Wall clock time and date at job start Wed Apr 1 2020 00:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00022 * 2 1 4 4 H 1.48495 * 109.46816 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47104 * 119.99939 * 3 2 1 7 7 C 1.37874 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00452 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99763 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.48221 * 110.99911 * 169.99922 * 10 9 7 12 12 C 1.52668 * 85.71350 * 223.27280 * 11 10 9 13 13 C 1.48221 * 110.99905 * 70.27716 * 10 9 7 14 14 C 1.52241 * 122.19787 * 150.21957 * 12 11 10 15 15 N 1.47326 * 87.60830 * 150.21961 * 14 12 11 16 16 C 1.34778 * 135.87392 * 153.98052 * 15 14 12 17 17 O 1.21584 * 119.99997 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99931 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99928 * 180.02562 * 18 16 15 20 20 H 1.08999 * 115.56158 * 9.31205 * 19 18 16 21 21 C 1.53077 * 117.49146 * 223.60142 * 19 18 16 22 22 C 1.53003 * 59.98475 * 252.51581 * 21 19 18 23 23 H 1.09000 * 117.49815 * 107.50190 * 22 21 19 24 24 C 1.50701 * 117.49955 * 252.50242 * 22 21 19 25 25 C 1.38234 * 120.00243 * 188.74557 * 24 22 21 26 26 C 1.38234 * 120.00240 * 180.02562 * 25 24 22 27 27 C 1.38233 * 120.00037 * 0.26327 * 26 25 24 28 28 C 1.38238 * 119.99752 * 359.47832 * 27 26 25 29 29 C 1.38234 * 120.00005 * 0.52168 * 28 27 26 30 30 C 1.47316 * 88.25223 * 334.24135 * 15 14 12 31 31 H 0.96996 * 119.99562 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47108 * 59.99771 * 9 7 2 33 33 H 1.08993 * 109.47418 * 299.99400 * 9 7 2 34 34 H 1.09006 * 113.83277 * 109.07675 * 11 10 9 35 35 H 1.08994 * 113.83394 * 337.46938 * 11 10 9 36 36 H 1.08997 * 113.83334 * 22.53065 * 13 10 9 37 37 H 1.08994 * 113.83267 * 250.92150 * 13 10 9 38 38 H 1.09002 * 113.53133 * 35.54229 * 14 12 11 39 39 H 1.09003 * 113.59598 * 264.91105 * 14 12 11 40 40 H 0.97005 * 119.99986 * 0.02562 * 18 16 15 41 41 H 1.09002 * 117.50901 * 145.03789 * 21 19 18 42 42 H 1.08990 * 117.51483 * 359.97438 * 21 19 18 43 43 H 1.07999 * 119.99751 * 359.97438 * 25 24 22 44 44 H 1.08002 * 119.99744 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 46 46 H 1.07999 * 119.99924 * 180.23487 * 28 27 26 47 47 H 1.08001 * 120.00310 * 179.72165 * 29 28 27 48 48 H 1.08995 * 113.53248 * 140.44241 * 30 15 14 49 49 H 1.09002 * 113.52715 * 271.07916 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5150 -4.9050 0.2408 12 6 2.6757 -5.2203 1.1811 13 6 2.9057 -3.7160 1.3031 14 6 2.5114 -6.1173 2.4002 15 7 3.9233 -6.5023 2.2303 16 6 4.9074 -6.9506 3.0348 17 8 4.6944 -7.1191 4.2199 18 7 6.1274 -7.2122 2.5255 19 6 7.1969 -7.7000 3.3999 20 1 6.8905 -7.9756 4.4089 21 6 8.5876 -7.0841 3.2265 22 6 8.3200 -8.5149 2.7552 23 1 8.2629 -8.6884 1.6806 24 6 8.9178 -9.6372 3.5639 25 6 8.8645 -10.9349 3.0905 26 6 9.4124 -11.9644 3.8326 27 6 10.0088 -11.6971 5.0507 28 6 10.0669 -10.3987 5.5216 29 6 9.5190 -9.3691 4.7795 30 6 3.7928 -6.1776 0.7993 31 1 -0.4849 0.8400 -0.0004 32 1 0.6247 -2.5570 -0.8896 33 1 0.6241 -2.5567 0.8903 34 1 1.4705 -5.5510 -0.6361 35 1 0.5545 -4.8027 0.7458 36 1 2.3664 -3.2536 2.1298 37 1 3.9557 -3.4263 1.2623 38 1 1.8142 -6.9405 2.2440 39 1 2.3179 -5.5692 3.3223 40 1 6.2975 -7.0774 1.5801 41 1 9.1960 -6.9545 4.1216 42 1 8.7065 -6.3166 2.4619 43 1 8.3940 -11.1444 2.1412 44 1 9.3704 -12.9783 3.4629 45 1 10.4330 -12.5020 5.6325 46 1 10.5363 -10.1893 6.4715 47 1 9.5604 -8.3553 5.1495 48 1 4.6687 -5.6788 0.3846 49 1 3.4571 -7.0178 0.1914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277938643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:30 Heat of formation + Delta-G solvation = 106.031747 kcal Electronic energy + Delta-G solvation = -28070.784170 eV Core-core repulsion = 24194.302801 eV Total energy + Delta-G solvation = -3876.481368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07097 -40.13396 -39.10917 -37.35441 -36.32543 -33.37651 -32.81001 -31.28704 -30.65900 -29.56763 -27.25545 -26.14398 -25.74382 -24.25994 -24.11022 -22.86211 -22.18456 -20.91179 -20.72640 -20.08022 -18.09127 -17.97305 -17.30165 -16.80466 -16.49191 -15.89654 -15.56022 -15.41141 -15.04119 -14.96996 -14.55789 -14.47144 -14.28228 -13.98129 -13.71295 -13.24898 -13.21326 -13.11092 -12.97273 -12.52356 -12.26110 -12.04275 -11.83204 -11.73992 -11.64396 -11.53124 -11.34635 -10.98371 -10.84465 -10.76758 -10.58046 -10.41800 -10.29974 -10.13413 -9.66358 -9.33783 -9.25538 -9.21204 -8.79357 -8.51603 -8.48481 -7.80388 -6.07959 -4.10054 0.96235 1.06932 2.30486 3.00286 3.30769 3.34959 3.35353 3.37747 3.63328 3.81913 4.25560 4.30069 4.41433 4.43862 4.48497 4.60218 4.63198 4.67326 4.78197 4.85875 4.89337 5.02153 5.13021 5.23099 5.25739 5.28341 5.39713 5.46071 5.49777 5.59608 5.68765 5.69707 5.70962 5.72654 5.89219 5.91512 6.00567 6.13631 6.18297 6.18643 6.26798 6.33456 6.34831 6.48136 6.64318 6.65847 7.07350 7.17727 7.59472 7.84341 7.96748 8.07720 8.37980 8.52561 8.96926 9.54752 11.03097 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.001772 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.966432 B =15800.487689 C =16501.226081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.161 3.839 10 N -0.476 5.476 11 C 0.020 3.980 12 C -0.131 4.131 13 C 0.054 3.946 14 C 0.137 3.863 15 N -0.662 5.662 16 C 0.740 3.260 17 O -0.590 6.590 18 N -0.716 5.716 19 C 0.123 3.877 20 H 0.140 0.860 21 C -0.186 4.186 22 C -0.129 4.129 23 H 0.116 0.884 24 C -0.047 4.047 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.126 4.126 28 C -0.116 4.116 29 C -0.120 4.120 30 C 0.130 3.870 31 H 0.262 0.738 32 H 0.033 0.967 33 H -0.001 1.001 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.398 0.602 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.125 0.875 48 H 0.079 0.921 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.429 -22.699 5.746 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.035 3.965 10 N -0.199 5.199 11 C -0.110 4.110 12 C -0.133 4.133 13 C -0.075 4.075 14 C 0.013 3.987 15 N -0.400 5.400 16 C 0.443 3.557 17 O -0.468 6.468 18 N -0.369 5.369 19 C 0.016 3.984 20 H 0.158 0.842 21 C -0.225 4.225 22 C -0.149 4.149 23 H 0.134 0.866 24 C -0.048 4.048 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.134 4.134 29 C -0.138 4.138 30 C 0.008 3.992 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.017 0.983 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.232 0.768 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.143 0.857 48 H 0.098 0.902 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.606 -22.644 6.161 29.337 hybrid contribution -0.018 0.957 0.108 0.963 sum 17.588 -21.687 6.270 28.618 Atomic orbital electron populations 1.69942 1.06052 1.26974 1.50653 1.24982 0.94872 0.99352 0.95246 0.86559 0.79472 0.82717 0.78672 1.20158 1.21295 1.20251 1.21044 0.93372 0.90008 1.50651 0.92100 1.20207 0.90998 0.88718 0.96617 1.68620 1.21048 1.01880 1.28360 1.23589 0.94989 0.95138 0.97286 1.23159 0.97723 0.96163 0.96216 1.23280 1.00937 0.89412 0.93874 1.22762 0.80442 0.96230 0.99233 1.48704 1.11684 1.69250 1.10394 1.15093 0.79344 0.77189 0.84067 1.90916 1.81796 1.60040 1.14090 1.44385 1.09560 1.71275 1.11641 1.21544 0.81711 0.99440 0.95707 0.84248 1.23707 0.99703 0.94852 1.04238 1.21616 1.02927 0.90953 0.99381 0.86646 1.19068 0.97817 0.93266 0.94618 1.20977 0.99782 0.92070 1.00223 1.21141 0.98372 0.99065 0.95043 1.21168 1.00041 0.96819 0.96396 1.21146 0.99631 0.92889 0.99776 1.21107 0.98514 0.99613 0.94531 1.22545 0.98209 0.96208 0.82282 0.92802 0.94908 0.98285 0.89949 0.91196 0.90847 0.90387 0.89821 0.90232 0.76784 0.87476 0.87801 0.86057 0.86042 0.86163 0.85994 0.85725 0.90241 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.13 8.83 -34.44 -0.30 -14.44 16 8 H 0.06 1.67 7.79 -52.49 -0.41 1.26 16 9 C 0.16 4.03 4.58 -4.97 -0.02 4.01 16 10 N -0.48 -9.57 6.25 -246.96 -1.54 -11.11 16 11 C 0.02 0.31 7.81 -3.27 -0.03 0.28 16 12 C -0.13 -1.81 1.46 -156.00 -0.23 -2.04 16 13 C 0.05 0.96 7.27 -3.26 -0.02 0.94 16 14 C 0.14 1.78 8.44 -7.51 -0.06 1.72 16 15 N -0.66 -8.78 3.70 -191.02 -0.71 -9.48 16 16 C 0.74 10.86 8.79 -86.92 -0.76 10.10 16 17 O -0.59 -10.98 16.68 5.29 0.09 -10.90 16 18 N -0.72 -7.85 5.57 -58.64 -0.33 -8.17 16 19 C 0.12 1.23 6.07 -67.89 -0.41 0.82 16 20 H 0.14 1.67 7.40 -51.93 -0.38 1.29 16 21 C -0.19 -1.44 9.79 -26.69 -0.26 -1.70 16 22 C -0.13 -1.01 5.96 -91.77 -0.55 -1.56 16 23 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 24 C -0.05 -0.40 5.61 -104.62 -0.59 -0.99 16 25 C -0.11 -0.90 9.74 -39.58 -0.39 -1.29 16 26 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 27 C -0.13 -0.91 10.05 -39.58 -0.40 -1.30 16 28 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 29 C -0.12 -0.97 9.30 -39.58 -0.37 -1.34 16 30 C 0.13 1.47 8.08 -7.64 -0.06 1.41 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.00 -0.02 7.71 -51.93 -0.40 -0.42 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.10 7.80 -51.93 -0.40 0.69 16 36 H 0.07 1.42 7.79 -51.93 -0.40 1.01 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.40 3.44 8.53 -40.82 -0.35 3.10 16 41 H 0.11 0.73 6.18 -51.93 -0.32 0.41 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.86 6.03 -52.49 -0.32 0.54 16 48 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -33.31 406.71 -13.61 -46.91 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.62 Total: 2.13 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -5.34 Total: -6.42 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -1.84 Total: -54.28 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.31 -13.61 -46.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.947 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds