Wall clock time and date at job start Wed Apr 1 2020 00:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48497 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46917 * 300.00321 * 3 2 1 6 6 H 1.48507 * 109.46729 * 60.00245 * 3 2 1 7 7 C 1.38818 * 120.00379 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00339 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47728 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47551 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47374 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46683 * 55.00520 * 13 12 11 15 15 N 1.46497 * 109.46983 * 295.00228 * 13 12 11 16 16 C 1.34780 * 119.99566 * 155.00136 * 15 13 12 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 13 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 16 15 20 20 C 1.34852 * 125.88922 * 274.68606 * 19 18 16 21 21 C 1.40892 * 107.41664 * 179.88544 * 20 19 18 22 22 C 1.34854 * 107.41763 * 0.38108 * 21 20 19 23 23 N 1.36339 * 125.89151 * 94.99879 * 19 18 16 24 24 H 0.97003 * 125.63769 * 359.95878 * 23 19 18 25 25 C 1.50699 * 109.47162 * 175.00059 * 13 12 11 26 26 C 1.38237 * 120.00179 * 79.72927 * 25 13 12 27 27 C 1.38229 * 120.00265 * 179.78660 * 26 25 13 28 28 C 1.38239 * 119.99998 * 0.44090 * 27 26 25 29 29 C 1.38237 * 119.99892 * 359.81509 * 28 27 26 30 30 C 1.38236 * 120.00027 * 359.97430 * 29 28 27 31 31 H 0.96996 * 120.00062 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99883 * 0.02562 * 9 7 2 33 33 H 1.09008 * 109.46660 * 59.99707 * 10 9 7 34 34 H 1.09000 * 109.47521 * 300.00618 * 10 9 7 35 35 H 1.09002 * 109.46646 * 60.00006 * 11 10 9 36 36 H 1.09000 * 109.47087 * 300.00839 * 11 10 9 37 37 H 1.09002 * 109.47285 * 60.00220 * 12 11 10 38 38 H 1.09000 * 109.47465 * 300.00431 * 12 11 10 39 39 H 0.96995 * 120.00423 * 334.99441 * 15 13 12 40 40 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 41 41 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 42 42 H 1.08003 * 126.29285 * 0.02790 * 20 19 18 43 43 H 1.07999 * 126.29338 * 180.13129 * 21 20 19 44 44 H 1.07994 * 125.89268 * 179.72770 * 22 21 20 45 45 H 1.08005 * 119.99494 * 359.97438 * 26 25 13 46 46 H 1.08001 * 120.00503 * 180.27262 * 27 26 25 47 47 H 1.07996 * 120.00525 * 179.82879 * 28 27 26 48 48 H 1.07995 * 120.00155 * 179.97438 * 29 28 27 49 49 H 1.08000 * 120.00423 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 6 1.8288 -6.1447 -0.0026 13 6 0.8346 -7.3077 -0.0024 14 1 0.1502 -7.2007 -0.8440 15 7 0.0741 -7.2997 1.2497 16 6 -1.1505 -7.8604 1.2979 17 8 -1.6232 -8.3712 0.3046 18 6 -1.9331 -7.8517 2.5857 19 6 -3.2590 -8.5355 2.3725 20 6 -4.3801 -7.9559 1.8972 21 6 -5.3812 -8.9463 1.8541 22 6 -4.8362 -10.0914 2.3126 23 7 -3.5337 -9.8454 2.6323 24 1 -2.9062 -10.4952 2.9860 25 6 1.5840 -8.6092 -0.1267 26 6 2.1909 -9.1662 0.9834 27 6 2.8745 -10.3623 0.8703 28 6 2.9590 -10.9969 -0.3549 29 6 2.3566 -10.4373 -1.4661 30 6 1.6693 -9.2434 -1.3521 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6854 -3.7149 0.8879 34 1 2.6841 -3.7142 -0.8921 35 1 0.4369 -4.7614 -0.8918 36 1 0.4375 -4.7626 0.8881 37 1 2.4555 -6.2029 0.8874 38 1 2.4555 -6.2022 -0.8926 39 1 0.4520 -6.8910 2.0441 40 1 -1.3712 -8.3800 3.3559 41 1 -2.1023 -6.8222 2.9012 42 1 -4.4896 -6.9229 1.6016 43 1 -6.3992 -8.8121 1.5195 44 1 -5.3439 -11.0396 2.4103 45 1 2.1283 -8.6683 1.9398 46 1 3.3449 -10.7997 1.7385 47 1 3.4954 -11.9300 -0.4439 48 1 2.4230 -10.9328 -2.4234 49 1 1.1983 -8.8063 -2.2202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277549172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:21 Heat of formation + Delta-G solvation = 12.388452 kcal Electronic energy + Delta-G solvation = -28558.529450 eV Core-core repulsion = 24677.987403 eV Total energy + Delta-G solvation = -3880.542046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05941 -41.05358 -39.67833 -37.70626 -36.35699 -34.21956 -33.29802 -32.13675 -31.78941 -31.73403 -31.59939 -28.54291 -27.28433 -25.71751 -23.86854 -23.50568 -22.32762 -22.19720 -21.44802 -21.30441 -20.96674 -19.14296 -18.57276 -18.08276 -17.81873 -17.06793 -16.62587 -16.44044 -16.00899 -15.76044 -15.50401 -15.32278 -15.29682 -14.88482 -14.62007 -14.38802 -14.28396 -14.21896 -14.14900 -13.87299 -13.51856 -13.33624 -13.21595 -13.11472 -12.90609 -12.75164 -12.56309 -12.49559 -12.15507 -12.05651 -11.92523 -11.87692 -11.73096 -11.62923 -10.94483 -10.92526 -10.14079 -9.79405 -9.71132 -9.61127 -8.99987 -8.91265 -7.95262 -5.24483 0.43273 0.52326 1.30055 1.47491 1.48568 1.58714 1.69470 2.04973 2.35756 2.56014 2.57253 2.90423 3.38578 3.58582 3.76137 3.91720 3.99335 4.07177 4.13093 4.13907 4.20035 4.24463 4.30402 4.44271 4.46574 4.56485 4.57281 4.64930 4.67576 4.72045 4.76941 4.84954 4.87357 4.92194 5.06368 5.10913 5.17298 5.35866 5.36491 5.42288 5.43210 5.46156 5.50920 5.58445 5.63326 5.76334 6.08985 6.13163 6.22740 6.27405 6.59033 6.83711 7.32223 7.33076 8.10178 8.32254 9.28618 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.002742 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.678950 B =10208.324224 C =13244.885521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.750 5.750 10 C 0.151 3.849 11 C -0.110 4.110 12 C -0.102 4.102 13 C 0.195 3.805 14 H 0.069 0.931 15 N -0.709 5.709 16 C 0.513 3.487 17 O -0.574 6.574 18 C -0.067 4.067 19 C 0.024 3.976 20 C -0.216 4.216 21 C -0.230 4.230 22 C -0.008 4.008 23 N -0.547 5.547 24 H 0.424 0.576 25 C -0.099 4.099 26 C -0.112 4.112 27 C -0.126 4.126 28 C -0.129 4.129 29 C -0.130 4.130 30 C -0.128 4.128 31 H 0.251 0.749 32 H 0.372 0.628 33 H 0.028 0.972 34 H 0.016 0.984 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.416 0.584 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.122 0.878 43 H 0.139 0.861 44 H 0.194 0.806 45 H 0.136 0.864 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.135 0.865 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 -28.274 8.012 29.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.393 5.393 10 C 0.025 3.975 11 C -0.148 4.148 12 C -0.140 4.140 13 C 0.089 3.911 14 H 0.087 0.913 15 N -0.362 5.362 16 C 0.300 3.700 17 O -0.452 6.452 18 C -0.108 4.108 19 C -0.089 4.089 20 C -0.241 4.241 21 C -0.255 4.255 22 C -0.140 4.140 23 N -0.143 5.143 24 H 0.262 0.738 25 C -0.101 4.101 26 C -0.131 4.131 27 C -0.144 4.144 28 C -0.147 4.147 29 C -0.148 4.148 30 C -0.147 4.147 31 H 0.060 0.940 32 H 0.204 0.796 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.253 0.747 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.154 0.846 46 H 0.162 0.838 47 H 0.159 0.841 48 H 0.152 0.848 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.018 -28.638 7.369 29.588 hybrid contribution 0.003 1.233 -0.113 1.238 sum 1.021 -27.404 7.256 28.367 Atomic orbital electron populations 1.69826 1.06680 1.26036 1.59592 1.25610 0.96431 1.01244 1.03745 0.85060 0.78262 0.79667 0.76698 1.18906 1.22150 1.21833 1.19694 0.91538 0.85405 1.41060 0.90561 1.42649 1.05670 1.01493 1.89440 1.20831 0.94174 0.84775 0.97750 1.21566 0.97940 0.93547 1.01751 1.21681 0.97012 0.90791 1.04507 1.19653 0.91963 0.91778 0.87673 0.91323 1.45927 1.17094 1.59456 1.13721 1.21026 0.81270 0.76922 0.90742 1.90725 1.69877 1.46260 1.38351 1.20214 0.90766 1.04343 0.95431 1.19735 0.96071 0.85145 1.07963 1.20871 0.94379 1.00111 1.08690 1.21149 1.00489 0.93883 1.09977 1.22257 0.84673 1.00909 1.06149 1.41904 1.11471 1.09320 1.51593 0.73762 1.20225 0.98742 0.96710 0.94391 1.21138 0.97239 0.96286 0.98397 1.21458 0.99112 0.95396 0.98463 1.21474 0.99662 1.00749 0.92816 1.21373 0.97870 0.95613 0.99903 1.21197 0.99743 0.96319 0.97430 0.93999 0.79609 0.95405 0.96645 0.93625 0.91500 0.89071 0.90111 0.74673 0.84817 0.85127 0.86030 0.84285 0.78867 0.84594 0.83829 0.84068 0.84758 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.75 -38.59 5.60 -343.45 -1.92 -40.52 16 10 C 0.15 5.85 6.26 86.38 0.54 6.39 16 11 C -0.11 -3.33 5.22 30.59 0.16 -3.17 16 12 C -0.10 -2.26 4.73 30.59 0.14 -2.11 16 13 C 0.19 4.37 2.17 44.25 0.10 4.47 16 14 H 0.07 1.96 7.44 -2.38 -0.02 1.95 16 15 N -0.71 -13.37 3.78 -446.09 -1.69 -15.05 16 16 C 0.51 11.79 7.78 87.66 0.68 12.47 16 17 O -0.57 -19.02 15.70 -3.03 -0.05 -19.07 16 18 C -0.07 -1.09 6.24 29.10 0.18 -0.91 16 19 C 0.02 0.53 5.66 41.08 0.23 0.76 16 20 C -0.22 -5.65 10.76 22.14 0.24 -5.41 16 21 C -0.23 -5.37 10.86 22.14 0.24 -5.13 16 22 C -0.01 -0.15 11.94 83.21 0.99 0.84 16 23 N -0.55 -9.54 6.07 -182.76 -1.11 -10.65 16 24 H 0.42 4.66 8.96 -92.71 -0.83 3.83 16 25 C -0.10 -2.14 4.91 -19.86 -0.10 -2.23 16 26 C -0.11 -1.96 9.32 22.27 0.21 -1.75 16 27 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 28 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 29 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 30 C -0.13 -2.89 9.67 22.27 0.22 -2.67 16 31 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.37 20.49 7.67 -92.71 -0.71 19.78 16 33 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.97 7.75 -2.39 -0.02 1.95 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.42 5.37 8.60 -92.71 -0.80 4.57 16 40 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 44 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 45 H 0.14 1.78 7.73 -2.91 -0.02 1.76 16 46 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 48 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 49 H 0.11 2.61 8.04 -2.91 -0.02 2.59 16 Total: -1.00 -80.25 413.91 1.98 -78.26 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -1.37 Total: 39.89 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 5.81 Total: -21.34 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -4.44 Total: -126.14 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -80.25 1.98 -78.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277549172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.651 kcal (2) G-P(sol) polarization free energy of solvation -80.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds