Wall clock time and date at job start Wed Apr 1 2020 00:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99527 * 2 1 4 4 H 1.48500 * 109.47214 * 273.00411 * 3 2 1 5 5 H 1.48499 * 109.47277 * 33.00882 * 3 2 1 6 6 H 1.48503 * 109.46657 * 153.01054 * 3 2 1 7 7 C 1.38807 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00244 * 339.46945 * 7 2 1 9 9 N 1.36942 * 119.99880 * 159.47314 * 7 2 1 10 10 C 1.46926 * 120.63063 * 332.42519 * 9 7 2 11 11 C 1.53192 * 108.77295 * 233.88094 * 10 9 7 12 12 C 1.53040 * 109.31543 * 305.36565 * 11 10 9 13 13 N 1.46498 * 109.46051 * 181.38560 * 12 11 10 14 14 C 1.34776 * 119.99856 * 84.92850 * 13 12 11 15 15 O 1.21342 * 120.00384 * 0.02562 * 14 13 12 16 16 C 1.49455 * 119.99654 * 179.97438 * 14 13 12 17 17 O 1.21349 * 120.00282 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99654 * 179.97438 * 16 14 13 19 19 C 1.46498 * 119.99856 * 180.02562 * 18 16 14 20 20 H 1.09004 * 109.47151 * 324.99880 * 19 18 16 21 21 C 1.52995 * 109.47553 * 85.00241 * 19 18 16 22 22 C 1.52997 * 109.47545 * 180.02562 * 21 19 18 23 23 C 1.53005 * 109.46720 * 299.99531 * 22 21 19 24 24 C 1.53000 * 109.47106 * 60.00493 * 23 22 21 25 25 C 1.53001 * 109.46794 * 299.99727 * 24 23 22 26 26 H 1.09003 * 109.47293 * 180.02562 * 25 24 23 27 27 F 1.39900 * 109.46979 * 299.99993 * 25 24 23 28 28 C 1.53039 * 109.53902 * 61.36259 * 12 11 10 29 29 C 1.46924 * 120.62968 * 152.70010 * 9 7 2 30 30 H 0.96999 * 120.00261 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58351 * 353.66692 * 10 9 7 32 32 H 1.08994 * 109.58658 * 114.09625 * 10 9 7 33 33 H 1.09000 * 109.49889 * 185.40555 * 11 10 9 34 34 H 1.09006 * 109.49777 * 65.31823 * 11 10 9 35 35 H 1.08997 * 109.45430 * 301.34267 * 12 11 10 36 36 H 0.96999 * 119.99932 * 264.93313 * 13 12 11 37 37 H 0.96999 * 120.00212 * 0.02562 * 18 16 14 38 38 H 1.09005 * 109.46969 * 300.00028 * 21 19 18 39 39 H 1.09004 * 109.47187 * 59.99661 * 21 19 18 40 40 H 1.08995 * 109.47231 * 180.02562 * 22 21 19 41 41 H 1.08996 * 109.47436 * 59.99835 * 22 21 19 42 42 H 1.08991 * 109.47484 * 299.99811 * 23 22 21 43 43 H 1.09004 * 109.46585 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.47403 * 179.97438 * 24 23 22 45 45 H 1.09008 * 109.47218 * 59.99287 * 24 23 22 46 46 H 1.08996 * 109.50032 * 178.68282 * 28 12 11 47 47 H 1.09004 * 109.49604 * 58.58830 * 28 12 11 48 48 H 1.09000 * 109.59189 * 245.90180 * 29 9 7 49 49 H 1.09000 * 109.59004 * 6.33096 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4340 2.0832 -1.3981 5 1 1.4808 2.6335 0.7627 6 1 3.5781 1.4227 0.6354 7 6 2.0103 -1.2021 -0.0005 8 1 1.5218 -2.1078 0.3270 9 7 3.3145 -1.2395 -0.4164 10 6 3.8189 -0.2594 -1.3878 11 6 4.4602 -1.0108 -2.5587 12 6 5.5256 -1.9695 -2.0221 13 7 6.1640 -2.6658 -3.1419 14 6 7.1933 -2.0903 -3.7945 15 8 7.5915 -0.9957 -3.4544 16 6 7.8449 -2.8009 -4.9364 17 8 7.4471 -3.8958 -5.2763 18 7 8.8738 -2.2252 -5.5894 19 6 9.5123 -2.9215 -6.7091 20 1 9.5193 -3.9938 -6.5137 21 6 8.7316 -2.6425 -7.9950 22 6 9.3980 -3.3702 -9.1643 23 6 10.8359 -2.8716 -9.3224 24 6 11.6167 -3.1507 -8.0365 25 6 10.9502 -2.4230 -6.8672 26 1 11.5066 -2.6214 -5.9511 27 9 10.9417 -1.0468 -7.1183 28 6 4.8711 -2.9932 -1.0917 29 6 4.2344 -2.2642 0.0958 30 1 -0.4850 0.8400 0.0004 31 1 2.9930 0.3507 -1.7536 32 1 4.5635 0.3779 -0.9109 33 1 4.9231 -0.2965 -3.2396 34 1 3.6954 -1.5774 -3.0900 35 1 6.2769 -1.4051 -1.4699 36 1 5.8459 -3.5409 -3.4136 37 1 9.1916 -1.3499 -5.3180 38 1 7.7073 -2.9981 -7.8826 39 1 8.7246 -1.5702 -8.1905 40 1 8.8421 -3.1711 -10.0805 41 1 9.4046 -4.4425 -8.9687 42 1 10.8293 -1.7995 -9.5180 43 1 11.3108 -3.3904 -10.1552 44 1 12.6411 -2.7959 -8.1492 45 1 11.6232 -4.2230 -7.8408 46 1 5.6265 -3.6899 -0.7284 47 1 4.1024 -3.5411 -1.6368 48 1 5.0130 -1.7905 0.6937 49 1 3.6828 -2.9769 0.7089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331221719.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:28 Heat of formation + Delta-G solvation = -134.854160 kcal Electronic energy + Delta-G solvation = -30397.876283 eV Core-core repulsion = 26080.180094 eV Total energy + Delta-G solvation = -4317.696190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.77280 -41.90389 -40.33134 -39.12947 -38.52511 -36.39297 -35.34801 -34.06403 -32.01586 -31.90309 -31.54336 -30.59913 -27.39718 -25.71193 -24.47103 -23.89941 -23.65077 -22.76226 -21.54759 -21.35375 -20.74140 -19.61185 -18.78869 -18.19696 -17.59719 -17.44812 -17.07203 -16.78426 -16.63305 -16.23438 -15.97828 -15.89448 -15.41968 -15.38049 -15.27432 -14.82243 -14.73060 -14.54235 -14.38748 -14.14659 -13.91035 -13.88003 -13.46095 -13.43869 -12.96479 -12.91826 -12.71212 -12.65709 -12.55875 -12.25059 -12.24164 -12.04436 -11.79814 -11.59700 -11.52905 -11.49013 -11.42981 -11.31405 -10.83511 -10.66931 -10.37080 -10.24235 -8.97661 -8.17230 -5.49100 0.25943 1.18665 1.29480 1.40350 1.48877 2.05911 2.40608 2.48320 3.03390 3.24080 3.29791 3.36837 3.52849 3.71827 3.74323 3.76714 3.86960 4.05124 4.10717 4.17237 4.27742 4.28043 4.30929 4.42081 4.43212 4.61764 4.64780 4.72363 4.76889 4.78779 4.89098 4.89613 4.96306 5.03680 5.06441 5.10529 5.13049 5.13343 5.22650 5.25065 5.29178 5.40177 5.45220 5.82894 5.86631 6.12718 6.26554 6.63917 6.87184 6.89972 7.60807 8.01359 9.02275 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.002149 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.251741 B =13027.662994 C =13299.437300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.035 4.035 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.310 1.310 6 H -0.261 1.261 7 C -0.244 4.244 8 H 0.059 0.941 9 N -0.620 5.620 10 C 0.125 3.875 11 C -0.133 4.133 12 C 0.157 3.843 13 N -0.681 5.681 14 C 0.504 3.496 15 O -0.544 6.544 16 C 0.518 3.482 17 O -0.533 6.533 18 N -0.691 5.691 19 C 0.118 3.882 20 H 0.113 0.887 21 C -0.132 4.132 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.139 4.139 25 C 0.084 3.916 26 H 0.107 0.893 27 F -0.219 7.219 28 C -0.128 4.128 29 C 0.145 3.855 30 H 0.261 0.739 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.419 0.581 37 H 0.417 0.583 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.069 0.931 48 H 0.040 0.960 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.649 -9.724 -18.161 34.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.229 4.229 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.239 1.239 6 H -0.185 1.185 7 C -0.374 4.374 8 H 0.077 0.923 9 N -0.344 5.344 10 C 0.000 4.000 11 C -0.173 4.173 12 C 0.053 3.947 13 N -0.333 5.333 14 C 0.285 3.715 15 O -0.421 6.421 16 C 0.298 3.702 17 O -0.410 6.410 18 N -0.343 5.343 19 C 0.014 3.986 20 H 0.131 0.869 21 C -0.171 4.171 22 C -0.152 4.152 23 C -0.161 4.161 24 C -0.177 4.177 25 C 0.048 3.952 26 H 0.125 0.875 27 F -0.200 7.200 28 C -0.167 4.167 29 C 0.020 3.980 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.257 0.743 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.121 0.879 46 H 0.117 0.883 47 H 0.088 0.912 48 H 0.058 0.942 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 27.530 -9.632 -18.134 34.344 hybrid contribution -0.579 1.360 0.203 1.492 sum 26.951 -8.272 -17.930 33.411 Atomic orbital electron populations 1.69956 1.07263 1.27113 1.55790 1.25871 0.95802 1.00751 1.00515 0.86006 0.78921 0.80779 0.77308 1.20712 1.23939 1.18495 1.18884 0.86592 0.93598 1.38316 0.92316 1.44536 1.08014 1.34570 1.47319 1.21302 0.96606 0.92132 0.90007 1.22264 0.98030 0.98923 0.98110 1.20932 0.93818 0.93704 0.86211 1.45917 1.32009 1.22722 1.32666 1.20288 0.81465 0.85885 0.83904 1.90771 1.64024 1.20729 1.66619 1.19985 0.81308 0.85600 0.83291 1.90758 1.62892 1.20392 1.66933 1.45811 1.32799 1.23073 1.32620 1.21873 0.92096 0.99037 0.85616 0.86917 1.21899 0.99383 1.01508 0.94280 1.21513 0.96030 1.00431 0.97238 1.21560 0.94920 1.01711 0.97870 1.22144 1.00220 1.02267 0.93088 1.22049 0.95164 0.76118 1.01915 0.87546 1.92807 1.97533 1.33737 1.95969 1.22201 1.00372 0.97360 0.96817 1.21102 0.92111 0.90605 0.94229 0.93006 0.93119 0.94916 0.91880 0.91858 0.89782 0.74342 0.74548 0.92421 0.91864 0.90895 0.90567 0.92312 0.89559 0.88997 0.87945 0.88276 0.91190 0.94218 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.11 13.97 21.65 0.30 -59.81 16 2 C -0.03 -2.02 5.23 84.86 0.44 -1.58 16 3 Si 0.94 47.20 24.35 68.60 1.67 48.87 16 4 H -0.28 -13.52 6.62 99.48 0.66 -12.86 16 5 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 6 H -0.26 -12.51 6.63 99.48 0.66 -11.85 16 7 C -0.24 -13.64 10.03 84.03 0.84 -12.80 16 8 H 0.06 3.54 8.05 -2.91 -0.02 3.51 16 9 N -0.62 -28.43 2.77 -699.11 -1.93 -30.36 16 10 C 0.13 5.38 4.20 86.36 0.36 5.74 16 11 C -0.13 -4.67 5.65 30.67 0.17 -4.50 16 12 C 0.16 4.59 2.42 45.02 0.11 4.69 16 13 N -0.68 -16.96 5.07 -443.75 -2.25 -19.21 16 14 C 0.50 13.15 7.85 87.27 0.69 13.84 16 15 O -0.54 -16.80 16.14 -3.22 -0.05 -16.85 16 16 C 0.52 11.74 7.85 87.27 0.69 12.42 16 17 O -0.53 -13.46 16.14 -3.25 -0.05 -13.51 16 18 N -0.69 -12.47 5.05 -443.86 -2.24 -14.72 16 19 C 0.12 1.62 2.27 44.99 0.10 1.72 16 20 H 0.11 1.50 7.58 -2.39 -0.02 1.48 16 21 C -0.13 -1.93 5.37 30.59 0.16 -1.76 16 22 C -0.11 -1.11 5.92 30.59 0.18 -0.93 16 23 C -0.12 -0.95 5.80 30.60 0.18 -0.77 16 24 C -0.14 -0.85 5.72 30.59 0.17 -0.68 16 25 C 0.08 0.86 3.68 30.60 0.11 0.97 16 26 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 27 F -0.22 -3.42 15.69 44.97 0.71 -2.72 16 28 C -0.13 -3.53 5.55 30.67 0.17 -3.36 16 29 C 0.14 5.14 6.52 86.36 0.56 5.70 16 30 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.05 2.43 4.49 -2.39 -0.01 2.42 16 32 H 0.03 1.39 7.09 -2.39 -0.02 1.37 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 2.28 8.14 -2.38 -0.02 2.27 16 35 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 36 H 0.42 9.09 8.07 -92.71 -0.75 8.34 16 37 H 0.42 7.48 7.78 -92.71 -0.72 6.76 16 38 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.06 1.04 7.80 -2.39 -0.02 1.03 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.61 7.80 -2.39 -0.02 0.59 16 43 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 44 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 46 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.07 2.47 7.93 -2.39 -0.02 2.45 16 Total: -1.00 -70.56 383.81 0.50 -70.06 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.59 Total: 19.54 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 4.95 Total: 18.72 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -6.12 Total: -124.10 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.10 Total: -30.37 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.71 Total: -2.72 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.67 Total: 48.87 kcal Total: -70.56 0.50 -70.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331221719.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.799 kcal (2) G-P(sol) polarization free energy of solvation -70.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds