Wall clock time and date at job start Wed Apr 1 2020 00:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99952 * 2 1 4 4 H 1.48500 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47352 * 299.99881 * 3 2 1 6 6 H 1.48500 * 109.47307 * 59.99841 * 3 2 1 7 7 C 1.38950 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99764 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00302 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00427 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47351 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00189 * 179.97438 * 13 12 10 15 15 H 1.09007 * 110.64302 * 323.31165 * 14 13 12 16 16 C 1.55160 * 110.72157 * 86.45380 * 14 13 12 17 17 C 1.54906 * 101.58326 * 153.86307 * 16 14 13 18 18 N 1.47419 * 104.83353 * 322.99440 * 17 16 14 19 19 C 1.34784 * 125.64802 * 204.08948 * 18 17 16 20 20 O 1.21283 * 119.99668 * 185.07717 * 19 18 17 21 21 C 1.50701 * 119.99817 * 5.08282 * 19 18 17 22 22 F 1.39892 * 109.47044 * 50.03411 * 21 19 18 23 23 C 1.52992 * 109.47009 * 290.03199 * 21 19 18 24 24 C 1.53005 * 109.47220 * 180.02562 * 23 21 19 25 25 C 1.52997 * 109.46890 * 59.99838 * 24 23 21 26 26 C 1.52990 * 109.47621 * 300.00318 * 25 24 23 27 27 C 1.53003 * 109.46793 * 170.03451 * 21 19 18 28 28 C 1.47021 * 108.70406 * 24.35312 * 18 17 16 29 29 H 0.97006 * 119.99616 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00253 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47405 * 59.99867 * 12 10 9 32 32 H 1.08997 * 109.47216 * 300.00216 * 12 10 9 33 33 H 1.00900 * 110.99770 * 56.04662 * 13 12 10 34 34 H 1.09001 * 111.00187 * 35.78800 * 16 14 13 35 35 H 1.09004 * 111.03770 * 271.95583 * 16 14 13 36 36 H 1.08997 * 110.36731 * 204.14860 * 17 16 14 37 37 H 1.09004 * 110.45934 * 81.87729 * 17 16 14 38 38 H 1.09002 * 109.47036 * 60.00072 * 23 21 19 39 39 H 1.08994 * 109.47575 * 300.00300 * 23 21 19 40 40 H 1.09003 * 109.46804 * 300.00376 * 24 23 21 41 41 H 1.09000 * 109.47344 * 180.02562 * 24 23 21 42 42 H 1.09003 * 109.46958 * 60.00632 * 25 24 23 43 43 H 1.09005 * 109.46865 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.47433 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.47211 * 300.00159 * 26 25 24 46 46 H 1.09003 * 109.47012 * 299.99695 * 27 21 19 47 47 H 1.08994 * 109.47021 * 60.00172 * 27 21 19 48 48 H 1.08999 * 109.88536 * 118.13455 * 28 18 17 49 49 H 1.09002 * 109.88117 * 239.29592 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 1.4981 -7.2708 -0.0003 15 1 0.5955 -7.2185 0.6087 16 6 1.1581 -7.7110 -1.4488 17 6 1.0950 -9.2515 -1.2990 18 7 2.1616 -9.5810 -0.3361 19 6 2.7866 -10.7707 -0.2329 20 8 3.5873 -10.9597 0.6582 21 6 2.4905 -11.8660 -1.2249 22 9 2.5922 -11.3581 -2.5244 23 6 1.0735 -12.3943 -0.9932 24 6 0.7731 -13.5067 -1.9999 25 6 1.7783 -14.6454 -1.8167 26 6 3.1953 -14.1171 -2.0482 27 6 3.4957 -13.0049 -1.0422 28 6 2.4262 -8.3990 0.4971 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6174 -4.9205 -0.8913 32 1 0.6168 -4.9208 0.8886 33 1 2.8326 -5.9124 0.7815 34 1 1.9469 -7.4178 -2.1415 35 1 0.1950 -7.3093 -1.7640 36 1 1.2867 -9.7340 -2.2574 37 1 0.1241 -9.5569 -0.9088 38 1 0.3574 -11.5829 -1.1233 39 1 0.9942 -12.7900 0.0193 40 1 0.8525 -13.1114 -3.0126 41 1 -0.2366 -13.8829 -1.8352 42 1 1.6989 -15.0407 -0.8039 43 1 1.5640 -15.4381 -2.5335 44 1 3.9115 -14.9283 -1.9172 45 1 3.2747 -13.7218 -3.0609 46 1 4.5053 -12.6284 -1.2072 47 1 3.4164 -13.4005 -0.0297 48 1 2.2107 -8.6257 1.5413 49 1 3.4673 -8.0948 0.3890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317066736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:04 Heat of formation + Delta-G solvation = -126.831286 kcal Electronic energy + Delta-G solvation = -30092.380353 eV Core-core repulsion = 25775.032061 eV Total energy + Delta-G solvation = -4317.348292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.33065 -40.37675 -38.68563 -38.03468 -37.37639 -34.84038 -33.82379 -31.65623 -31.27282 -31.19990 -30.50347 -29.03027 -26.27926 -24.73465 -23.82219 -23.22901 -22.87276 -20.69125 -20.31262 -19.84861 -19.26171 -17.92317 -17.68721 -17.06298 -16.36570 -16.25684 -16.00380 -15.58663 -15.29659 -15.11574 -14.79482 -14.46977 -14.11315 -13.96708 -13.89596 -13.78259 -13.67465 -13.47934 -13.19997 -12.82354 -12.76450 -12.64511 -12.42840 -12.37435 -12.18748 -11.79941 -11.68432 -11.56768 -11.45834 -11.22054 -11.15331 -11.09510 -11.04991 -10.91919 -10.53694 -10.35378 -10.24223 -9.94762 -9.54054 -8.93995 -8.51369 -8.17592 -7.98507 -6.43855 -3.84585 2.12940 2.49889 3.15301 3.26185 3.33595 3.74295 3.87727 3.92038 4.02225 4.04756 4.19690 4.26039 4.41564 4.46531 4.58331 4.62002 4.74172 4.84009 4.93064 4.97232 5.00986 5.05584 5.11475 5.20754 5.28575 5.30164 5.35128 5.43918 5.54017 5.57100 5.57743 5.63230 5.64016 5.70085 5.74536 5.77170 5.78885 5.91291 5.93397 5.99213 6.09582 6.24805 7.10733 7.13979 7.53402 7.53885 7.70406 8.04291 8.58766 9.16001 9.51758 10.02996 10.73880 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.035730 B = 0.001787 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.466339 B =15663.283313 C =15937.213074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.657 5.657 14 C 0.075 3.925 15 H 0.060 0.940 16 C -0.123 4.123 17 C 0.087 3.913 18 N -0.604 5.604 19 C 0.514 3.486 20 O -0.525 6.525 21 C 0.117 3.883 22 F -0.189 7.189 23 C -0.141 4.141 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.123 4.123 28 C 0.106 3.894 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.353 0.647 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -28.633 -3.514 29.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.081 4.081 13 N -0.290 5.290 14 C -0.036 4.036 15 H 0.078 0.922 16 C -0.161 4.161 17 C -0.036 4.036 18 N -0.337 5.337 19 C 0.300 3.700 20 O -0.400 6.400 21 C 0.095 3.905 22 F -0.169 7.169 23 C -0.179 4.179 24 C -0.156 4.156 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.161 4.161 28 C -0.016 4.016 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.174 0.826 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.551 -28.596 -3.724 28.950 hybrid contribution -0.688 1.067 0.828 1.516 sum -3.239 -27.529 -2.896 27.870 Atomic orbital electron populations 1.69622 1.05940 1.28073 1.50665 1.25269 0.95649 0.99754 0.97304 0.85794 0.79734 0.81083 0.77704 1.19200 1.20725 1.20772 1.19761 0.93426 0.82197 1.47460 0.87835 1.41861 1.09197 1.04602 1.64324 1.19774 0.88388 0.84689 0.84617 1.90538 1.13731 1.87025 1.55339 1.21713 0.94264 0.90794 1.01321 1.60150 1.18526 0.99038 1.51303 1.22548 0.95414 0.89176 0.96509 0.92207 1.22882 1.03476 0.92398 0.97380 1.22701 0.90076 0.97173 0.93611 1.48346 1.38052 1.11271 1.36053 1.20520 0.80874 0.82303 0.86306 1.90740 1.34369 1.80084 1.34848 1.21099 0.99243 0.92457 0.77659 1.92852 1.97290 1.88377 1.38419 1.22195 0.93634 1.00148 1.01902 1.21511 0.99512 0.95102 0.99468 1.21593 0.94559 0.97742 1.02172 1.21548 0.97073 0.97708 0.99552 1.21905 0.98462 0.94027 1.01755 1.22090 1.01069 0.84125 0.94367 0.91916 0.77463 0.89444 0.93661 0.82645 0.89007 0.89722 0.89067 0.91125 0.89973 0.89574 0.90959 0.90935 0.91671 0.91402 0.90948 0.91140 0.90098 0.89204 0.91078 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.08 5.29 -10.97 -0.06 -14.14 16 10 C 0.44 10.20 7.82 -10.99 -0.09 10.12 16 11 O -0.58 -15.72 15.78 5.54 0.09 -15.63 16 12 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 13 N -0.66 -10.13 5.93 -106.05 -0.63 -10.76 16 14 C 0.07 0.87 3.23 -65.87 -0.21 0.65 16 15 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 16 C -0.12 -1.26 6.72 -24.58 -0.17 -1.43 16 17 C 0.09 0.77 5.36 -2.53 -0.01 0.76 16 18 N -0.60 -6.84 3.33 -170.52 -0.57 -7.41 16 19 C 0.51 6.30 6.87 -10.98 -0.08 6.22 16 20 O -0.52 -8.05 16.31 5.55 0.09 -7.96 16 21 C 0.12 1.09 0.75 -91.77 -0.07 1.02 16 22 F -0.19 -1.93 13.64 2.25 0.03 -1.90 16 23 C -0.14 -0.96 4.88 -26.73 -0.13 -1.09 16 24 C -0.12 -0.65 5.80 -26.73 -0.16 -0.81 16 25 C -0.12 -0.65 5.92 -26.74 -0.16 -0.81 16 26 C -0.12 -0.77 5.80 -26.76 -0.16 -0.93 16 27 C -0.12 -1.05 4.35 -26.75 -0.12 -1.17 16 28 C 0.11 1.27 6.41 -3.06 -0.02 1.25 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 31 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 32 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.35 5.70 8.15 -39.29 -0.32 5.38 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.78 6.01 -51.93 -0.31 0.47 16 37 H 0.07 0.49 7.43 -51.93 -0.39 0.11 16 38 H 0.08 0.51 5.95 -51.93 -0.31 0.21 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.43 7.80 -51.93 -0.41 0.03 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.49 7.80 -51.93 -0.41 0.08 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.76 7.99 -51.93 -0.41 0.35 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.08 1.14 7.97 -51.93 -0.41 0.72 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -32.81 389.16 -8.96 -41.77 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -7.86 Total: 11.13 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -1.63 Total: 6.67 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.53 Total: -55.90 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: 0.18 Total: -23.59 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.03 Total: -1.90 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.81 -8.96 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317066736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.056 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds