Wall clock time and date at job start Wed Apr 1 2020 01:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48506 * 109.47142 * 270.00194 * 3 2 1 5 5 H 1.48500 * 109.46945 * 30.00314 * 3 2 1 6 6 H 1.48494 * 109.47039 * 150.00092 * 3 2 1 7 7 C 1.37879 * 120.00429 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99376 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00471 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47286 * 179.97438 * 9 7 2 11 11 C 1.46947 * 110.96783 * 65.49259 * 10 9 7 12 12 C 1.53240 * 109.31012 * 187.06350 * 11 10 9 13 13 N 1.47087 * 108.68151 * 306.47264 * 12 11 10 14 14 C 1.34774 * 120.87875 * 231.10774 * 13 12 11 15 15 O 1.21355 * 120.00475 * 358.42191 * 14 13 12 16 16 C 1.49452 * 120.00051 * 178.42250 * 14 13 12 17 17 O 1.21352 * 119.99620 * 6.47462 * 16 14 13 18 18 N 1.34777 * 120.00137 * 186.48362 * 16 14 13 19 19 C 1.46502 * 119.99580 * 179.97438 * 18 16 14 20 20 H 1.08996 * 109.47473 * 34.99748 * 19 18 16 21 21 C 1.53000 * 109.46989 * 274.99294 * 19 18 16 22 22 C 1.53002 * 109.46804 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47234 * 60.00397 * 22 21 19 24 24 C 1.53000 * 109.47143 * 299.99846 * 23 22 21 25 25 H 1.08996 * 109.47015 * 299.99882 * 24 23 22 26 26 F 1.39895 * 109.47120 * 179.97438 * 24 23 22 27 27 C 1.53002 * 109.46930 * 59.99968 * 24 23 22 28 28 C 1.47078 * 118.23914 * 51.08672 * 13 12 11 29 29 C 1.46899 * 110.99857 * 190.00107 * 10 9 7 30 30 H 0.97001 * 120.00677 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47240 * 59.99742 * 9 7 2 32 32 H 1.08997 * 109.47201 * 300.00003 * 9 7 2 33 33 H 1.09006 * 109.33887 * 67.21673 * 11 10 9 34 34 H 1.09001 * 109.67456 * 307.11794 * 11 10 9 35 35 H 1.09004 * 109.62893 * 186.66684 * 12 11 10 36 36 H 1.08998 * 109.62806 * 66.28249 * 12 11 10 37 37 H 0.96994 * 120.00026 * 359.97438 * 18 16 14 38 38 H 1.08996 * 109.47383 * 300.00508 * 21 19 18 39 39 H 1.09003 * 109.46686 * 60.00866 * 21 19 18 40 40 H 1.08996 * 109.47342 * 300.00260 * 22 21 19 41 41 H 1.09004 * 109.46572 * 180.02562 * 22 21 19 42 42 H 1.08999 * 109.47585 * 179.97438 * 23 22 21 43 43 H 1.09005 * 109.47248 * 59.99565 * 23 22 21 44 44 H 1.09001 * 109.47050 * 180.02562 * 27 24 23 45 45 H 1.08996 * 109.47342 * 60.00114 * 27 24 23 46 46 H 1.09003 * 109.62713 * 68.51974 * 28 13 12 47 47 H 1.08988 * 109.62737 * 188.91043 * 28 13 12 48 48 H 1.09007 * 109.49064 * 52.78488 * 29 10 9 49 49 H 1.08998 * 109.51443 * 292.72062 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 3.6394 -3.2648 -1.2492 12 6 4.0099 -4.7476 -1.1385 13 7 5.4259 -4.8520 -0.7548 14 6 6.2758 -5.6317 -1.4521 15 8 5.8699 -6.2817 -2.3931 16 6 7.7183 -5.6960 -1.0665 17 8 8.1019 -5.1410 -0.0578 18 7 8.5931 -6.3701 -1.8390 19 6 10.0071 -6.4325 -1.4612 20 1 10.0917 -6.4730 -0.3753 21 6 10.7298 -5.1890 -1.9831 22 6 12.2068 -5.2545 -1.5890 23 6 12.8419 -6.5065 -2.1974 24 6 12.1192 -7.7500 -1.6756 25 1 12.2041 -7.7907 -0.5898 26 9 12.6996 -8.8946 -2.2324 27 6 10.6423 -7.6844 -2.0697 28 6 5.8900 -4.0827 0.4096 29 6 5.4501 -2.6251 0.2366 30 1 -0.4851 0.8400 0.0004 31 1 3.8752 -0.6804 0.8888 32 1 3.8745 -0.6800 -0.8911 33 1 4.1841 -2.8148 -2.0793 34 1 2.5675 -3.1697 -1.4228 35 1 3.8540 -5.2368 -2.1001 36 1 3.3889 -5.2245 -0.3803 37 1 8.2864 -6.8139 -2.6451 38 1 10.6453 -5.1485 -3.0690 39 1 10.2771 -4.2971 -1.5498 40 1 12.2916 -5.2952 -0.5031 41 1 12.7215 -4.3684 -1.9604 42 1 13.8942 -6.5530 -1.9171 43 1 12.7570 -6.4658 -3.2834 44 1 10.1273 -8.5701 -1.6976 45 1 10.5574 -7.6438 -3.1556 46 1 5.4494 -4.4926 1.3185 47 1 6.9767 -4.1351 0.4736 48 1 5.6885 -2.0635 1.1400 49 1 5.9726 -2.1858 -0.6132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336536504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:53 Heat of formation + Delta-G solvation = -124.830908 kcal Electronic energy + Delta-G solvation = -30327.589742 eV Core-core repulsion = 26010.328193 eV Total energy + Delta-G solvation = -4317.261549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.63431 -42.15854 -40.39593 -39.09652 -38.80925 -36.26810 -35.15685 -34.38380 -32.21823 -31.43560 -30.76264 -30.44407 -27.75699 -25.95978 -24.61220 -23.70350 -23.54083 -22.85822 -21.86058 -21.35523 -20.57685 -19.11552 -18.62693 -18.27880 -17.54678 -17.15080 -16.86273 -16.69919 -16.46066 -16.14307 -15.96630 -15.88704 -15.74167 -15.46178 -15.35845 -15.32834 -14.95364 -14.73915 -14.42459 -14.31340 -13.88914 -13.72833 -13.47590 -13.29161 -12.91431 -12.89194 -12.83409 -12.52173 -12.41439 -12.27341 -12.17844 -12.10730 -11.92337 -11.77962 -11.68077 -11.54992 -11.44755 -11.34368 -10.79917 -10.37592 -10.20983 -9.94529 -9.09882 -8.28343 -6.31854 0.23991 1.15058 1.34562 1.36301 1.46895 2.02315 2.30663 2.34126 3.03305 3.13389 3.16005 3.40140 3.55131 3.67797 3.83920 3.91764 3.99026 4.00180 4.11983 4.17846 4.25283 4.28051 4.29522 4.36636 4.44858 4.52362 4.53954 4.69964 4.77352 4.81745 4.88073 4.91988 4.94875 4.96541 5.02958 5.08434 5.11644 5.17583 5.20078 5.22136 5.36650 5.44360 5.51730 5.85108 5.96855 6.17584 6.27203 6.59166 6.60648 6.74214 6.83808 7.31659 8.87796 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.002113 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.787668 B =13250.059492 C =13983.718645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.516 4.516 8 H 0.042 0.958 9 C 0.172 3.828 10 N -0.542 5.542 11 C 0.057 3.943 12 C 0.121 3.879 13 N -0.576 5.576 14 C 0.501 3.499 15 O -0.549 6.549 16 C 0.521 3.479 17 O -0.517 6.517 18 N -0.682 5.682 19 C 0.149 3.851 20 H 0.095 0.905 21 C -0.134 4.134 22 C -0.108 4.108 23 C -0.144 4.144 24 C 0.094 3.906 25 H 0.100 0.900 26 F -0.226 7.226 27 C -0.149 4.149 28 C 0.069 3.931 29 C 0.040 3.960 30 H 0.267 0.733 31 H 0.035 0.965 32 H -0.016 1.016 33 H 0.023 0.977 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.419 0.581 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.165 0.835 48 H 0.094 0.906 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.114 -14.249 -3.921 32.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.554 4.554 8 H 0.060 0.940 9 C 0.045 3.955 10 N -0.267 5.267 11 C -0.072 4.072 12 C -0.001 4.001 13 N -0.308 5.308 14 C 0.284 3.716 15 O -0.428 6.428 16 C 0.302 3.698 17 O -0.395 6.395 18 N -0.333 5.333 19 C 0.045 3.955 20 H 0.114 0.886 21 C -0.172 4.172 22 C -0.146 4.146 23 C -0.182 4.182 24 C 0.057 3.943 25 H 0.118 0.882 26 F -0.207 7.207 27 C -0.188 4.188 28 C -0.051 4.051 29 C -0.089 4.089 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.002 0.998 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.180 0.820 48 H 0.112 0.888 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 28.819 -14.380 -3.330 32.379 hybrid contribution -0.535 1.096 -1.098 1.641 sum 28.285 -13.284 -4.428 31.561 Atomic orbital electron populations 1.70038 1.08064 1.28096 1.52455 1.25829 0.95597 1.03084 0.94428 0.85737 0.79572 0.78801 0.78945 1.19611 1.20727 1.17117 1.21240 0.90901 0.93371 1.49912 0.93975 1.19948 0.94414 0.86014 0.95130 1.61817 1.12940 1.17166 1.34776 1.22263 1.01408 0.93310 0.90200 1.21821 0.80064 0.95856 1.02403 1.48213 1.09565 1.43282 1.29759 1.20298 0.87580 0.80752 0.82966 1.90734 1.78628 1.44243 1.29164 1.19870 0.86406 0.79673 0.83831 1.90337 1.78647 1.44532 1.25975 1.45820 1.08305 1.51776 1.27446 1.21096 0.77764 0.95426 1.01192 0.88648 1.21995 0.96208 0.97100 1.01931 1.21382 0.93629 0.97840 1.01745 1.22157 1.00709 0.93228 1.02069 1.21598 0.91447 0.81980 0.99249 0.88247 1.92804 1.86101 1.53782 1.88039 1.22342 0.95237 0.97903 1.03273 1.23382 1.06204 0.88908 0.86636 1.22569 0.87496 0.97500 1.01311 0.92439 0.94704 0.99842 0.95907 0.90420 0.88380 0.90006 0.74306 0.90793 0.92039 0.90593 0.89808 0.89668 0.90520 0.89578 0.89231 0.90549 0.81956 0.88795 0.95506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 2 C 0.01 0.47 5.47 84.66 0.46 0.93 16 3 Si 0.95 43.55 27.47 68.60 1.88 45.43 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 7 C -0.52 -29.32 8.96 25.60 0.23 -29.10 16 8 H 0.04 2.66 7.36 -2.91 -0.02 2.63 16 9 C 0.17 8.10 3.79 85.55 0.32 8.42 16 10 N -0.54 -21.94 4.62 -899.69 -4.15 -26.09 16 11 C 0.06 2.17 5.46 86.37 0.47 2.64 16 12 C 0.12 3.82 6.59 86.35 0.57 4.39 16 13 N -0.58 -16.69 3.01 -819.50 -2.47 -19.16 16 14 C 0.50 13.44 7.77 87.27 0.68 14.12 16 15 O -0.55 -16.44 15.95 -3.26 -0.05 -16.49 16 16 C 0.52 11.20 7.77 87.27 0.68 11.88 16 17 O -0.52 -12.10 12.70 -3.25 -0.04 -12.14 16 18 N -0.68 -10.27 5.07 -443.85 -2.25 -12.52 16 19 C 0.15 1.64 2.46 44.99 0.11 1.75 16 20 H 0.10 1.17 7.58 -2.39 -0.02 1.15 16 21 C -0.13 -1.37 5.49 30.59 0.17 -1.21 16 22 C -0.11 -0.74 5.92 30.59 0.18 -0.56 16 23 C -0.14 -0.97 5.66 30.59 0.17 -0.79 16 24 C 0.09 0.81 3.88 30.60 0.12 0.92 16 25 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 26 F -0.23 -3.23 17.08 44.97 0.77 -2.46 16 27 C -0.15 -1.26 5.12 30.60 0.16 -1.10 16 28 C 0.07 1.91 6.36 86.35 0.55 2.46 16 29 C 0.04 1.28 5.62 86.38 0.49 1.76 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.03 1.62 7.03 -2.39 -0.02 1.60 16 32 H -0.02 -0.76 7.55 -2.39 -0.02 -0.77 16 33 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.08 3.36 6.67 -2.39 -0.02 3.35 16 35 H 0.10 2.97 7.07 -2.39 -0.02 2.96 16 36 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.42 5.58 8.09 -92.71 -0.75 4.83 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.16 4.14 3.91 -75.78 -0.30 3.84 16 48 H 0.09 2.80 7.99 -2.38 -0.02 2.78 16 49 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -68.92 384.34 -0.78 -69.71 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -0.13 Total: 15.50 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.36 Total: 16.52 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -8.57 Total: -116.08 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.09 Total: -28.63 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.77 Total: -2.46 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Total: -68.92 -0.78 -69.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336536504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.121 kcal (2) G-P(sol) polarization free energy of solvation -68.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds