23 6 -4.5315 -5.0908 7.0529 24 6 -5.8407 -5.2803 6.2843 25 6 -6.9073 -4.1926 6.4267 26 6 -7.1061 -5.5518 7.1003 27 6 -3.2124 -6.2112 5.3624 28 6 2.1609 -3.7401 0.0451 29 1 -0.4849 0.8400 0.0004 30 1 0.4839 -2.5462 -0.7747 31 1 1.3259 -2.4984 2.2130 32 1 -0.3225 -2.8333 1.5223 33 1 -0.0896 -7.8753 2.3717 34 1 -1.8457 -8.1548 4.1057 35 1 -1.6423 -3.0802 5.1697 36 1 -2.5261 -2.8198 3.6488 37 1 -4.4021 -4.1410 4.4310 38 1 -3.9964 -2.9742 5.7170 39 1 -4.3603 -5.9532 7.6970 40 1 -4.5950 -4.1892 7.6621 41 1 -5.7505 -5.7734 5.3164 42 1 -6.6764 -3.3422 7.0683 43 1 -7.5189 -3.9699 5.5523 44 1 -7.8486 -6.2234 6.6692 45 1 -7.0058 -5.5960 8.1847 46 1 -4.1433 -6.4997 4.8744 47 1 -2.9135 -6.9938 6.0599 48 1 2.2033 -4.2895 -0.8954 49 1 3.1452 -3.5473 0.4715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277243072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:16 Heat of formation + Delta-G solvation = 68.811741 kcal Electronic energy + Delta-G solvation = -29354.302593 eV Core-core repulsion = 25476.207244 eV Total energy + Delta-G solvation = -3878.095349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86864 -39.40046 -38.57811 -36.96697 -36.34166 -33.44693 -32.63934 -32.30404 -30.17067 -29.22448 -27.43264 -25.41962 -24.95945 -24.61042 -23.62063 -22.94465 -22.69281 -21.62618 -20.49132 -19.50534 -18.53807 -17.12602 -16.90754 -16.53270 -16.31602 -15.79715 -15.50748 -15.11418 -14.92077 -14.64274 -14.45842 -14.36191 -14.26747 -13.89134 -13.55352 -13.24577 -12.92192 -12.83474 -12.39447 -12.27562 -12.19892 -12.04379 -11.93054 -11.70854 -11.54383 -11.44475 -11.24447 -11.14823 -10.87771 -10.77659 -10.74804 -10.35421 -10.31318 -9.88318 -9.74759 -9.37234 -9.20042 -8.83756 -8.79771 -8.55511 -8.48824 -7.76150 -6.11087 -4.16016 0.80718 1.29072 3.10353 3.27813 3.32491 3.34984 3.37796 3.53606 3.62330 4.08632 4.16159 4.26962 4.38831 4.46617 4.51290 4.57588 4.72456 4.75831 4.86596 4.96759 5.05391 5.12734 5.19752 5.20400 5.24932 5.27964 5.37136 5.42188 5.46914 5.50843 5.53863 5.71932 5.74464 5.81296 5.84264 5.95838 6.03296 6.19455 6.22563 6.31360 6.35001 6.43887 6.57305 6.69778 6.77098 6.79679 6.89146 7.08295 7.62877 7.86737 7.97518 8.24681 8.50660 8.78498 8.86229 9.49718 10.98544 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.002868 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.706600 B = 9761.611238 C =11879.433575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.028 3.972 10 C 0.126 3.874 11 N -0.616 5.616 12 C 0.573 3.427 13 O -0.564 6.564 14 C 0.102 3.898 15 C -0.123 4.123 16 C -0.082 4.082 17 C -0.120 4.120 18 C 0.142 3.858 19 N -0.444 5.444 20 C -0.066 4.066 21 C 0.056 3.944 22 N -0.527 5.527 23 C 0.085 3.915 24 C -0.195 4.195 25 C -0.175 4.175 26 C -0.176 4.176 27 C 0.097 3.903 28 C 0.102 3.898 29 H 0.263 0.737 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.054 0.946 47 H 0.090 0.910 48 H 0.062 0.938 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 -10.700 15.149 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.009 3.991 10 C 0.004 3.996 11 N -0.347 5.347 12 C 0.361 3.639 13 O -0.445 6.445 14 C -0.039 4.039 15 C -0.144 4.144 16 C -0.109 4.109 17 C -0.123 4.123 18 C 0.003 3.997 19 N -0.155 5.155 20 C -0.104 4.104 21 C -0.073 4.073 22 N -0.249 5.249 23 C -0.043 4.043 24 C -0.215 4.215 25 C -0.212 4.212 26 C -0.213 4.213 27 C -0.031 4.031 28 C -0.020 4.020 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.072 0.928 47 H 0.108 0.892 48 H 0.080 0.920 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.695 -10.302 14.921 22.134 hybrid contribution -0.630 -0.235 -0.136 0.686 sum -13.325 -10.537 14.785 22.521 Atomic orbital electron populations 1.69960 1.05975 1.26920 1.49299 1.25003 0.94853 0.99230 0.94437 0.86569 0.79907 0.83196 0.78184 1.20598 1.21184 1.19773 1.20953 0.92973 0.89701 1.51960 0.91950 1.20575 0.94035 0.91203 0.93300 1.23693 1.00441 0.74923 1.00548 1.50423 1.38881 1.05144 1.40229 1.17613 0.82262 0.82673 0.81383 1.90704 1.56606 1.39883 1.57320 1.21248 0.96436 0.89481 0.96708 1.22021 0.97139 0.98289 0.96974 1.21373 0.95303 0.98558 0.95634 1.20569 0.99072 0.93947 0.98682 1.21054 0.92600 0.94080 0.91943 1.67702 1.06861 1.33409 1.07518 1.20496 0.96057 0.93705 1.00146 1.22166 0.96257 0.94372 0.94458 1.62592 1.40429 1.04125 1.17795 1.21881 0.85489 1.02786 0.94123 1.23139 0.92021 1.04560 1.01796 1.23026 1.02436 0.92639 1.03143 1.22903 0.99523 0.99600 0.99305 1.20910 0.95532 0.92888 0.93811 1.23590 0.93933 0.93889 0.90552 0.92761 0.91993 0.91055 0.90525 0.83632 0.84448 0.88842 0.88607 0.93781 0.89574 0.90167 0.89982 0.87809 0.88565 0.88927 0.88993 0.88654 0.92798 0.89220 0.91959 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.29 13.29 55.43 0.74 -23.56 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.52 -13.45 8.77 -34.44 -0.30 -13.76 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.03 0.68 3.60 -90.84 -0.33 0.36 16 10 C 0.13 2.86 7.17 -2.84 -0.02 2.84 16 11 N -0.62 -13.65 3.61 -179.21 -0.65 -14.29 16 12 C 0.57 12.39 8.04 -12.18 -0.10 12.29 16 13 O -0.56 -13.12 17.06 5.35 0.09 -13.03 16 14 C 0.10 1.89 6.75 -83.11 -0.56 1.33 16 15 C -0.12 -1.86 9.64 -39.11 -0.38 -2.24 16 16 C -0.08 -0.99 9.78 -39.24 -0.38 -1.37 16 17 C -0.12 -1.49 5.81 -104.45 -0.61 -2.10 16 18 C 0.14 2.11 6.67 -82.42 -0.55 1.56 16 19 N -0.44 -8.04 7.76 -6.03 -0.05 -8.08 16 20 C -0.07 -0.83 6.18 -27.88 -0.17 -1.00 16 21 C 0.06 0.54 4.88 -3.75 -0.02 0.52 16 22 N -0.53 -4.87 4.90 -236.26 -1.16 -6.03 16 23 C 0.09 0.60 5.60 -3.83 -0.02 0.58 16 24 C -0.20 -1.32 4.36 -90.62 -0.40 -1.71 16 25 C -0.18 -1.12 10.18 -26.73 -0.27 -1.39 16 26 C -0.18 -1.03 10.25 -26.73 -0.27 -1.31 16 27 C 0.10 0.90 5.08 -5.20 -0.03 0.87 16 28 C 0.10 2.22 8.39 -2.96 -0.02 2.20 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 32 H 0.08 1.79 7.20 -51.93 -0.37 1.42 16 33 H 0.15 2.08 7.65 -52.49 -0.40 1.67 16 34 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.04 0.44 7.40 -51.93 -0.38 0.05 16 38 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 39 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 41 H 0.10 0.80 6.18 -51.93 -0.32 0.48 16 42 H 0.10 0.57 8.03 -51.93 -0.42 0.15 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.46 6.19 -51.93 -0.32 0.14 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 49 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -30.25 396.27 -12.26 -42.50 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.66 Total: 1.83 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -4.53 Total: -0.64 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -1.12 Total: -51.97 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.25 -12.26 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277243072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.315 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds