Wall clock time and date at job start Wed Apr 1 2020 00:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48497 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46917 * 300.00321 * 3 2 1 6 6 H 1.48507 * 109.46729 * 60.00245 * 3 2 1 7 7 C 1.38818 * 120.00379 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00339 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47728 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47551 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47374 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46683 * 55.00520 * 13 12 11 15 15 N 1.46497 * 109.46983 * 295.00228 * 13 12 11 16 16 C 1.34780 * 119.99566 * 155.00136 * 15 13 12 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 13 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 16 15 20 20 C 1.34852 * 125.88922 * 274.68606 * 19 18 16 21 21 C 1.40892 * 107.41664 * 179.88544 * 20 19 18 22 22 C 1.34854 * 107.41763 * 0.38108 * 21 20 19 23 23 N 1.36339 * 125.89151 * 94.99879 * 19 18 16 24 24 H 0.97003 * 125.63769 * 359.95878 * 23 19 18 25 25 C 1.50699 * 109.47162 * 175.00059 * 13 12 11 26 26 C 1.38237 * 120.00179 * 79.72927 * 25 13 12 27 27 C 1.38229 * 120.00265 * 179.78660 * 26 25 13 28 28 C 1.38239 * 119.99998 * 0.44090 * 27 26 25 29 29 C 1.38237 * 119.99892 * 359.81509 * 28 27 26 30 30 C 1.38236 * 120.00027 * 359.97430 * 29 28 27 31 31 H 0.96996 * 120.00062 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99883 * 0.02562 * 9 7 2 33 33 H 1.09008 * 109.46660 * 59.99707 * 10 9 7 34 34 H 1.09000 * 109.47521 * 300.00618 * 10 9 7 35 35 H 1.09002 * 109.46646 * 60.00006 * 11 10 9 36 36 H 1.09000 * 109.47087 * 300.00839 * 11 10 9 37 37 H 1.09002 * 109.47285 * 60.00220 * 12 11 10 38 38 H 1.09000 * 109.47465 * 300.00431 * 12 11 10 39 39 H 0.96995 * 120.00423 * 334.99441 * 15 13 12 40 40 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 41 41 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 42 42 H 1.08003 * 126.29285 * 0.02790 * 20 19 18 43 43 H 1.07999 * 126.29338 * 180.13129 * 21 20 19 44 44 H 1.07994 * 125.89268 * 179.72770 * 22 21 20 45 45 H 1.08005 * 119.99494 * 359.97438 * 26 25 13 46 46 H 1.08001 * 120.00503 * 180.27262 * 27 26 25 47 47 H 1.07996 * 120.00525 * 179.82879 * 28 27 26 48 48 H 1.07995 * 120.00155 * 179.97438 * 29 28 27 49 49 H 1.08000 * 120.00423 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 6 1.8288 -6.1447 -0.0026 13 6 0.8346 -7.3077 -0.0024 14 1 0.1502 -7.2007 -0.8440 15 7 0.0741 -7.2997 1.2497 16 6 -1.1505 -7.8604 1.2979 17 8 -1.6232 -8.3712 0.3046 18 6 -1.9331 -7.8517 2.5857 19 6 -3.2590 -8.5355 2.3725 20 6 -4.3801 -7.9559 1.8972 21 6 -5.3812 -8.9463 1.8541 22 6 -4.8362 -10.0914 2.3126 23 7 -3.5337 -9.8454 2.6323 24 1 -2.9062 -10.4952 2.9860 25 6 1.5840 -8.6092 -0.1267 26 6 2.1909 -9.1662 0.9834 27 6 2.8745 -10.3623 0.8703 28 6 2.9590 -10.9969 -0.3549 29 6 2.3566 -10.4373 -1.4661 30 6 1.6693 -9.2434 -1.3521 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6854 -3.7149 0.8879 34 1 2.6841 -3.7142 -0.8921 35 1 0.4369 -4.7614 -0.8918 36 1 0.4375 -4.7626 0.8881 37 1 2.4555 -6.2029 0.8874 38 1 2.4555 -6.2022 -0.8926 39 1 0.4520 -6.8910 2.0441 40 1 -1.3712 -8.3800 3.3559 41 1 -2.1023 -6.8222 2.9012 42 1 -4.4896 -6.9229 1.6016 43 1 -6.3992 -8.8121 1.5195 44 1 -5.3439 -11.0396 2.4103 45 1 2.1283 -8.6683 1.9398 46 1 3.3449 -10.7997 1.7385 47 1 3.4954 -11.9300 -0.4439 48 1 2.4230 -10.9328 -2.4234 49 1 1.1983 -8.8063 -2.2202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277549172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:22 Heat of formation + Delta-G solvation = 34.780648 kcal Electronic energy + Delta-G solvation = -28557.558451 eV Core-core repulsion = 24677.987403 eV Total energy + Delta-G solvation = -3879.571048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.26017 -40.19112 -38.84277 -36.48701 -34.79037 -32.80913 -32.12808 -31.26129 -30.98008 -30.95348 -30.10836 -27.35502 -26.25176 -24.15862 -22.82062 -22.35236 -21.43295 -20.81693 -20.64778 -20.42247 -20.12546 -17.80637 -17.26536 -17.09387 -16.92985 -16.13206 -15.62892 -15.08209 -14.79548 -14.67556 -14.47796 -14.22773 -13.90311 -13.63117 -13.55061 -13.52537 -13.40121 -13.20876 -13.05674 -12.91876 -12.57073 -12.30347 -12.19649 -11.84567 -11.73891 -11.66821 -11.21185 -11.13771 -10.87179 -10.82040 -10.54551 -10.45044 -10.00513 -9.93467 -9.70675 -9.21527 -9.04568 -8.88221 -8.86550 -8.82774 -8.10276 -6.90707 -5.75296 -3.04022 1.19155 1.26672 2.10884 2.59155 2.89619 3.15255 3.32266 3.43845 3.49226 3.51713 3.67215 4.50689 4.53049 4.63660 4.72155 4.81639 4.84010 4.86039 4.95634 5.03550 5.09057 5.15175 5.25768 5.33018 5.37657 5.46514 5.47670 5.57083 5.66615 5.67776 5.83311 5.84382 5.90966 6.07909 6.16353 6.17544 6.27759 6.28440 6.29757 6.34827 6.36113 6.40181 6.57179 6.84857 6.86273 6.89190 6.92510 7.06224 7.38933 7.50654 7.71291 8.17968 8.43735 9.54672 10.13487 10.47772 11.47698 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.002742 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.678950 B =10208.324224 C =13244.885521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.153 3.847 11 C -0.124 4.124 12 C -0.117 4.117 13 C 0.186 3.814 14 H 0.098 0.902 15 N -0.721 5.721 16 C 0.514 3.486 17 O -0.523 6.523 18 C -0.073 4.073 19 C 0.032 3.968 20 C -0.178 4.178 21 C -0.200 4.200 22 C -0.015 4.015 23 N -0.554 5.554 24 H 0.409 0.591 25 C -0.086 4.086 26 C -0.107 4.107 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.120 4.120 30 C -0.104 4.104 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.401 0.599 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.161 0.839 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 -26.529 6.177 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.026 3.974 11 C -0.162 4.162 12 C -0.155 4.155 13 C 0.081 3.919 14 H 0.116 0.884 15 N -0.374 5.374 16 C 0.300 3.700 17 O -0.398 6.398 18 C -0.114 4.114 19 C -0.081 4.081 20 C -0.203 4.203 21 C -0.225 4.225 22 C -0.146 4.146 23 N -0.149 5.149 24 H 0.245 0.755 25 C -0.087 4.087 26 C -0.126 4.126 27 C -0.142 4.142 28 C -0.144 4.144 29 C -0.138 4.138 30 C -0.123 4.123 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.178 0.822 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.130 -26.866 5.502 27.446 hybrid contribution 0.625 0.784 0.489 1.116 sum -0.505 -26.081 5.992 26.765 Atomic orbital electron populations 1.69668 1.05102 1.25527 1.57880 1.24753 0.95537 0.97711 1.03114 0.86123 0.78764 0.84149 0.77206 1.20578 1.21846 1.21862 1.19280 0.91040 0.84218 1.42484 0.91185 1.42383 1.05904 1.00090 1.89477 1.20632 0.93503 0.85643 0.97643 1.21731 0.98828 0.93243 1.02428 1.21824 0.97302 0.92946 1.03420 1.19922 0.92600 0.91367 0.87976 0.88431 1.46029 1.17577 1.60107 1.13638 1.20524 0.81156 0.77927 0.90426 1.90741 1.68756 1.43897 1.36411 1.20141 0.91821 1.03189 0.96234 1.19473 0.95661 0.84422 1.08497 1.20688 0.92733 0.99973 1.06867 1.20880 0.99963 0.93123 1.08486 1.21746 0.84657 1.00283 1.07955 1.41851 1.11180 1.09573 1.52285 0.75492 1.20264 0.97925 0.96781 0.93765 1.20898 0.97563 0.95863 0.98231 1.21101 0.99708 0.95796 0.97574 1.21122 1.00153 0.99997 0.93084 1.21127 0.98044 0.95974 0.98655 1.21052 0.98701 0.95247 0.97276 0.93556 0.78307 0.96554 0.96515 0.91822 0.91845 0.91216 0.90156 0.76397 0.88582 0.86415 0.84804 0.84860 0.82159 0.86413 0.86352 0.86395 0.86155 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.79 5.60 -59.91 -0.34 -19.12 16 10 C 0.15 3.02 6.26 -4.05 -0.03 3.00 16 11 C -0.12 -1.90 5.22 -26.74 -0.14 -2.04 16 12 C -0.12 -1.36 4.73 -26.73 -0.13 -1.49 16 13 C 0.19 2.12 2.17 -69.08 -0.15 1.97 16 14 H 0.10 1.32 7.44 -51.93 -0.39 0.93 16 15 N -0.72 -7.23 3.78 -54.93 -0.21 -7.43 16 16 C 0.51 6.05 7.78 -10.98 -0.09 5.96 16 17 O -0.52 -8.46 15.70 5.56 0.09 -8.37 16 18 C -0.07 -0.65 6.24 -29.03 -0.18 -0.83 16 19 C 0.03 0.36 5.66 -81.79 -0.46 -0.10 16 20 C -0.18 -2.24 10.76 -39.78 -0.43 -2.67 16 21 C -0.20 -2.28 10.86 -39.78 -0.43 -2.72 16 22 C -0.02 -0.15 11.94 -16.75 -0.20 -0.35 16 23 N -0.55 -5.25 6.07 -9.12 -0.06 -5.30 16 24 H 0.41 2.73 8.96 -40.82 -0.37 2.36 16 25 C -0.09 -0.96 4.91 -104.62 -0.51 -1.48 16 26 C -0.11 -1.07 9.32 -39.58 -0.37 -1.44 16 27 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 28 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 29 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 30 C -0.10 -1.17 9.67 -39.58 -0.38 -1.55 16 31 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16 33 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.40 3.08 8.60 -40.82 -0.35 2.73 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.12 0.98 7.73 -52.48 -0.41 0.57 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 LS Contribution 413.91 15.07 6.24 6.24 Total: -1.00 -36.29 413.91 -11.20 -47.49 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -7.69 Total: 12.63 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -4.94 Total: -15.87 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.13 Total: -59.62 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.29 -11.20 -47.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277549172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.272 kcal (2) G-P(sol) polarization free energy of solvation -36.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds