Wall clock time and date at job start Wed Apr 1 2020 00:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09006 * 110.43171 * 305.69621 * 11 10 9 13 13 C 1.54881 * 110.48896 * 68.24079 * 11 10 9 14 14 C 1.55032 * 102.68502 * 156.51815 * 13 11 10 15 15 C 1.54269 * 104.27833 * 322.23515 * 14 13 11 16 16 H 1.09007 * 110.03195 * 264.23347 * 15 14 13 17 17 N 1.46491 * 110.07753 * 142.82513 * 15 14 13 18 18 C 1.34771 * 120.00449 * 87.80548 * 17 15 14 19 19 O 1.21283 * 119.99721 * 0.02562 * 18 17 15 20 20 C 1.50701 * 120.00547 * 180.02562 * 18 17 15 21 21 N 1.46505 * 109.47354 * 180.02562 * 20 18 17 22 22 C 1.36829 * 125.06174 * 264.69465 * 21 20 18 23 23 C 1.34234 * 109.92626 * 179.81635 * 22 21 20 24 24 C 1.46483 * 106.99904 * 0.42957 * 23 22 21 25 25 C 1.39634 * 134.02924 * 179.70144 * 24 23 22 26 26 C 1.36623 * 119.76067 * 180.02562 * 25 24 23 27 27 C 1.38831 * 120.53357 * 0.02562 * 26 25 24 28 28 C 1.37757 * 120.66248 * 0.02562 * 27 26 25 29 29 C 1.37690 * 125.06180 * 84.99616 * 21 20 18 30 30 C 1.53876 * 106.60089 * 23.51415 * 15 14 13 31 31 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 33 33 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 34 34 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 35 35 H 1.09004 * 110.75541 * 274.93172 * 13 11 10 36 36 H 1.08994 * 110.75980 * 38.30785 * 13 11 10 37 37 H 1.08995 * 110.52567 * 203.49052 * 14 13 11 38 38 H 1.08999 * 110.48031 * 80.95068 * 14 13 11 39 39 H 0.97005 * 119.99746 * 267.80905 * 17 15 14 40 40 H 1.09002 * 109.46534 * 299.99747 * 20 18 17 41 41 H 1.08997 * 109.47302 * 59.99286 * 20 18 17 42 42 H 1.08002 * 125.03191 * 359.97438 * 22 21 20 43 43 H 1.07999 * 126.49780 * 180.14801 * 23 22 21 44 44 H 1.07997 * 120.11908 * 0.03891 * 25 24 23 45 45 H 1.08008 * 119.73630 * 179.97438 * 26 25 24 46 46 H 1.07992 * 119.67071 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.10549 * 179.97438 * 28 27 26 48 48 H 1.09001 * 110.03595 * 240.72276 * 30 15 14 49 49 H 1.08998 * 110.07283 * 119.30678 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3630 -4.7261 0.8097 13 6 0.3030 -4.8748 -1.3682 14 6 -0.1465 -6.3565 -1.4451 15 6 1.0400 -7.1453 -0.8536 16 1 1.6882 -7.5011 -1.6545 17 7 0.5480 -8.2783 -0.0661 18 6 0.3065 -9.4612 -0.6651 19 8 0.4970 -9.5877 -1.8562 20 6 -0.2002 -10.6266 0.1450 21 7 -0.3814 -11.7875 -0.7301 22 6 -1.5613 -12.1502 -1.3206 23 6 -1.3819 -13.2561 -2.0599 24 6 0.0256 -13.6385 -1.9240 25 6 0.8023 -14.6796 -2.4364 26 6 2.1267 -14.7612 -2.1111 27 6 2.7070 -13.8175 -1.2744 28 6 1.9589 -12.7829 -0.7569 29 6 0.6088 -12.6796 -1.0759 30 6 1.8095 -6.1681 0.0524 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0068 33 1 2.6846 -3.7098 -0.9038 34 1 2.6846 -3.7192 0.8761 35 1 -0.5590 -4.2077 -1.3530 36 1 0.9674 -4.6303 -2.1970 37 1 -0.3213 -6.6496 -2.4803 38 1 -1.0448 -6.5140 -0.8481 39 1 0.3960 -8.1771 0.8866 40 1 0.5224 -10.8687 0.9243 41 1 -1.1538 -10.3637 0.6027 42 1 -2.4974 -11.6230 -1.2104 43 1 -2.1339 -13.7696 -2.6406 44 1 0.3578 -15.4175 -3.0877 45 1 2.7270 -15.5669 -2.5074 46 1 3.7550 -13.8957 -1.0260 47 1 2.4194 -12.0540 -0.1065 48 1 2.8310 -6.0496 -0.3088 49 1 1.8167 -6.5360 1.0784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284247943.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:36 Heat of formation + Delta-G solvation = 11.096947 kcal Electronic energy + Delta-G solvation = -28292.908065 eV Core-core repulsion = 24412.310014 eV Total energy + Delta-G solvation = -3880.598050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.33075 -40.91335 -39.23156 -37.82177 -36.47325 -34.84491 -33.88565 -32.92186 -31.41987 -30.17995 -29.80640 -29.28810 -27.54219 -26.06464 -23.94759 -23.64290 -22.64893 -22.14518 -21.41880 -21.07202 -20.87995 -19.09215 -18.51906 -18.23537 -17.38127 -17.16851 -16.70366 -16.31032 -16.28426 -15.96863 -15.76235 -15.38161 -15.10730 -14.87272 -14.76897 -14.57708 -14.49957 -14.28849 -13.96207 -13.55733 -13.52028 -13.23561 -13.09791 -12.84869 -12.76749 -12.50166 -12.48311 -12.42976 -12.21327 -12.09805 -11.80316 -11.73973 -11.64757 -11.55404 -11.49539 -11.09860 -10.90401 -10.53244 -10.11974 -9.07748 -8.98064 -8.56518 -7.95036 -5.23011 0.23796 0.71099 1.46872 1.49685 1.50177 1.55836 1.58144 1.90191 2.29816 2.56187 3.02970 3.38231 3.52902 3.56271 3.69893 3.78748 3.82638 3.88316 3.99191 4.13607 4.17698 4.18892 4.30450 4.40403 4.48013 4.50860 4.57184 4.59469 4.60442 4.68484 4.75562 4.79715 4.85435 4.95050 5.04043 5.06648 5.07441 5.13632 5.18826 5.21694 5.36101 5.47025 5.52884 5.57476 5.57888 5.71870 5.86647 5.89165 6.27628 6.31637 6.31811 6.55021 7.19185 7.34104 8.11789 8.34716 9.28227 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.031289 B = 0.001676 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.675021 B =16702.758161 C =17169.011362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.156 3.844 11 C -0.087 4.087 12 H 0.077 0.923 13 C -0.110 4.110 14 C -0.122 4.122 15 C 0.151 3.849 16 H 0.071 0.929 17 N -0.704 5.704 18 C 0.490 3.510 19 O -0.574 6.574 20 C 0.092 3.908 21 N -0.474 5.474 22 C 0.057 3.943 23 C -0.225 4.225 24 C -0.138 4.138 25 C -0.088 4.088 26 C -0.155 4.155 27 C -0.110 4.110 28 C -0.141 4.141 29 C 0.084 3.916 30 C -0.109 4.109 31 H 0.251 0.749 32 H 0.374 0.626 33 H 0.015 0.985 34 H 0.022 0.978 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.419 0.581 40 H 0.141 0.859 41 H 0.159 0.841 42 H 0.196 0.804 43 H 0.161 0.839 44 H 0.135 0.865 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.125 0.875 48 H 0.077 0.923 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -31.779 2.753 31.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.386 5.386 10 C 0.030 3.970 11 C -0.106 4.106 12 H 0.095 0.905 13 C -0.149 4.149 14 C -0.160 4.160 15 C 0.046 3.954 16 H 0.089 0.911 17 N -0.357 5.357 18 C 0.276 3.724 19 O -0.453 6.453 20 C -0.033 4.033 21 N -0.157 5.157 22 C -0.068 4.068 23 C -0.249 4.249 24 C -0.143 4.143 25 C -0.107 4.107 26 C -0.174 4.174 27 C -0.129 4.129 28 C -0.162 4.162 29 C -0.022 4.022 30 C -0.147 4.147 31 H 0.060 0.940 32 H 0.206 0.794 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.258 0.742 40 H 0.158 0.842 41 H 0.177 0.823 42 H 0.213 0.787 43 H 0.178 0.822 44 H 0.152 0.848 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.143 0.857 48 H 0.095 0.905 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.698 -31.496 2.122 31.575 hybrid contribution -0.080 1.541 0.006 1.543 sum -0.778 -29.955 2.128 30.040 Atomic orbital electron populations 1.69803 1.06538 1.26089 1.59491 1.25552 0.96414 1.01047 1.03767 0.85224 0.77221 0.79244 0.78151 1.20627 1.22113 1.20287 1.19615 0.91486 0.85576 1.41260 0.90839 1.42543 1.05648 1.01127 1.89316 1.20886 0.93864 0.84860 0.97375 1.22021 0.96941 0.93801 0.97824 0.90476 1.22400 0.99498 0.95750 0.97202 1.22683 0.98430 0.94141 1.00766 1.21423 0.94759 0.85476 0.93770 0.91072 1.46032 1.66657 1.09861 1.13189 1.21552 0.77471 0.84966 0.88413 1.90780 1.52873 1.84066 1.17543 1.21882 1.07631 0.82069 0.91723 1.43560 1.07614 1.21922 1.42608 1.22315 0.90231 0.97506 0.96708 1.21967 0.94809 1.00778 1.07376 1.19655 0.95256 0.97783 1.01602 1.20570 0.93969 0.96880 0.99234 1.20947 0.95081 1.00816 1.00567 1.21141 1.00381 0.93989 0.97346 1.20263 0.90504 1.01068 1.04336 1.18509 0.91284 0.92335 1.00061 1.22320 0.99089 0.92451 1.00848 0.94035 0.79361 0.96714 0.95985 0.92824 0.92726 0.92671 0.90312 0.74233 0.84155 0.82329 0.78692 0.82190 0.84759 0.83964 0.83781 0.85677 0.90460 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.25 -13.85 9.99 84.04 0.84 -13.01 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -37.38 5.47 -343.44 -1.88 -39.26 16 10 C 0.16 6.01 5.54 86.38 0.48 6.49 16 11 C -0.09 -2.49 2.90 -9.72 -0.03 -2.52 16 12 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 13 C -0.11 -3.32 6.11 31.93 0.20 -3.12 16 14 C -0.12 -2.94 6.54 31.72 0.21 -2.73 16 15 C 0.15 3.16 3.25 45.72 0.15 3.31 16 16 H 0.07 1.83 7.56 -2.38 -0.02 1.81 16 17 N -0.70 -10.23 5.04 -439.11 -2.21 -12.44 16 18 C 0.49 8.98 7.90 87.66 0.69 9.67 16 19 O -0.57 -17.21 16.08 -3.04 -0.05 -17.25 16 20 C 0.09 0.97 6.48 85.63 0.56 1.53 16 21 N -0.47 -8.52 2.27 -519.99 -1.18 -9.70 16 22 C 0.06 0.94 11.27 83.00 0.94 1.88 16 23 C -0.22 -4.32 11.08 23.51 0.26 -4.06 16 24 C -0.14 -3.14 6.37 -20.20 -0.13 -3.27 16 25 C -0.09 -1.73 10.05 22.23 0.22 -1.50 16 26 C -0.16 -2.69 9.97 22.03 0.22 -2.47 16 27 C -0.11 -1.93 10.01 22.30 0.22 -1.70 16 28 C -0.14 -2.82 10.00 22.37 0.22 -2.59 16 29 C 0.08 1.86 6.80 39.03 0.27 2.13 16 30 C -0.11 -2.22 6.14 31.32 0.19 -2.03 16 31 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 32 H 0.37 19.93 7.58 -92.71 -0.70 19.22 16 33 H 0.01 0.59 8.06 -2.39 -0.02 0.57 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.05 1.79 8.00 -2.39 -0.02 1.77 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16 39 H 0.42 3.01 8.32 -92.70 -0.77 2.24 16 40 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.16 0.46 8.12 -2.39 -0.02 0.44 16 42 H 0.20 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 44 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 45 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 48 H 0.08 1.64 7.84 -2.39 -0.02 1.62 16 49 H 0.10 1.47 7.62 -2.39 -0.02 1.45 16 Total: -1.00 -79.62 405.03 2.45 -77.18 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.52 Total: 30.06 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 5.97 Total: -17.89 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -4.99 Total: -120.22 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.05 Total: -17.25 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -79.62 2.45 -77.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284247943.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.272 kcal (2) G-P(sol) polarization free energy of solvation -79.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds