Wall clock time and date at job start Wed Apr 1 2020 00:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00423 * 2 1 4 4 H 1.48500 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46844 * 300.00006 * 3 2 1 6 6 H 1.48494 * 109.47059 * 59.99793 * 3 2 1 7 7 C 1.37881 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99885 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.46980 * 175.38761 * 9 7 2 11 11 C 1.46902 * 111.00441 * 295.22255 * 10 9 7 12 12 C 1.53239 * 109.34338 * 187.25520 * 11 10 9 13 13 N 1.47079 * 108.51955 * 306.17000 * 12 11 10 14 14 C 1.34780 * 120.88454 * 231.18709 * 13 12 11 15 15 O 1.21356 * 119.99645 * 8.21367 * 14 13 12 16 16 C 1.49451 * 120.00319 * 188.21438 * 14 13 12 17 17 O 1.21344 * 119.99918 * 6.36859 * 16 14 13 18 18 N 1.34776 * 119.99459 * 186.09936 * 16 14 13 19 19 C 1.46501 * 119.99298 * 180.27584 * 18 16 14 20 20 H 1.08994 * 109.47777 * 34.99809 * 19 18 16 21 21 C 1.53001 * 109.47283 * 274.99468 * 19 18 16 22 22 C 1.52991 * 109.47169 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.47511 * 60.00383 * 22 21 19 24 24 C 1.53008 * 109.46878 * 299.99583 * 23 22 21 25 25 C 1.53005 * 109.46782 * 60.00060 * 24 23 22 26 26 H 1.08995 * 109.47122 * 60.00035 * 25 24 23 27 27 F 1.39898 * 109.46745 * 180.02562 * 25 24 23 28 28 C 1.47084 * 118.23946 * 51.45721 * 13 12 11 29 29 C 1.46904 * 110.99978 * 59.52414 * 10 9 7 30 30 H 0.97000 * 119.99625 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46604 * 55.39310 * 9 7 2 32 32 H 1.08996 * 109.47429 * 295.39388 * 9 7 2 33 33 H 1.09004 * 109.49309 * 67.28906 * 11 10 9 34 34 H 1.08996 * 109.48954 * 307.21468 * 11 10 9 35 35 H 1.08996 * 109.62845 * 186.46280 * 12 11 10 36 36 H 1.08999 * 109.78834 * 65.97371 * 12 11 10 37 37 H 0.97000 * 120.00413 * 0.27140 * 18 16 14 38 38 H 1.09002 * 109.46714 * 300.00221 * 21 19 18 39 39 H 1.08998 * 109.47207 * 60.00177 * 21 19 18 40 40 H 1.09001 * 109.47689 * 299.99756 * 22 21 19 41 41 H 1.09005 * 109.46907 * 179.97438 * 22 21 19 42 42 H 1.08996 * 109.47452 * 180.02562 * 23 22 21 43 43 H 1.08995 * 109.47322 * 59.99728 * 23 22 21 44 44 H 1.08995 * 109.47263 * 300.00181 * 24 23 22 45 45 H 1.08996 * 109.47046 * 179.97438 * 24 23 22 46 46 H 1.08992 * 109.62782 * 68.24978 * 28 13 12 47 47 H 1.08999 * 109.63112 * 188.83310 * 28 13 12 48 48 H 1.08996 * 109.49467 * 292.70350 * 29 10 9 49 49 H 1.09000 * 109.49053 * 52.78698 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2015 -3.6135 -0.1125 11 6 2.8991 -3.5826 -1.4050 12 6 3.7420 -4.8533 -1.5573 13 7 4.6167 -4.9773 -0.3814 14 6 5.9424 -5.1750 -0.5230 15 8 6.4523 -5.1044 -1.6219 16 6 6.7843 -5.4810 0.6732 17 8 6.2610 -5.6659 1.7523 18 7 8.1245 -5.5571 0.5523 19 6 8.9493 -5.8630 1.7237 20 1 8.4176 -6.5610 2.3703 21 6 9.2391 -4.5735 2.4944 22 6 10.1010 -4.8929 3.7174 23 6 11.4193 -5.5219 3.2621 24 6 11.1296 -6.8116 2.4914 25 6 10.2676 -6.4921 1.2683 26 1 10.7991 -5.7940 0.6217 27 9 10.0023 -7.6714 0.5641 28 6 4.0055 -4.8860 0.9533 29 6 3.1530 -3.6082 1.0067 30 1 -0.4849 0.8401 0.0004 31 1 0.5635 -2.5217 -0.8461 32 1 0.6879 -2.5937 0.9280 33 1 3.5484 -2.7081 -1.4472 34 1 2.1679 -3.5324 -2.2117 35 1 4.3494 -4.7837 -2.4597 36 1 3.0891 -5.7237 -1.6215 37 1 8.5428 -5.4093 -0.3103 38 1 9.7709 -3.8755 1.8478 39 1 8.2999 -4.1250 2.8185 40 1 9.5696 -5.5911 4.3642 41 1 10.3078 -3.9741 4.2662 42 1 12.0332 -5.7499 4.1334 43 1 11.9507 -4.8238 2.6154 44 1 10.5982 -7.5097 3.1381 45 1 12.0687 -7.2595 2.1667 46 1 3.3751 -5.7579 1.1277 47 1 4.7871 -4.8382 1.7115 48 1 3.7988 -2.7334 0.9310 49 1 2.6060 -3.5766 1.9490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333064637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:26 Heat of formation + Delta-G solvation = -111.103662 kcal Electronic energy + Delta-G solvation = -30889.397187 eV Core-core repulsion = 26572.730896 eV Total energy + Delta-G solvation = -4316.666291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.05182 -40.94433 -39.24726 -38.01547 -37.56321 -35.04035 -34.10502 -32.32077 -30.86833 -30.69274 -29.84431 -28.32930 -25.84940 -24.57049 -23.34088 -23.05787 -22.62059 -21.73173 -20.91024 -20.38791 -19.32087 -17.75502 -17.18460 -16.69061 -16.44285 -16.23117 -16.00288 -15.58636 -15.44889 -14.94365 -14.81408 -14.56920 -14.41346 -14.18671 -14.14123 -13.85271 -13.70233 -13.50893 -13.37784 -13.02290 -12.72971 -12.35733 -12.21144 -11.87489 -11.81346 -11.64614 -11.45719 -11.26334 -11.16632 -11.03493 -11.01877 -10.89552 -10.73370 -10.66929 -10.61947 -10.26712 -9.94547 -9.69510 -9.51540 -9.08706 -8.53840 -8.47722 -7.26339 -6.07519 -4.16859 1.40436 2.23926 3.18853 3.23231 3.31634 3.35072 3.42396 3.80377 4.00741 4.19108 4.30201 4.32003 4.36849 4.53002 4.59365 4.79544 4.85877 4.96293 4.98952 5.18610 5.22876 5.27319 5.40443 5.47033 5.50075 5.52769 5.57045 5.64151 5.67487 5.76832 5.79606 5.83337 5.91203 5.94912 6.01946 6.28674 6.45614 6.58165 6.61923 6.71865 6.90284 7.20059 7.38164 7.47327 7.67175 7.84584 7.95403 8.00805 8.18045 8.23851 8.93204 9.50526 10.97628 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002640 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.091437 B =10601.517909 C =11594.454750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.187 3.813 10 N -0.542 5.542 11 C 0.051 3.949 12 C 0.111 3.889 13 N -0.569 5.569 14 C 0.503 3.497 15 O -0.534 6.534 16 C 0.515 3.485 17 O -0.507 6.507 18 N -0.699 5.699 19 C 0.120 3.880 20 H 0.104 0.896 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.142 4.142 25 C 0.086 3.914 26 H 0.090 0.910 27 F -0.207 7.207 28 C 0.077 3.923 29 C 0.049 3.951 30 H 0.262 0.738 31 H 0.035 0.965 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.129 0.871 48 H 0.041 0.959 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.099 -13.033 5.223 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.266 5.266 11 C -0.078 4.078 12 C -0.011 4.011 13 N -0.302 5.302 14 C 0.285 3.715 15 O -0.412 6.412 16 C 0.297 3.703 17 O -0.382 6.382 18 N -0.352 5.352 19 C 0.015 3.985 20 H 0.122 0.878 21 C -0.170 4.170 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.180 4.180 25 C 0.049 3.951 26 H 0.108 0.892 27 F -0.187 7.187 28 C -0.045 4.045 29 C -0.080 4.080 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.249 0.751 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.146 0.854 48 H 0.060 0.940 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 21.515 -13.483 5.414 25.962 hybrid contribution 0.882 1.871 -0.534 2.136 sum 22.397 -11.612 4.880 25.696 Atomic orbital electron populations 1.69947 1.05993 1.26788 1.50066 1.24957 0.94764 0.99161 0.94837 0.86596 0.80101 0.83951 0.77720 1.19928 1.20895 1.20871 1.21778 0.93300 0.92110 1.51806 0.92569 1.19773 0.90712 0.85322 0.98038 1.62518 1.16667 1.46977 1.00465 1.22220 0.96724 0.94835 0.94012 1.22032 0.91983 0.99552 0.87527 1.48106 1.05485 1.66730 1.09832 1.19875 0.83358 0.79491 0.88749 1.90730 1.72188 1.51489 1.26792 1.20318 0.83046 0.77632 0.89259 1.90546 1.71281 1.47842 1.28581 1.45736 1.05797 1.70559 1.13079 1.21692 0.90652 0.98333 0.87775 0.87812 1.21940 1.01572 0.96376 0.97075 1.21554 0.95406 1.01576 0.97293 1.21539 0.97871 0.96038 1.00287 1.22114 1.00369 0.99424 0.96112 1.21884 0.95663 0.83760 0.93815 0.89190 1.92861 1.95263 1.50095 1.80503 1.23124 0.98947 0.99155 0.83268 1.22378 0.94539 0.95075 0.96002 0.92805 0.94658 0.95140 0.93851 0.90104 0.89241 0.90631 0.75058 0.91051 0.90069 0.91183 0.90862 0.90800 0.91334 0.90224 0.90093 0.90971 0.85367 0.94033 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.55 -14.94 7.76 -34.44 -0.27 -15.21 16 8 H 0.06 1.54 5.88 -52.48 -0.31 1.23 16 9 C 0.19 4.71 5.11 -4.98 -0.03 4.69 16 10 N -0.54 -11.36 4.83 -235.46 -1.14 -12.50 16 11 C 0.05 0.99 5.25 -3.70 -0.02 0.97 16 12 C 0.11 1.80 6.61 -3.60 -0.02 1.78 16 13 N -0.57 -9.35 3.00 -172.69 -0.52 -9.87 16 14 C 0.50 8.00 7.75 -11.58 -0.09 7.91 16 15 O -0.53 -9.20 15.96 5.49 0.09 -9.12 16 16 C 0.52 7.11 7.71 -11.59 -0.09 7.02 16 17 O -0.51 -7.54 12.85 5.50 0.07 -7.47 16 18 N -0.70 -7.54 4.99 -54.24 -0.27 -7.81 16 19 C 0.12 1.04 2.21 -67.93 -0.15 0.89 16 20 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 21 C -0.13 -0.99 5.49 -26.73 -0.15 -1.13 16 22 C -0.12 -0.68 5.92 -26.74 -0.16 -0.84 16 23 C -0.12 -0.53 5.92 -26.73 -0.16 -0.69 16 24 C -0.14 -0.74 5.66 -26.72 -0.15 -0.90 16 25 C 0.09 0.61 3.37 -26.73 -0.09 0.52 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 F -0.21 -2.07 17.00 2.25 0.04 -2.03 16 28 C 0.08 1.24 6.14 -3.36 -0.02 1.22 16 29 C 0.05 0.95 5.17 -3.46 -0.02 0.93 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.93 7.10 -51.93 -0.37 0.56 16 34 H 0.08 1.52 8.06 -51.93 -0.42 1.10 16 35 H 0.09 1.41 7.05 -51.93 -0.37 1.05 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.41 4.11 8.09 -40.82 -0.33 3.78 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.13 2.03 4.43 -54.27 -0.24 1.79 16 48 H 0.04 0.88 6.62 -51.93 -0.34 0.54 16 49 H 0.08 1.52 8.11 -51.93 -0.42 1.09 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -31.12 385.32 -9.53 -40.65 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.82 Total: 2.27 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.51 Total: 8.89 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -1.19 Total: -55.32 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.16 Total: -16.59 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.12 -9.53 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333064637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.454 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds