Wall clock time and date at job start Wed Apr 1 2020 00:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00022 * 2 1 4 4 H 1.48495 * 109.46816 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47104 * 119.99939 * 3 2 1 7 7 C 1.37874 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00452 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99763 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.48221 * 110.99911 * 169.99922 * 10 9 7 12 12 C 1.52668 * 85.71350 * 223.27280 * 11 10 9 13 13 C 1.48221 * 110.99905 * 70.27716 * 10 9 7 14 14 C 1.52241 * 122.19787 * 150.21957 * 12 11 10 15 15 N 1.47326 * 87.60830 * 150.21961 * 14 12 11 16 16 C 1.34778 * 135.87392 * 153.98052 * 15 14 12 17 17 O 1.21584 * 119.99997 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99931 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99928 * 180.02562 * 18 16 15 20 20 H 1.08999 * 115.56158 * 9.31205 * 19 18 16 21 21 C 1.53077 * 117.49146 * 223.60142 * 19 18 16 22 22 C 1.53003 * 59.98475 * 252.51581 * 21 19 18 23 23 H 1.09000 * 117.49815 * 107.50190 * 22 21 19 24 24 C 1.50701 * 117.49955 * 252.50242 * 22 21 19 25 25 C 1.38234 * 120.00243 * 188.74557 * 24 22 21 26 26 C 1.38234 * 120.00240 * 180.02562 * 25 24 22 27 27 C 1.38233 * 120.00037 * 0.26327 * 26 25 24 28 28 C 1.38238 * 119.99752 * 359.47832 * 27 26 25 29 29 C 1.38234 * 120.00005 * 0.52168 * 28 27 26 30 30 C 1.47316 * 88.25223 * 334.24135 * 15 14 12 31 31 H 0.96996 * 119.99562 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47108 * 59.99771 * 9 7 2 33 33 H 1.08993 * 109.47418 * 299.99400 * 9 7 2 34 34 H 1.09006 * 113.83277 * 109.07675 * 11 10 9 35 35 H 1.08994 * 113.83394 * 337.46938 * 11 10 9 36 36 H 1.08997 * 113.83334 * 22.53065 * 13 10 9 37 37 H 1.08994 * 113.83267 * 250.92150 * 13 10 9 38 38 H 1.09002 * 113.53133 * 35.54229 * 14 12 11 39 39 H 1.09003 * 113.59598 * 264.91105 * 14 12 11 40 40 H 0.97005 * 119.99986 * 0.02562 * 18 16 15 41 41 H 1.09002 * 117.50901 * 145.03789 * 21 19 18 42 42 H 1.08990 * 117.51483 * 359.97438 * 21 19 18 43 43 H 1.07999 * 119.99751 * 359.97438 * 25 24 22 44 44 H 1.08002 * 119.99744 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 46 46 H 1.07999 * 119.99924 * 180.23487 * 28 27 26 47 47 H 1.08001 * 120.00310 * 179.72165 * 29 28 27 48 48 H 1.08995 * 113.53248 * 140.44241 * 30 15 14 49 49 H 1.09002 * 113.52715 * 271.07916 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5150 -4.9050 0.2408 12 6 2.6757 -5.2203 1.1811 13 6 2.9057 -3.7160 1.3031 14 6 2.5114 -6.1173 2.4002 15 7 3.9233 -6.5023 2.2303 16 6 4.9074 -6.9506 3.0348 17 8 4.6944 -7.1191 4.2199 18 7 6.1274 -7.2122 2.5255 19 6 7.1969 -7.7000 3.3999 20 1 6.8905 -7.9756 4.4089 21 6 8.5876 -7.0841 3.2265 22 6 8.3200 -8.5149 2.7552 23 1 8.2629 -8.6884 1.6806 24 6 8.9178 -9.6372 3.5639 25 6 8.8645 -10.9349 3.0905 26 6 9.4124 -11.9644 3.8326 27 6 10.0088 -11.6971 5.0507 28 6 10.0669 -10.3987 5.5216 29 6 9.5190 -9.3691 4.7795 30 6 3.7928 -6.1776 0.7993 31 1 -0.4849 0.8400 -0.0004 32 1 0.6247 -2.5570 -0.8896 33 1 0.6241 -2.5567 0.8903 34 1 1.4705 -5.5510 -0.6361 35 1 0.5545 -4.8027 0.7458 36 1 2.3664 -3.2536 2.1298 37 1 3.9557 -3.4263 1.2623 38 1 1.8142 -6.9405 2.2440 39 1 2.3179 -5.5692 3.3223 40 1 6.2975 -7.0774 1.5801 41 1 9.1960 -6.9545 4.1216 42 1 8.7065 -6.3166 2.4619 43 1 8.3940 -11.1444 2.1412 44 1 9.3704 -12.9783 3.4629 45 1 10.4330 -12.5020 5.6325 46 1 10.5363 -10.1893 6.4715 47 1 9.5604 -8.3553 5.1495 48 1 4.6687 -5.6788 0.3846 49 1 3.4571 -7.0178 0.1914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277938643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:29 Heat of formation + Delta-G solvation = 84.288864 kcal Electronic energy + Delta-G solvation = -28071.727012 eV Core-core repulsion = 24194.302801 eV Total energy + Delta-G solvation = -3877.424210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24031 -40.89098 -40.08988 -38.23968 -37.54165 -34.92537 -34.25978 -31.83622 -31.53186 -30.88903 -28.76284 -27.17513 -27.12388 -25.88394 -24.78901 -23.52656 -23.05526 -22.37142 -21.47990 -21.08476 -19.23854 -18.98746 -18.53907 -18.00813 -17.61805 -17.08826 -16.76601 -16.51317 -16.04440 -16.01019 -15.79151 -15.52382 -15.40878 -15.06336 -14.64065 -14.37598 -14.23313 -14.08810 -13.81496 -13.68259 -13.58792 -13.33468 -13.10189 -12.87369 -12.82401 -12.53651 -12.47166 -12.34443 -12.16616 -11.89700 -11.78548 -11.70737 -11.53429 -11.45833 -11.24693 -11.08120 -10.63022 -10.19615 -9.81285 -9.70960 -9.44949 -9.25706 -8.22729 -6.32611 0.38261 0.51147 1.33777 1.39943 1.42318 1.50329 1.98488 2.38927 2.66957 2.75824 3.06764 3.10763 3.17017 3.41160 3.58494 3.67170 3.75777 3.85009 3.89821 4.01659 4.16028 4.23189 4.29710 4.32635 4.46673 4.54873 4.58010 4.60649 4.62779 4.69687 4.72259 4.75931 4.79555 4.81183 4.92086 4.98092 5.01627 5.04421 5.07820 5.16182 5.17833 5.22518 5.48184 5.55290 5.59842 5.64307 5.70802 5.80796 6.12429 6.14116 6.16194 6.45088 6.82679 6.95627 7.37222 7.47675 8.88381 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.001772 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.966432 B =15800.487689 C =16501.226081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.176 3.824 10 N -0.488 5.488 11 C 0.024 3.976 12 C -0.114 4.114 13 C 0.047 3.953 14 C 0.137 3.863 15 N -0.665 5.665 16 C 0.733 3.267 17 O -0.638 6.638 18 N -0.701 5.701 19 C 0.098 3.902 20 H 0.113 0.887 21 C -0.173 4.173 22 C -0.109 4.109 23 H 0.131 0.869 24 C -0.066 4.066 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.133 4.133 28 C -0.128 4.128 29 C -0.133 4.133 30 C 0.143 3.857 31 H 0.265 0.735 32 H 0.006 0.994 33 H -0.026 1.026 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.412 0.588 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.130 0.870 48 H 0.090 0.910 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.413 -24.032 4.740 31.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.048 3.952 10 N -0.211 5.211 11 C -0.105 4.105 12 C -0.115 4.115 13 C -0.082 4.082 14 C 0.013 3.987 15 N -0.403 5.403 16 C 0.436 3.564 17 O -0.520 6.520 18 N -0.354 5.354 19 C -0.008 4.008 20 H 0.131 0.869 21 C -0.212 4.212 22 C -0.129 4.129 23 H 0.149 0.851 24 C -0.066 4.066 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.151 4.151 28 C -0.146 4.146 29 C -0.151 4.151 30 C 0.021 3.979 31 H 0.073 0.927 32 H 0.024 0.976 33 H -0.008 1.008 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.151 0.849 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.148 0.852 48 H 0.109 0.891 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 19.626 -23.993 5.113 31.416 hybrid contribution -0.620 1.297 0.463 1.510 sum 19.006 -22.696 5.576 30.124 Atomic orbital electron populations 1.70063 1.07604 1.27948 1.51532 1.25876 0.95740 1.03103 0.94751 0.85492 0.78243 0.78198 0.79038 1.19249 1.20776 1.19523 1.21398 0.93469 0.91436 1.50431 0.92316 1.19857 0.91091 0.90184 0.94030 1.68523 1.20682 1.02102 1.29781 1.23665 0.95122 0.92850 0.98847 1.22824 0.98046 0.93995 0.96671 1.23220 1.00100 0.92832 0.92061 1.22826 0.81272 0.96699 0.97894 1.48682 1.11450 1.68868 1.11287 1.15296 0.80291 0.77211 0.83566 1.90879 1.82725 1.62173 1.16252 1.44225 1.08498 1.70306 1.12356 1.21495 0.82269 1.02100 0.94967 0.86901 1.23777 0.97448 0.95200 1.04762 1.21617 1.00566 0.90818 0.99888 0.85111 1.19247 0.98508 0.93768 0.95079 1.21226 0.99976 0.92115 1.00920 1.21448 0.98018 0.99918 0.95115 1.21492 0.99710 0.97308 0.96595 1.21432 0.99637 0.93044 1.00448 1.21312 0.98807 1.00260 0.94746 1.22692 0.97414 0.96338 0.81462 0.92668 0.97603 1.00810 0.87063 0.91682 0.93200 0.90501 0.87091 0.91957 0.75186 0.86810 0.86749 0.84923 0.84213 0.84259 0.84474 0.85186 0.89123 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -29.76 8.83 25.60 0.23 -29.53 16 8 H 0.06 3.25 7.79 -2.91 -0.02 3.23 16 9 C 0.18 9.09 4.58 85.56 0.39 9.48 16 10 N -0.49 -19.62 6.25 -935.24 -5.84 -25.47 16 11 C 0.02 0.73 7.81 85.94 0.67 1.40 16 12 C -0.11 -2.97 1.46 -52.89 -0.08 -3.05 16 13 C 0.05 1.69 7.27 85.94 0.62 2.31 16 14 C 0.14 3.38 8.44 83.68 0.71 4.09 16 15 N -0.66 -16.50 3.70 -876.52 -3.24 -19.74 16 16 C 0.73 21.02 8.79 179.06 1.57 22.60 16 17 O -0.64 -24.21 16.68 -3.98 -0.07 -24.27 16 18 N -0.70 -14.42 5.57 -457.69 -2.55 -16.97 16 19 C 0.10 1.90 6.07 45.02 0.27 2.18 16 20 H 0.11 2.83 7.40 -2.39 -0.02 2.81 16 21 C -0.17 -2.42 9.79 30.62 0.30 -2.12 16 22 C -0.11 -1.55 5.96 -11.54 -0.07 -1.62 16 23 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 24 C -0.07 -1.05 5.61 -19.86 -0.11 -1.16 16 25 C -0.12 -1.83 9.74 22.27 0.22 -1.61 16 26 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 27 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 28 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 29 C -0.13 -2.08 9.30 22.27 0.21 -1.87 16 30 C 0.14 2.76 8.08 83.60 0.68 3.43 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H -0.03 -1.43 7.71 -2.39 -0.02 -1.45 16 34 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.06 2.02 7.80 -2.39 -0.02 2.00 16 36 H 0.05 2.02 7.79 -2.39 -0.02 2.00 16 37 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.41 6.08 8.53 -92.70 -0.79 5.29 16 41 H 0.11 1.42 6.18 -2.39 -0.01 1.41 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 46 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 47 H 0.13 1.74 6.03 -2.91 -0.02 1.72 16 48 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.73 406.71 -2.48 -77.21 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.16 Total: 17.71 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 6.74 Total: 0.69 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -11.35 Total: -117.51 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.07 Total: -24.27 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -74.73 -2.48 -77.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.503 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds