Wall clock time and date at job start Wed Apr 1 2020 01:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48506 * 109.47142 * 270.00194 * 3 2 1 5 5 H 1.48500 * 109.46945 * 30.00314 * 3 2 1 6 6 H 1.48494 * 109.47039 * 150.00092 * 3 2 1 7 7 C 1.37879 * 120.00429 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99376 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00471 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47286 * 179.97438 * 9 7 2 11 11 C 1.46947 * 110.96783 * 65.49259 * 10 9 7 12 12 C 1.53240 * 109.31012 * 187.06350 * 11 10 9 13 13 N 1.47087 * 108.68151 * 306.47264 * 12 11 10 14 14 C 1.34774 * 120.87875 * 231.10774 * 13 12 11 15 15 O 1.21355 * 120.00475 * 358.42191 * 14 13 12 16 16 C 1.49452 * 120.00051 * 178.42250 * 14 13 12 17 17 O 1.21352 * 119.99620 * 6.47462 * 16 14 13 18 18 N 1.34777 * 120.00137 * 186.48362 * 16 14 13 19 19 C 1.46502 * 119.99580 * 179.97438 * 18 16 14 20 20 H 1.08996 * 109.47473 * 34.99748 * 19 18 16 21 21 C 1.53000 * 109.46989 * 274.99294 * 19 18 16 22 22 C 1.53002 * 109.46804 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47234 * 60.00397 * 22 21 19 24 24 C 1.53000 * 109.47143 * 299.99846 * 23 22 21 25 25 H 1.08996 * 109.47015 * 299.99882 * 24 23 22 26 26 F 1.39895 * 109.47120 * 179.97438 * 24 23 22 27 27 C 1.53002 * 109.46930 * 59.99968 * 24 23 22 28 28 C 1.47078 * 118.23914 * 51.08672 * 13 12 11 29 29 C 1.46899 * 110.99857 * 190.00107 * 10 9 7 30 30 H 0.97001 * 120.00677 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47240 * 59.99742 * 9 7 2 32 32 H 1.08997 * 109.47201 * 300.00003 * 9 7 2 33 33 H 1.09006 * 109.33887 * 67.21673 * 11 10 9 34 34 H 1.09001 * 109.67456 * 307.11794 * 11 10 9 35 35 H 1.09004 * 109.62893 * 186.66684 * 12 11 10 36 36 H 1.08998 * 109.62806 * 66.28249 * 12 11 10 37 37 H 0.96994 * 120.00026 * 359.97438 * 18 16 14 38 38 H 1.08996 * 109.47383 * 300.00508 * 21 19 18 39 39 H 1.09003 * 109.46686 * 60.00866 * 21 19 18 40 40 H 1.08996 * 109.47342 * 300.00260 * 22 21 19 41 41 H 1.09004 * 109.46572 * 180.02562 * 22 21 19 42 42 H 1.08999 * 109.47585 * 179.97438 * 23 22 21 43 43 H 1.09005 * 109.47248 * 59.99565 * 23 22 21 44 44 H 1.09001 * 109.47050 * 180.02562 * 27 24 23 45 45 H 1.08996 * 109.47342 * 60.00114 * 27 24 23 46 46 H 1.09003 * 109.62713 * 68.51974 * 28 13 12 47 47 H 1.08988 * 109.62737 * 188.91043 * 28 13 12 48 48 H 1.09007 * 109.49064 * 52.78488 * 29 10 9 49 49 H 1.08998 * 109.51443 * 292.72062 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 3.6394 -3.2648 -1.2492 12 6 4.0099 -4.7476 -1.1385 13 7 5.4259 -4.8520 -0.7548 14 6 6.2758 -5.6317 -1.4521 15 8 5.8699 -6.2817 -2.3931 16 6 7.7183 -5.6960 -1.0665 17 8 8.1019 -5.1410 -0.0578 18 7 8.5931 -6.3701 -1.8390 19 6 10.0071 -6.4325 -1.4612 20 1 10.0917 -6.4730 -0.3753 21 6 10.7298 -5.1890 -1.9831 22 6 12.2068 -5.2545 -1.5890 23 6 12.8419 -6.5065 -2.1974 24 6 12.1192 -7.7500 -1.6756 25 1 12.2041 -7.7907 -0.5898 26 9 12.6996 -8.8946 -2.2324 27 6 10.6423 -7.6844 -2.0697 28 6 5.8900 -4.0827 0.4096 29 6 5.4501 -2.6251 0.2366 30 1 -0.4851 0.8400 0.0004 31 1 3.8752 -0.6804 0.8888 32 1 3.8745 -0.6800 -0.8911 33 1 4.1841 -2.8148 -2.0793 34 1 2.5675 -3.1697 -1.4228 35 1 3.8540 -5.2368 -2.1001 36 1 3.3889 -5.2245 -0.3803 37 1 8.2864 -6.8139 -2.6451 38 1 10.6453 -5.1485 -3.0690 39 1 10.2771 -4.2971 -1.5498 40 1 12.2916 -5.2952 -0.5031 41 1 12.7215 -4.3684 -1.9604 42 1 13.8942 -6.5530 -1.9171 43 1 12.7570 -6.4658 -3.2834 44 1 10.1273 -8.5701 -1.6976 45 1 10.5574 -7.6438 -3.1556 46 1 5.4494 -4.4926 1.3185 47 1 6.9767 -4.1351 0.4736 48 1 5.6885 -2.0635 1.1400 49 1 5.9726 -2.1858 -0.6132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336536504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:54 Heat of formation + Delta-G solvation = -102.384990 kcal Electronic energy + Delta-G solvation = -30326.616414 eV Core-core repulsion = 26010.328193 eV Total energy + Delta-G solvation = -4316.288221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.11592 -41.14977 -39.44487 -38.09546 -37.71845 -35.05155 -34.13447 -32.38146 -30.98093 -30.87492 -30.00378 -28.92034 -26.25382 -24.75322 -23.40701 -23.26091 -22.43868 -21.40714 -20.98995 -20.57077 -19.43688 -17.79806 -17.36753 -16.82522 -16.63830 -16.33872 -16.11222 -15.83397 -15.47353 -14.96067 -14.84678 -14.73992 -14.67864 -14.59120 -14.21689 -14.02839 -13.88100 -13.48773 -13.39223 -13.07407 -12.96259 -12.48910 -12.40281 -12.35797 -11.95552 -11.68786 -11.63429 -11.48583 -11.23820 -11.14644 -11.12014 -10.94850 -10.86829 -10.80607 -10.67629 -10.36030 -9.88011 -9.65262 -9.39889 -9.08206 -8.67563 -8.61435 -7.47954 -6.09509 -4.07452 1.26296 2.11292 3.06263 3.25083 3.29364 3.33313 3.34731 3.85556 3.97285 4.02495 4.17503 4.29262 4.38097 4.40327 4.54590 4.66816 4.68924 4.76892 4.91414 4.94853 5.21924 5.23312 5.26165 5.35081 5.38055 5.40151 5.52024 5.53108 5.55546 5.57669 5.66779 5.70918 5.73757 5.82137 5.86625 6.15244 6.26324 6.32483 6.40384 6.51799 6.76116 6.80726 6.90748 7.26818 7.53037 7.57235 7.79884 7.87403 7.94841 8.59452 8.97814 9.51865 11.03333 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.002113 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.787668 B =13250.059492 C =13983.718645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.162 3.838 10 N -0.529 5.529 11 C 0.052 3.948 12 C 0.110 3.890 13 N -0.569 5.569 14 C 0.501 3.499 15 O -0.533 6.533 16 C 0.516 3.484 17 O -0.506 6.506 18 N -0.698 5.698 19 C 0.148 3.852 20 H 0.098 0.902 21 C -0.136 4.136 22 C -0.113 4.113 23 C -0.148 4.148 24 C 0.098 3.902 25 H 0.088 0.912 26 F -0.212 7.212 27 C -0.156 4.156 28 C 0.059 3.941 29 C 0.040 3.960 30 H 0.264 0.736 31 H 0.031 0.969 32 H -0.016 1.016 33 H 0.025 0.975 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.150 0.850 48 H 0.082 0.918 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.963 -14.303 -3.932 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.077 4.077 12 C -0.012 4.012 13 N -0.301 5.301 14 C 0.283 3.717 15 O -0.412 6.412 16 C 0.298 3.702 17 O -0.383 6.383 18 N -0.350 5.350 19 C 0.043 3.957 20 H 0.116 0.884 21 C -0.175 4.175 22 C -0.152 4.152 23 C -0.186 4.186 24 C 0.061 3.939 25 H 0.106 0.894 26 F -0.192 7.192 27 C -0.194 4.194 28 C -0.062 4.062 29 C -0.089 4.089 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.001 0.999 33 H 0.043 0.957 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.250 0.750 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.166 0.834 48 H 0.101 0.899 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 25.621 -14.394 -3.325 29.575 hybrid contribution 0.453 1.242 -1.052 1.689 sum 26.074 -13.153 -4.377 29.530 Atomic orbital electron populations 1.69883 1.06108 1.26912 1.50812 1.24901 0.94747 0.98879 0.94781 0.86857 0.80347 0.84039 0.78448 1.20391 1.21109 1.19199 1.21014 0.88616 0.94754 1.50612 0.90049 1.20183 0.97173 0.83821 0.95178 1.61906 1.10325 1.19129 1.33992 1.22380 1.03126 0.91425 0.90764 1.22055 0.79031 0.98138 1.01937 1.48182 1.09906 1.42659 1.29336 1.19857 0.86581 0.81609 0.83636 1.90744 1.78039 1.43790 1.28580 1.20377 0.87328 0.78951 0.83535 1.90368 1.78964 1.43545 1.25390 1.45824 1.07841 1.53298 1.28046 1.20965 0.79096 0.94451 1.01170 0.88415 1.22026 0.95328 0.98266 1.01862 1.21418 0.94832 0.97485 1.01427 1.22191 1.00420 0.93859 1.02121 1.21446 0.91649 0.82274 0.98538 0.89435 1.92831 1.85864 1.52812 1.87735 1.22409 0.95266 0.98695 1.03034 1.23373 1.05460 0.90547 0.86832 1.22455 0.90063 0.95630 1.00779 0.92604 0.95148 0.99868 0.95693 0.87621 0.89021 0.90040 0.74976 0.91133 0.90446 0.91033 0.90518 0.90384 0.90497 0.89670 0.89757 0.90676 0.83408 0.89924 0.95716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.51 -14.18 8.96 -34.44 -0.31 -14.49 16 8 H 0.08 2.44 7.36 -52.48 -0.39 2.05 16 9 C 0.16 3.86 3.79 -4.98 -0.02 3.84 16 10 N -0.53 -10.76 4.62 -235.72 -1.09 -11.84 16 11 C 0.05 0.97 5.46 -3.67 -0.02 0.95 16 12 C 0.11 1.75 6.59 -3.60 -0.02 1.73 16 13 N -0.57 -8.57 3.01 -172.97 -0.52 -9.09 16 14 C 0.50 7.09 7.77 -11.58 -0.09 7.00 16 15 O -0.53 -8.33 15.95 5.49 0.09 -8.24 16 16 C 0.52 6.03 7.77 -11.58 -0.09 5.94 16 17 O -0.51 -6.47 12.70 5.50 0.07 -6.40 16 18 N -0.70 -5.95 5.07 -54.23 -0.27 -6.23 16 19 C 0.15 0.97 2.46 -67.93 -0.17 0.81 16 20 H 0.10 0.71 7.58 -51.93 -0.39 0.32 16 21 C -0.14 -0.84 5.49 -26.73 -0.15 -0.99 16 22 C -0.11 -0.53 5.92 -26.73 -0.16 -0.68 16 23 C -0.15 -0.67 5.66 -26.73 -0.15 -0.82 16 24 C 0.10 0.53 3.88 -26.73 -0.10 0.42 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 26 F -0.21 -1.69 17.08 2.25 0.04 -1.65 16 27 C -0.16 -0.83 5.12 -26.73 -0.14 -0.96 16 28 C 0.06 0.86 6.36 -3.60 -0.02 0.84 16 29 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.03 0.73 7.03 -51.93 -0.36 0.37 16 32 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 2.17 6.67 -51.93 -0.35 1.82 16 35 H 0.09 1.40 7.07 -51.93 -0.37 1.03 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.41 3.17 8.09 -40.82 -0.33 2.84 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.15 2.05 3.91 -56.57 -0.22 1.83 16 48 H 0.08 1.32 7.99 -51.93 -0.41 0.91 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -31.81 384.34 -9.23 -41.03 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.88 Total: 0.31 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.56 Total: 6.09 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -1.11 Total: -53.49 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.16 Total: -14.63 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.81 -9.23 -41.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336536504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.352 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds