Wall clock time and date at job start Wed Apr 1 2020 01:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53938 * 113.74184 * 278.73847 * 9 7 2 11 11 N 1.47813 * 86.03931 * 222.08648 * 10 9 7 12 12 C 1.34770 * 134.45830 * 204.64432 * 11 10 9 13 13 O 1.21522 * 119.99963 * 179.86191 * 12 11 10 14 14 C 1.48169 * 120.00302 * 359.86962 * 12 11 10 15 15 C 1.39318 * 119.76998 * 179.72358 * 14 12 11 16 16 C 1.38437 * 118.82456 * 179.86891 * 15 14 12 17 17 C 1.38974 * 118.80830 * 0.46994 * 16 15 14 18 18 C 1.38198 * 119.37848 * 359.57601 * 17 16 15 19 19 N 1.32109 * 120.39726 * 0.30381 * 18 17 16 20 20 C 1.50844 * 121.36269 * 180.61408 * 18 17 16 21 21 C 1.52863 * 109.96048 * 342.72860 * 20 18 17 22 22 N 1.47157 * 108.59413 * 50.65068 * 21 20 18 23 23 C 1.46900 * 110.99810 * 165.27646 * 22 21 20 24 24 C 1.52997 * 109.47402 * 56.91188 * 23 22 21 25 25 C 1.52999 * 117.49914 * 243.62479 * 24 23 22 26 26 C 1.52998 * 117.50195 * 175.00018 * 24 23 22 27 27 C 1.46658 * 110.22469 * 288.67751 * 22 21 20 28 28 C 1.47586 * 91.04834 * 24.55241 * 11 10 9 29 29 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 30 30 H 1.09000 * 112.94525 * 50.33174 * 9 7 2 31 31 H 1.09002 * 113.76959 * 336.35006 * 10 9 7 32 32 H 1.08998 * 113.76918 * 107.75067 * 10 9 7 33 33 H 1.07995 * 120.58684 * 0.11347 * 15 14 12 34 34 H 1.08004 * 120.59478 * 180.20152 * 16 15 14 35 35 H 1.09006 * 109.38739 * 102.88134 * 20 18 17 36 36 H 1.09003 * 109.38340 * 222.57535 * 20 18 17 37 37 H 1.08995 * 109.62046 * 290.91639 * 21 20 18 38 38 H 1.09006 * 109.61310 * 170.37905 * 21 20 18 39 39 H 1.08996 * 109.47000 * 176.91471 * 23 22 21 40 40 H 1.09002 * 109.47016 * 296.90980 * 23 22 21 41 41 H 1.09004 * 115.54668 * 29.32571 * 24 23 22 42 42 H 1.09000 * 117.49979 * 359.97438 * 25 24 23 43 43 H 1.09000 * 117.49866 * 145.01627 * 25 24 23 44 44 H 1.09002 * 117.50137 * 214.97860 * 26 24 23 45 45 H 1.09000 * 117.49742 * 359.97438 * 26 24 23 46 46 H 1.08992 * 109.30589 * 292.15211 * 27 22 21 47 47 H 1.09004 * 109.13883 * 172.65474 * 27 22 21 48 48 H 1.09008 * 113.76654 * 221.15420 * 28 11 10 49 49 H 1.08991 * 113.77014 * 89.75468 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7552 -2.9298 1.3906 11 7 1.1912 -4.2905 1.0121 12 6 0.8417 -5.5344 1.3952 13 8 1.3851 -6.4994 0.8950 14 6 -0.2054 -5.7254 2.4261 15 6 -0.5670 -7.0136 2.8143 16 6 -1.5456 -7.1694 3.7810 17 6 -2.1388 -6.0352 4.3222 18 6 -1.7333 -4.7865 3.8908 19 7 -0.7948 -4.6702 2.9683 20 6 -2.3370 -3.5257 4.4576 21 6 -3.6521 -3.8497 5.1663 22 7 -3.4195 -4.9616 6.1017 23 6 -4.5315 -5.0908 7.0529 24 6 -5.8407 -5.2803 6.2843 25 6 -6.9073 -4.1926 6.4267 26 6 -7.1061 -5.5518 7.1003 27 6 -3.2124 -6.2112 5.3624 28 6 2.1609 -3.7401 0.0451 29 1 -0.4849 0.8400 0.0004 30 1 0.4839 -2.5462 -0.7747 31 1 1.3259 -2.4984 2.2130 32 1 -0.3225 -2.8333 1.5223 33 1 -0.0896 -7.8753 2.3717 34 1 -1.8457 -8.1548 4.1057 35 1 -1.6423 -3.0802 5.1697 36 1 -2.5261 -2.8198 3.6488 37 1 -4.4021 -4.1410 4.4310 38 1 -3.9964 -2.9742 5.7170 39 1 -4.3603 -5.9532 7.6970 40 1 -4.5950 -4.1892 7.6621 41 1 -5.7505 -5.7734 5.3164 42 1 -6.6764 -3.3422 7.0683 43 1 -7.5189 -3.9699 5.5523 44 1 -7.8486 -6.2234 6.6692 45 1 -7.0058 -5.5960 8.1847 46 1 -4.1433 -6.4997 4.8744 47 1 -2.9135 -6.9938 6.0599 48 1 2.2033 -4.2895 -0.8954 49 1 3.1452 -3.5473 0.4715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277243072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:15 Heat of formation + Delta-G solvation = 51.409923 kcal Electronic energy + Delta-G solvation = -29355.057193 eV Core-core repulsion = 25476.207244 eV Total energy + Delta-G solvation = -3878.849948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00944 -40.83349 -39.56764 -38.61848 -37.12424 -34.68227 -34.42622 -33.36379 -31.16639 -30.95257 -28.45740 -27.00993 -26.83124 -25.68825 -24.62472 -23.97220 -23.16195 -22.61573 -21.87076 -20.54786 -20.03150 -18.82766 -18.26181 -17.95780 -17.29162 -16.96665 -16.67130 -16.41410 -16.29123 -16.08962 -15.54949 -15.37511 -15.25621 -15.03088 -14.80900 -14.35062 -14.12029 -13.94698 -13.81154 -13.59717 -13.30872 -13.14568 -13.11600 -12.89190 -12.76928 -12.62738 -12.58531 -12.39757 -12.28950 -12.22585 -12.10693 -11.54958 -11.28232 -11.14758 -10.99315 -10.81113 -10.79700 -10.60928 -10.26380 -9.95451 -9.54954 -9.27361 -8.14007 -6.25598 -0.41585 0.20047 1.47605 1.48797 1.58808 1.63813 1.91085 2.46835 2.75424 2.79049 2.92416 3.00455 3.16183 3.48006 3.60398 3.74514 3.79049 3.92487 4.05121 4.10212 4.13711 4.25653 4.27207 4.31975 4.36752 4.42763 4.45444 4.51720 4.53658 4.62795 4.64573 4.76835 4.81993 4.82404 4.88241 4.89680 4.90166 4.93250 5.03001 5.06664 5.12868 5.14912 5.22603 5.28685 5.33749 5.55838 5.58846 5.82523 5.97505 6.09472 6.23310 6.70309 6.77338 6.81539 7.12311 7.43513 8.95958 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.002868 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.706600 B = 9761.611238 C =11879.433575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.021 3.979 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.021 3.979 10 C 0.147 3.853 11 N -0.624 5.624 12 C 0.569 3.431 13 O -0.587 6.587 14 C 0.062 3.938 15 C -0.121 4.121 16 C -0.069 4.069 17 C -0.105 4.105 18 C 0.122 3.878 19 N -0.476 5.476 20 C -0.065 4.065 21 C 0.066 3.934 22 N -0.537 5.537 23 C 0.089 3.911 24 C -0.197 4.197 25 C -0.183 4.183 26 C -0.168 4.168 27 C 0.098 3.902 28 C 0.108 3.892 29 H 0.264 0.736 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.151 0.849 34 H 0.186 0.814 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.070 0.930 47 H 0.116 0.884 48 H 0.068 0.932 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.614 -11.834 17.529 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.180 4.180 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.084 0.916 9 C 0.002 3.998 10 C 0.025 3.975 11 N -0.354 5.354 12 C 0.359 3.641 13 O -0.470 6.470 14 C -0.077 4.077 15 C -0.142 4.142 16 C -0.094 4.094 17 C -0.107 4.107 18 C -0.017 4.017 19 N -0.188 5.188 20 C -0.103 4.103 21 C -0.062 4.062 22 N -0.259 5.259 23 C -0.038 4.038 24 C -0.217 4.217 25 C -0.220 4.220 26 C -0.206 4.206 27 C -0.030 4.030 28 C -0.013 4.013 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.169 0.831 34 H 0.203 0.797 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.123 0.877 46 H 0.088 0.912 47 H 0.133 0.867 48 H 0.087 0.913 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.805 -11.450 17.303 24.922 hybrid contribution -0.380 0.057 -0.822 0.907 sum -14.185 -11.393 16.482 24.549 Atomic orbital electron populations 1.70078 1.07389 1.27765 1.50171 1.25773 0.95613 1.02533 0.94061 0.85536 0.78766 0.78999 0.78220 1.20208 1.20918 1.19017 1.21240 0.93306 0.90527 1.51832 0.91556 1.20464 0.94041 0.92077 0.93266 1.23293 0.99414 0.75463 0.99344 1.50399 1.39161 1.05330 1.40559 1.18174 0.82540 0.81826 0.81585 1.90662 1.57686 1.40180 1.58433 1.20924 0.97606 0.91233 0.97932 1.22172 0.97736 0.96822 0.97479 1.21842 0.93343 1.00541 0.93706 1.21007 0.98627 0.92943 0.98166 1.21493 0.92376 0.96103 0.91752 1.67542 1.08268 1.34053 1.08942 1.20514 0.97459 0.92694 0.99618 1.22047 0.94199 0.95430 0.94552 1.62580 1.41778 1.03814 1.17732 1.21912 0.84664 1.03657 0.93561 1.23052 0.92204 1.04807 1.01607 1.23075 1.02510 0.93143 1.03304 1.22966 0.98825 0.98967 0.99797 1.21040 0.94860 0.93578 0.93528 1.23496 0.93986 0.92704 0.91144 0.92678 0.94914 0.91577 0.91751 0.83081 0.79685 0.89374 0.90408 0.93896 0.88258 0.88823 0.89546 0.88572 0.88168 0.89411 0.88750 0.87659 0.91202 0.86652 0.91320 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.61 13.29 21.45 0.28 -51.33 16 2 C 0.02 1.10 5.46 84.66 0.46 1.56 16 3 Si 0.96 42.00 29.54 68.60 2.03 44.02 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.53 -28.17 8.77 25.60 0.22 -27.94 16 8 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 9 C 0.02 1.06 3.60 -10.88 -0.04 1.02 16 10 C 0.15 7.03 7.17 86.44 0.62 7.65 16 11 N -0.62 -28.76 3.61 -839.19 -3.03 -31.79 16 12 C 0.57 25.45 8.04 86.88 0.70 26.15 16 13 O -0.59 -27.95 17.06 -3.78 -0.06 -28.01 16 14 C 0.06 2.34 6.75 41.95 0.28 2.63 16 15 C -0.12 -3.54 9.64 22.58 0.22 -3.32 16 16 C -0.07 -1.44 9.78 22.49 0.22 -1.22 16 17 C -0.10 -2.35 5.81 -19.76 -0.11 -2.47 16 18 C 0.12 3.61 6.67 42.55 0.28 3.89 16 19 N -0.48 -17.81 7.76 -173.00 -1.34 -19.15 16 20 C -0.06 -1.64 6.18 29.85 0.18 -1.46 16 21 C 0.07 1.19 4.88 86.21 0.42 1.61 16 22 N -0.54 -8.38 4.90 -901.40 -4.42 -12.80 16 23 C 0.09 0.96 5.60 86.30 0.48 1.44 16 24 C -0.20 -2.10 4.36 -10.80 -0.05 -2.15 16 25 C -0.18 -1.97 10.18 30.59 0.31 -1.66 16 26 C -0.17 -1.51 10.25 30.59 0.31 -1.20 16 27 C 0.10 1.44 5.08 85.54 0.43 1.87 16 28 C 0.11 4.86 8.39 86.49 0.73 5.59 16 29 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 3.19 8.09 -2.39 -0.02 3.17 16 32 H 0.06 3.21 7.20 -2.39 -0.02 3.19 16 33 H 0.15 4.17 7.65 -2.91 -0.02 4.14 16 34 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.04 0.79 7.40 -2.39 -0.02 0.77 16 38 H 0.10 1.52 8.03 -2.38 -0.02 1.51 16 39 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16 40 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 41 H 0.10 1.20 6.18 -2.39 -0.01 1.19 16 42 H 0.10 0.99 8.03 -2.39 -0.02 0.97 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.89 6.19 -2.39 -0.01 0.88 16 47 H 0.12 1.21 8.14 -2.38 -0.02 1.20 16 48 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 49 H 0.09 3.70 8.09 -2.39 -0.02 3.68 16 Total: -1.00 -67.53 396.27 0.08 -67.45 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.95 Total: 19.60 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.68 Total: 12.01 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -8.51 Total: -115.06 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.06 Total: -28.01 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -67.53 0.08 -67.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277243072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.858 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds