Wall clock time and date at job start Wed Apr 1 2020 00:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99527 * 2 1 4 4 H 1.48500 * 109.47214 * 273.00411 * 3 2 1 5 5 H 1.48499 * 109.47277 * 33.00882 * 3 2 1 6 6 H 1.48503 * 109.46657 * 153.01054 * 3 2 1 7 7 C 1.38807 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00244 * 339.46945 * 7 2 1 9 9 N 1.36942 * 119.99880 * 159.47314 * 7 2 1 10 10 C 1.46926 * 120.63063 * 332.42519 * 9 7 2 11 11 C 1.53192 * 108.77295 * 233.88094 * 10 9 7 12 12 C 1.53040 * 109.31543 * 305.36565 * 11 10 9 13 13 N 1.46498 * 109.46051 * 181.38560 * 12 11 10 14 14 C 1.34776 * 119.99856 * 84.92850 * 13 12 11 15 15 O 1.21342 * 120.00384 * 0.02562 * 14 13 12 16 16 C 1.49455 * 119.99654 * 179.97438 * 14 13 12 17 17 O 1.21349 * 120.00282 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99654 * 179.97438 * 16 14 13 19 19 C 1.46498 * 119.99856 * 180.02562 * 18 16 14 20 20 H 1.09004 * 109.47151 * 324.99880 * 19 18 16 21 21 C 1.52995 * 109.47553 * 85.00241 * 19 18 16 22 22 C 1.52997 * 109.47545 * 180.02562 * 21 19 18 23 23 C 1.53005 * 109.46720 * 299.99531 * 22 21 19 24 24 C 1.53000 * 109.47106 * 60.00493 * 23 22 21 25 25 C 1.53001 * 109.46794 * 299.99727 * 24 23 22 26 26 H 1.09003 * 109.47293 * 180.02562 * 25 24 23 27 27 F 1.39900 * 109.46979 * 299.99993 * 25 24 23 28 28 C 1.53039 * 109.53902 * 61.36259 * 12 11 10 29 29 C 1.46924 * 120.62968 * 152.70010 * 9 7 2 30 30 H 0.96999 * 120.00261 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58351 * 353.66692 * 10 9 7 32 32 H 1.08994 * 109.58658 * 114.09625 * 10 9 7 33 33 H 1.09000 * 109.49889 * 185.40555 * 11 10 9 34 34 H 1.09006 * 109.49777 * 65.31823 * 11 10 9 35 35 H 1.08997 * 109.45430 * 301.34267 * 12 11 10 36 36 H 0.96999 * 119.99932 * 264.93313 * 13 12 11 37 37 H 0.96999 * 120.00212 * 0.02562 * 18 16 14 38 38 H 1.09005 * 109.46969 * 300.00028 * 21 19 18 39 39 H 1.09004 * 109.47187 * 59.99661 * 21 19 18 40 40 H 1.08995 * 109.47231 * 180.02562 * 22 21 19 41 41 H 1.08996 * 109.47436 * 59.99835 * 22 21 19 42 42 H 1.08991 * 109.47484 * 299.99811 * 23 22 21 43 43 H 1.09004 * 109.46585 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.47403 * 179.97438 * 24 23 22 45 45 H 1.09008 * 109.47218 * 59.99287 * 24 23 22 46 46 H 1.08996 * 109.50032 * 178.68282 * 28 12 11 47 47 H 1.09004 * 109.49604 * 58.58830 * 28 12 11 48 48 H 1.09000 * 109.59189 * 245.90180 * 29 9 7 49 49 H 1.09000 * 109.59004 * 6.33096 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4340 2.0832 -1.3981 5 1 1.4808 2.6335 0.7627 6 1 3.5781 1.4227 0.6354 7 6 2.0103 -1.2021 -0.0005 8 1 1.5218 -2.1078 0.3270 9 7 3.3145 -1.2395 -0.4164 10 6 3.8189 -0.2594 -1.3878 11 6 4.4602 -1.0108 -2.5587 12 6 5.5256 -1.9695 -2.0221 13 7 6.1640 -2.6658 -3.1419 14 6 7.1933 -2.0903 -3.7945 15 8 7.5915 -0.9957 -3.4544 16 6 7.8449 -2.8009 -4.9364 17 8 7.4471 -3.8958 -5.2763 18 7 8.8738 -2.2252 -5.5894 19 6 9.5123 -2.9215 -6.7091 20 1 9.5193 -3.9938 -6.5137 21 6 8.7316 -2.6425 -7.9950 22 6 9.3980 -3.3702 -9.1643 23 6 10.8359 -2.8716 -9.3224 24 6 11.6167 -3.1507 -8.0365 25 6 10.9502 -2.4230 -6.8672 26 1 11.5066 -2.6214 -5.9511 27 9 10.9417 -1.0468 -7.1183 28 6 4.8711 -2.9932 -1.0917 29 6 4.2344 -2.2642 0.0958 30 1 -0.4850 0.8400 0.0004 31 1 2.9930 0.3507 -1.7536 32 1 4.5635 0.3779 -0.9109 33 1 4.9231 -0.2965 -3.2396 34 1 3.6954 -1.5774 -3.0900 35 1 6.2769 -1.4051 -1.4699 36 1 5.8459 -3.5409 -3.4136 37 1 9.1916 -1.3499 -5.3180 38 1 7.7073 -2.9981 -7.8826 39 1 8.7246 -1.5702 -8.1905 40 1 8.8421 -3.1711 -10.0805 41 1 9.4046 -4.4425 -8.9687 42 1 10.8293 -1.7995 -9.5180 43 1 11.3108 -3.3904 -10.1552 44 1 12.6411 -2.7959 -8.1492 45 1 11.6232 -4.2230 -7.8408 46 1 5.6265 -3.6899 -0.7284 47 1 4.1024 -3.5411 -1.6368 48 1 5.0130 -1.7905 0.6937 49 1 3.6828 -2.9769 0.7089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331221719.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:29 Heat of formation + Delta-G solvation = -111.935225 kcal Electronic energy + Delta-G solvation = -30396.882444 eV Core-core repulsion = 26080.180094 eV Total energy + Delta-G solvation = -4316.702350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.20019 -40.87043 -39.26307 -37.98356 -37.55672 -35.14648 -34.34501 -32.20543 -31.07801 -30.47412 -30.27888 -29.91187 -25.93389 -24.37308 -23.32401 -22.91293 -22.63520 -21.58046 -20.60210 -20.26151 -19.77264 -18.54995 -17.33718 -16.90064 -16.83108 -16.29523 -16.06052 -15.79831 -15.66087 -15.33500 -14.84173 -14.50849 -14.27528 -14.15456 -14.00742 -13.88560 -13.79596 -13.35751 -13.16236 -12.97283 -12.87418 -12.40858 -12.38158 -12.17655 -12.00430 -11.87725 -11.83705 -11.70372 -11.16754 -11.11265 -10.94860 -10.86999 -10.77200 -10.65166 -10.19436 -10.10825 -9.99934 -9.62891 -9.58257 -9.52370 -8.99252 -8.63748 -7.02010 -5.96052 -3.32752 1.29497 2.14915 3.10105 3.33631 3.43991 3.49740 3.52862 3.80020 3.99342 4.14936 4.23176 4.35513 4.52742 4.53027 4.58400 4.77441 4.82462 4.85588 4.91920 5.07198 5.17327 5.23660 5.24165 5.36810 5.39637 5.48222 5.54283 5.57828 5.65990 5.74265 5.76536 5.83235 5.94772 5.96082 5.98964 6.09751 6.22781 6.32984 6.50627 6.52610 6.61497 6.63750 6.77531 6.87531 7.28355 7.59268 7.93313 7.94438 8.31117 8.91494 9.70287 10.06977 11.19627 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.002149 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.251741 B =13027.662994 C =13299.437300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.142 4.142 12 C 0.148 3.852 13 N -0.690 5.690 14 C 0.503 3.497 15 O -0.521 6.521 16 C 0.512 3.488 17 O -0.519 6.519 18 N -0.701 5.701 19 C 0.120 3.880 20 H 0.108 0.892 21 C -0.134 4.134 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.142 4.142 25 C 0.086 3.914 26 H 0.091 0.909 27 F -0.205 7.205 28 C -0.142 4.142 29 C 0.152 3.848 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.409 0.591 37 H 0.416 0.584 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.026 0.974 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.426 -8.640 -17.083 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.390 4.390 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.183 4.183 12 C 0.045 3.955 13 N -0.341 5.341 14 C 0.283 3.717 15 O -0.397 6.397 16 C 0.293 3.707 17 O -0.394 6.394 18 N -0.354 5.354 19 C 0.016 3.984 20 H 0.126 0.874 21 C -0.172 4.172 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.181 4.181 25 C 0.049 3.951 26 H 0.109 0.891 27 F -0.186 7.186 28 C -0.182 4.182 29 C 0.026 3.974 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.245 0.755 37 H 0.253 0.747 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.044 0.956 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.236 -8.521 -17.025 30.819 hybrid contribution 0.386 1.101 -0.102 1.171 sum 24.621 -7.420 -17.127 30.897 Atomic orbital electron populations 1.69836 1.05725 1.26600 1.52844 1.25282 0.95238 0.97638 0.99387 0.86966 0.80088 0.84629 0.77097 1.21584 1.23105 1.19450 1.18905 0.84834 0.94780 1.40438 0.89606 1.44405 1.08712 1.33310 1.46567 1.21331 0.97316 0.92057 0.89040 1.22426 0.97557 0.98617 0.99659 1.21192 0.94667 0.93924 0.85700 1.46129 1.32224 1.22532 1.33243 1.19973 0.81735 0.86219 0.83771 1.90778 1.63318 1.19668 1.65897 1.20368 0.80868 0.85886 0.83594 1.90757 1.62234 1.19884 1.66505 1.45759 1.33779 1.23157 1.32740 1.21672 0.91227 0.98929 0.86622 0.87405 1.21936 1.00082 1.01986 0.93227 1.21519 0.95573 1.00249 0.98196 1.21565 0.95378 1.02331 0.96905 1.22112 1.00110 1.01458 0.94385 1.21867 0.96129 0.76873 1.00245 0.89066 1.92831 1.97542 1.32408 1.95801 1.22369 0.99761 0.97570 0.98470 1.20868 0.92544 0.91456 0.92567 0.92740 0.90577 0.95331 0.92267 0.91305 0.89419 0.75478 0.74704 0.90581 0.90782 0.91072 0.91413 0.91084 0.91108 0.90057 0.89665 0.91876 0.91052 0.95568 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.73 13.97 55.49 0.78 -26.96 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 22.50 24.35 -169.99 -4.14 18.36 16 4 H -0.29 -7.15 6.62 56.52 0.37 -6.77 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.76 6.63 56.52 0.37 -6.39 16 7 C -0.26 -7.20 10.03 -15.06 -0.15 -7.35 16 8 H 0.09 2.51 8.05 -52.49 -0.42 2.08 16 9 N -0.61 -14.12 2.77 -172.33 -0.48 -14.60 16 10 C 0.13 2.83 4.20 -3.71 -0.02 2.81 16 11 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 12 C 0.15 2.34 2.42 -67.89 -0.16 2.17 16 13 N -0.69 -9.39 5.07 -54.20 -0.27 -9.67 16 14 C 0.50 7.04 7.85 -11.58 -0.09 6.95 16 15 O -0.52 -8.47 16.14 5.50 0.09 -8.38 16 16 C 0.51 6.23 7.85 -11.58 -0.09 6.14 16 17 O -0.52 -7.01 16.14 5.50 0.09 -6.92 16 18 N -0.70 -6.85 5.05 -54.23 -0.27 -7.13 16 19 C 0.12 0.93 2.27 -67.93 -0.15 0.78 16 20 H 0.11 0.84 7.58 -51.93 -0.39 0.44 16 21 C -0.13 -1.04 5.37 -26.73 -0.14 -1.18 16 22 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 23 C -0.12 -0.61 5.80 -26.73 -0.16 -0.77 16 24 C -0.14 -0.64 5.72 -26.73 -0.15 -0.79 16 25 C 0.09 0.53 3.68 -26.73 -0.10 0.43 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 F -0.20 -1.75 15.69 2.25 0.04 -1.71 16 28 C -0.14 -2.16 5.55 -26.61 -0.15 -2.30 16 29 C 0.15 2.85 6.52 -3.71 -0.02 2.83 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.08 1.84 4.49 -51.93 -0.23 1.61 16 32 H 0.03 0.63 7.09 -51.93 -0.37 0.26 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 36 H 0.41 4.97 8.07 -40.82 -0.33 4.64 16 37 H 0.42 4.01 7.78 -40.82 -0.32 3.69 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.63 7.80 -51.93 -0.41 0.22 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.42 7.80 -51.93 -0.41 0.01 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -32.34 383.81 -8.12 -40.46 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.94 Total: 4.04 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -1.79 Total: 6.71 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.25 Total: -58.35 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.18 Total: -15.30 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.14 Total: 18.36 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.34 -8.12 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331221719.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.476 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds