Wall clock time and date at job start Wed Apr 1 2020 00:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09006 * 110.43171 * 305.69621 * 11 10 9 13 13 C 1.54881 * 110.48896 * 68.24079 * 11 10 9 14 14 C 1.55032 * 102.68502 * 156.51815 * 13 11 10 15 15 C 1.54269 * 104.27833 * 322.23515 * 14 13 11 16 16 H 1.09007 * 110.03195 * 264.23347 * 15 14 13 17 17 N 1.46491 * 110.07753 * 142.82513 * 15 14 13 18 18 C 1.34771 * 120.00449 * 87.80548 * 17 15 14 19 19 O 1.21283 * 119.99721 * 0.02562 * 18 17 15 20 20 C 1.50701 * 120.00547 * 180.02562 * 18 17 15 21 21 N 1.46505 * 109.47354 * 180.02562 * 20 18 17 22 22 C 1.36829 * 125.06174 * 264.69465 * 21 20 18 23 23 C 1.34234 * 109.92626 * 179.81635 * 22 21 20 24 24 C 1.46483 * 106.99904 * 0.42957 * 23 22 21 25 25 C 1.39634 * 134.02924 * 179.70144 * 24 23 22 26 26 C 1.36623 * 119.76067 * 180.02562 * 25 24 23 27 27 C 1.38831 * 120.53357 * 0.02562 * 26 25 24 28 28 C 1.37757 * 120.66248 * 0.02562 * 27 26 25 29 29 C 1.37690 * 125.06180 * 84.99616 * 21 20 18 30 30 C 1.53876 * 106.60089 * 23.51415 * 15 14 13 31 31 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 33 33 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 34 34 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 35 35 H 1.09004 * 110.75541 * 274.93172 * 13 11 10 36 36 H 1.08994 * 110.75980 * 38.30785 * 13 11 10 37 37 H 1.08995 * 110.52567 * 203.49052 * 14 13 11 38 38 H 1.08999 * 110.48031 * 80.95068 * 14 13 11 39 39 H 0.97005 * 119.99746 * 267.80905 * 17 15 14 40 40 H 1.09002 * 109.46534 * 299.99747 * 20 18 17 41 41 H 1.08997 * 109.47302 * 59.99286 * 20 18 17 42 42 H 1.08002 * 125.03191 * 359.97438 * 22 21 20 43 43 H 1.07999 * 126.49780 * 180.14801 * 23 22 21 44 44 H 1.07997 * 120.11908 * 0.03891 * 25 24 23 45 45 H 1.08008 * 119.73630 * 179.97438 * 26 25 24 46 46 H 1.07992 * 119.67071 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.10549 * 179.97438 * 28 27 26 48 48 H 1.09001 * 110.03595 * 240.72276 * 30 15 14 49 49 H 1.08998 * 110.07283 * 119.30678 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3630 -4.7261 0.8097 13 6 0.3030 -4.8748 -1.3682 14 6 -0.1465 -6.3565 -1.4451 15 6 1.0400 -7.1453 -0.8536 16 1 1.6882 -7.5011 -1.6545 17 7 0.5480 -8.2783 -0.0661 18 6 0.3065 -9.4612 -0.6651 19 8 0.4970 -9.5877 -1.8562 20 6 -0.2002 -10.6266 0.1450 21 7 -0.3814 -11.7875 -0.7301 22 6 -1.5613 -12.1502 -1.3206 23 6 -1.3819 -13.2561 -2.0599 24 6 0.0256 -13.6385 -1.9240 25 6 0.8023 -14.6796 -2.4364 26 6 2.1267 -14.7612 -2.1111 27 6 2.7070 -13.8175 -1.2744 28 6 1.9589 -12.7829 -0.7569 29 6 0.6088 -12.6796 -1.0759 30 6 1.8095 -6.1681 0.0524 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0068 33 1 2.6846 -3.7098 -0.9038 34 1 2.6846 -3.7192 0.8761 35 1 -0.5590 -4.2077 -1.3530 36 1 0.9674 -4.6303 -2.1970 37 1 -0.3213 -6.6496 -2.4803 38 1 -1.0448 -6.5140 -0.8481 39 1 0.3960 -8.1771 0.8866 40 1 0.5224 -10.8687 0.9243 41 1 -1.1538 -10.3637 0.6027 42 1 -2.4974 -11.6230 -1.2104 43 1 -2.1339 -13.7696 -2.6406 44 1 0.3578 -15.4175 -3.0877 45 1 2.7270 -15.5669 -2.5074 46 1 3.7550 -13.8957 -1.0260 47 1 2.4194 -12.0540 -0.1065 48 1 2.8310 -6.0496 -0.3088 49 1 1.8167 -6.5360 1.0784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284247943.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:37 Heat of formation + Delta-G solvation = 32.402376 kcal Electronic energy + Delta-G solvation = -28291.984192 eV Core-core repulsion = 24412.310014 eV Total energy + Delta-G solvation = -3879.674177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66452 -40.03525 -38.14826 -37.12786 -34.90777 -33.59651 -33.11215 -31.20551 -30.66003 -29.12616 -28.84686 -28.25343 -26.64887 -24.38225 -22.95857 -22.21902 -21.92073 -21.38138 -20.45924 -20.27383 -19.69177 -17.75794 -17.54871 -17.05424 -16.73910 -16.24770 -15.64630 -15.49623 -15.00307 -14.95298 -14.41255 -14.27058 -14.06450 -13.98804 -13.65836 -13.45251 -13.32171 -13.08786 -12.91138 -12.82043 -12.56607 -12.23300 -11.86812 -11.83485 -11.79880 -11.37519 -11.12662 -11.07348 -10.85936 -10.76577 -10.61476 -10.34268 -10.30158 -10.23691 -9.99245 -9.80802 -9.67988 -9.24000 -8.86932 -8.37448 -7.88866 -6.91999 -5.77117 -3.05313 0.93103 1.42327 2.23592 2.25305 2.53862 3.01547 3.43425 3.47786 3.48813 3.74419 4.25306 4.29300 4.43230 4.55253 4.55536 4.56610 4.67676 4.73812 4.80158 4.91409 4.98034 5.21767 5.25407 5.42973 5.45847 5.49623 5.55696 5.57777 5.58943 5.61763 5.72382 5.82550 5.82967 5.85017 6.03579 6.08455 6.22135 6.25844 6.25955 6.40783 6.42898 6.52036 6.54760 6.56189 6.56606 6.77178 6.90734 6.94889 7.00299 7.21597 7.68874 7.90045 8.42134 9.53221 10.11830 10.46520 11.45767 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.031289 B = 0.001676 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.675021 B =16702.758161 C =17169.011362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.110 4.110 14 C -0.133 4.133 15 C 0.142 3.858 16 H 0.089 0.911 17 N -0.719 5.719 18 C 0.489 3.511 19 O -0.518 6.518 20 C 0.091 3.909 21 N -0.469 5.469 22 C 0.060 3.940 23 C -0.203 4.203 24 C -0.108 4.108 25 C -0.072 4.072 26 C -0.149 4.149 27 C -0.101 4.101 28 C -0.125 4.125 29 C 0.109 3.891 30 C -0.122 4.122 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.400 0.600 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.167 0.833 43 H 0.147 0.853 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.077 0.923 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 -30.687 1.222 30.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.148 4.148 14 C -0.171 4.171 15 C 0.038 3.962 16 H 0.108 0.892 17 N -0.372 5.372 18 C 0.273 3.727 19 O -0.393 6.393 20 C -0.036 4.036 21 N -0.152 5.152 22 C -0.064 4.064 23 C -0.228 4.228 24 C -0.112 4.112 25 C -0.091 4.091 26 C -0.168 4.168 27 C -0.120 4.120 28 C -0.146 4.146 29 C 0.004 3.996 30 C -0.161 4.161 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.184 0.816 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.132 0.868 48 H 0.095 0.905 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.260 -30.377 0.542 30.408 hybrid contribution 0.051 1.245 0.515 1.348 sum -1.209 -29.132 1.057 29.177 Atomic orbital electron populations 1.69647 1.05099 1.25721 1.57825 1.24734 0.95528 0.97672 1.03093 0.86264 0.78517 0.83554 0.77835 1.21289 1.21692 1.21310 1.19196 0.91003 0.84264 1.42642 0.91302 1.42330 1.05845 0.99929 1.89445 1.20696 0.93071 0.85373 0.97658 1.22147 0.97686 0.93678 0.98019 0.90698 1.22485 1.00515 0.94324 0.97517 1.22803 0.97427 0.95976 1.00933 1.21749 0.95680 0.84898 0.93922 0.89244 1.46231 1.67553 1.10958 1.12446 1.20937 0.78698 0.84179 0.88925 1.90791 1.50418 1.83154 1.14929 1.21597 1.05017 0.84483 0.92472 1.43339 1.07885 1.21616 1.42372 1.21775 0.89373 0.97724 0.97566 1.21646 0.94891 0.99851 1.06384 1.19200 0.94180 0.96977 1.00877 1.20258 0.93415 0.96602 0.98818 1.20611 0.95060 1.00287 1.00865 1.20784 0.99303 0.94294 0.97653 1.19995 0.90513 1.00351 1.03743 1.18181 0.90504 0.91540 0.99401 1.22435 0.99813 0.94763 0.99043 0.93503 0.78280 0.96285 0.96553 0.90798 0.91136 0.91573 0.91565 0.76516 0.86786 0.86156 0.81576 0.83552 0.86170 0.86169 0.85895 0.86756 0.90465 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.27 5.47 -59.90 -0.33 -18.60 16 10 C 0.16 3.11 5.54 -4.04 -0.02 3.09 16 11 C -0.10 -1.44 2.90 -88.96 -0.26 -1.70 16 12 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.65 6.11 -24.67 -0.15 -1.80 16 14 C -0.13 -1.66 6.54 -24.99 -0.16 -1.83 16 15 C 0.14 1.60 3.25 -66.81 -0.22 1.39 16 16 H 0.09 1.18 7.56 -51.93 -0.39 0.79 16 17 N -0.72 -6.27 5.04 -52.72 -0.27 -6.53 16 18 C 0.49 5.00 7.90 -10.99 -0.09 4.92 16 19 O -0.52 -7.91 16.08 5.55 0.09 -7.82 16 20 C 0.09 0.62 6.48 -5.19 -0.03 0.58 16 21 N -0.47 -4.59 2.27 -115.71 -0.26 -4.85 16 22 C 0.06 0.54 11.27 -16.73 -0.19 0.35 16 23 C -0.20 -1.98 11.08 -37.67 -0.42 -2.40 16 24 C -0.11 -1.22 6.37 -105.14 -0.67 -1.89 16 25 C -0.07 -0.71 10.05 -39.64 -0.40 -1.11 16 26 C -0.15 -1.35 9.97 -39.95 -0.40 -1.74 16 27 C -0.10 -0.93 10.01 -39.54 -0.40 -1.33 16 28 C -0.13 -1.30 10.00 -39.43 -0.39 -1.69 16 29 C 0.11 1.24 6.80 -83.99 -0.57 0.67 16 30 C -0.12 -1.40 6.14 -25.61 -0.16 -1.55 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.38 10.03 7.58 -40.82 -0.31 9.72 16 33 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.78 8.05 -51.93 -0.42 0.37 16 39 H 0.40 2.28 8.32 -40.82 -0.34 1.94 16 40 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.12 0.45 8.12 -51.93 -0.42 0.02 16 42 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.08 0.90 7.84 -51.93 -0.41 0.50 16 49 H 0.07 0.65 7.62 -51.93 -0.40 0.26 16 LS Contribution 405.03 15.07 6.10 6.10 Total: -1.00 -35.73 405.03 -11.45 -47.17 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.71 Total: 7.99 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -4.77 Total: -13.42 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.13 Total: -57.39 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.73 -11.45 -47.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284247943.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.574 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds