Wall clock time and date at job start Wed Apr 1 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48504 * 109.47217 * 269.99646 * 3 2 1 5 5 H 1.48498 * 109.47356 * 29.99938 * 3 2 1 6 6 H 1.48506 * 109.46885 * 150.00004 * 3 2 1 7 7 C 1.37882 * 119.99519 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99979 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99569 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46826 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47213 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47534 * 54.99585 * 12 11 10 14 14 N 1.46908 * 109.46970 * 294.99676 * 12 11 10 15 15 C 1.50700 * 109.47078 * 174.99833 * 12 11 10 16 16 O 1.21283 * 119.99837 * 99.99687 * 15 12 11 17 17 N 1.34773 * 119.99816 * 279.99491 * 15 12 11 18 18 C 1.46500 * 119.99870 * 179.97438 * 17 15 12 19 19 H 1.08997 * 109.17205 * 35.72651 * 18 17 15 20 20 C 1.52625 * 109.13918 * 276.46616 * 18 17 15 21 21 C 1.53420 * 107.82308 * 298.28961 * 20 18 17 22 22 C 1.52502 * 107.95543 * 299.04443 * 21 20 18 23 23 N 1.47418 * 111.28242 * 60.72940 * 22 21 20 24 24 C 1.47431 * 106.69931 * 178.66254 * 23 22 21 25 25 C 1.52766 * 111.24378 * 195.34454 * 24 23 22 26 26 S 1.82048 * 107.66629 * 296.49333 * 25 24 23 27 27 C 1.81537 * 101.26758 * 52.76842 * 26 25 24 28 28 C 1.46281 * 112.68634 * 302.74141 * 23 22 21 29 29 H 1.08992 * 109.52952 * 291.61968 * 28 23 22 30 30 H 0.97006 * 119.99586 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47511 * 59.99634 * 9 7 2 32 32 H 1.09000 * 109.47038 * 299.99177 * 9 7 2 33 33 H 1.09000 * 109.47382 * 59.99546 * 10 9 7 34 34 H 1.09010 * 109.47163 * 299.99573 * 10 9 7 35 35 H 1.09000 * 109.47290 * 59.99523 * 11 10 9 36 36 H 1.09007 * 109.46515 * 299.99380 * 11 10 9 37 37 H 1.00904 * 110.99697 * 300.00167 * 14 12 11 38 38 H 1.00896 * 110.99515 * 63.95177 * 14 12 11 39 39 H 0.97003 * 120.00175 * 0.02562 * 17 15 12 40 40 H 1.09001 * 109.78685 * 57.86725 * 20 18 17 41 41 H 1.08997 * 109.79202 * 178.70397 * 20 18 17 42 42 H 1.08995 * 109.76954 * 58.66360 * 21 20 18 43 43 H 1.09000 * 109.76573 * 179.38278 * 21 20 18 44 44 H 1.08997 * 109.12156 * 300.26001 * 22 21 20 45 45 H 1.09006 * 109.11399 * 181.18711 * 22 21 20 46 46 H 1.08997 * 109.13097 * 74.89037 * 24 23 22 47 47 H 1.08997 * 109.12505 * 315.79775 * 24 23 22 48 48 H 1.08997 * 109.81756 * 56.03856 * 25 24 23 49 49 H 1.08997 * 109.81624 * 176.95252 * 25 24 23 50 50 H 1.08998 * 109.45305 * 188.02310 * 27 26 25 51 51 H 1.09001 * 109.42222 * 68.09726 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0009 12 6 6.0613 -4.0793 0.0015 13 1 5.6266 -4.6187 -0.8401 14 7 5.6727 -4.7356 1.2571 15 6 7.5632 -4.0813 -0.1225 16 8 8.2528 -4.2339 0.8635 17 7 8.1400 -3.9135 -1.3289 18 6 9.6000 -3.9148 -1.4493 19 1 10.0170 -4.6305 -0.7409 20 6 10.1302 -2.5209 -1.1244 21 6 9.5446 -1.5443 -2.1526 22 6 10.0176 -1.9784 -3.5358 23 7 9.5530 -3.3400 -3.8573 24 6 10.0353 -3.6422 -5.2173 25 6 9.3123 -4.8529 -5.8049 26 16 9.7232 -6.2958 -4.7737 27 6 9.2946 -5.6832 -3.1195 28 6 9.9877 -4.3315 -2.8735 29 1 11.0682 -4.4591 -2.9377 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8911 32 1 3.8751 -0.6807 -0.8889 33 1 3.6583 -3.1504 -0.8892 34 1 3.6577 -3.1507 0.8908 35 1 5.9148 -2.1230 0.8909 36 1 5.9146 -2.1230 -0.8892 37 1 6.0637 -4.2539 2.0528 38 1 4.6690 -4.8045 1.3334 39 1 7.5884 -3.7911 -2.1174 40 1 9.8175 -2.2318 -0.1210 41 1 11.2183 -2.5157 -1.1884 42 1 8.4559 -1.5728 -2.1096 43 1 9.8953 -0.5339 -1.9426 44 1 11.1070 -1.9571 -3.5636 45 1 9.6289 -1.2836 -4.2803 46 1 11.1049 -3.8489 -5.1794 47 1 9.8624 -2.7774 -5.8579 48 1 8.2357 -4.6830 -5.7908 49 1 9.6471 -5.0225 -6.8282 50 1 9.6246 -6.4020 -2.3695 51 1 8.2144 -5.5554 -3.0490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344778063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:19 Heat of formation + Delta-G solvation = -48.001037 kcal Electronic energy + Delta-G solvation = -28886.918247 eV Core-core repulsion = 25139.201467 eV Total energy + Delta-G solvation = -3747.716780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81311 -39.14607 -36.24335 -35.40847 -33.82599 -33.35665 -31.99306 -31.47903 -30.32019 -28.27434 -27.54695 -25.56038 -24.13264 -23.30955 -22.35355 -21.77140 -20.43916 -20.20231 -19.49491 -17.66337 -17.05057 -16.74626 -16.30743 -16.23997 -15.55547 -15.29578 -15.02677 -14.85549 -14.67886 -14.55279 -14.27367 -14.06023 -13.86834 -13.74129 -13.61471 -13.25036 -12.88698 -12.65590 -12.59892 -12.44568 -12.33989 -12.10547 -11.99302 -11.69700 -11.49552 -11.29441 -11.26166 -11.03746 -10.79843 -10.72784 -10.07262 -10.03772 -9.98488 -9.80164 -9.53277 -9.24841 -9.23334 -8.93056 -8.58962 -8.53364 -8.06310 -6.08784 -4.07165 1.38525 2.08534 2.67881 2.96749 3.22632 3.26138 3.34217 3.37313 4.05992 4.26287 4.28548 4.40724 4.59837 4.64158 4.67368 4.72323 4.73910 4.78841 4.85121 4.90125 5.00441 5.11236 5.14168 5.15807 5.23180 5.25558 5.28890 5.31156 5.37799 5.47468 5.52797 5.60463 5.65405 5.82549 5.86765 5.94048 6.11861 6.32791 6.35400 6.41332 6.53277 6.54976 6.79511 7.12295 7.20990 7.34476 7.49163 7.56347 7.74311 8.24491 8.48679 8.95968 9.53718 11.04674 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.002721 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.132793 B =10286.730307 C =10763.892532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.101 4.101 11 C -0.148 4.148 12 C 0.076 3.924 13 H 0.099 0.901 14 N -0.830 5.830 15 C 0.525 3.475 16 O -0.536 6.536 17 N -0.721 5.721 18 C 0.158 3.842 19 H 0.093 0.907 20 C -0.134 4.134 21 C -0.120 4.120 22 C 0.055 3.945 23 N -0.532 5.532 24 C 0.048 3.952 25 C -0.077 4.077 26 S -0.272 6.272 27 C -0.073 4.073 28 C 0.083 3.917 29 H 0.068 0.932 30 H 0.263 0.737 31 H 0.014 0.986 32 H 0.010 0.990 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.348 0.652 38 H 0.352 0.648 39 H 0.406 0.594 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.109 0.891 50 H 0.109 0.891 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.800 -7.765 -10.557 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.139 4.139 11 C -0.188 4.188 12 C -0.039 4.039 13 H 0.117 0.883 14 N -0.362 5.362 15 C 0.311 3.689 16 O -0.411 6.411 17 N -0.375 5.375 18 C 0.050 3.950 19 H 0.111 0.889 20 C -0.173 4.173 21 C -0.158 4.158 22 C -0.072 4.072 23 N -0.258 5.258 24 C -0.081 4.081 25 C -0.226 4.226 26 S -0.044 6.044 27 C -0.222 4.222 28 C -0.028 4.028 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.242 0.758 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.107 0.893 48 H 0.114 0.886 49 H 0.127 0.873 50 H 0.127 0.873 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 25.419 -9.481 -10.426 29.064 hybrid contribution -0.056 3.084 0.077 3.085 sum 25.362 -6.397 -10.349 28.130 Atomic orbital electron populations 1.69917 1.06304 1.26905 1.51054 1.25043 0.94730 0.99188 0.94555 0.86777 0.80339 0.83674 0.78468 1.20306 1.21368 1.19107 1.21145 0.89500 0.94459 1.50899 0.91030 1.19548 0.97147 0.92106 0.96152 1.21478 0.90906 1.00300 1.01186 1.22429 0.99069 0.94701 1.02618 1.21410 0.91056 0.95667 0.95783 0.88313 1.58678 1.16860 1.57461 1.03203 1.20718 0.90586 0.74836 0.82728 1.90656 1.64923 1.48503 1.37040 1.46042 1.06688 1.74615 1.10107 1.20944 0.81600 0.97851 0.94565 0.88888 1.21998 1.00160 0.94776 1.00390 1.21594 1.02310 0.98761 0.93156 1.22144 0.97851 0.88934 0.98308 1.62212 1.59880 1.02278 1.01393 1.22384 0.97551 0.98069 0.90105 1.23469 1.04602 0.93897 1.00605 1.87089 1.86808 1.25445 1.05052 1.23701 1.04711 0.98148 0.95614 1.22108 0.98167 0.90996 0.91540 0.91459 0.92715 0.96805 0.97136 0.92452 0.92754 0.91857 0.91620 0.83791 0.83261 0.75786 0.90438 0.91243 0.90385 0.90943 0.94578 0.90159 0.93213 0.89319 0.88611 0.87302 0.87272 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.59 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 10 C -0.10 -1.81 4.92 -26.73 -0.13 -1.94 16 11 C -0.15 -2.15 4.84 -26.73 -0.13 -2.28 16 12 C 0.08 0.97 3.21 -68.86 -0.22 0.75 16 13 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 14 N -0.83 -11.10 8.94 -5.65 -0.05 -11.15 16 15 C 0.52 6.73 7.02 -10.99 -0.08 6.66 16 16 O -0.54 -8.59 15.92 5.56 0.09 -8.50 16 17 N -0.72 -7.00 3.27 -53.81 -0.18 -7.18 16 18 C 0.16 1.38 2.12 -67.93 -0.14 1.23 16 19 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 20 C -0.13 -1.15 5.69 -26.71 -0.15 -1.30 16 21 C -0.12 -0.94 6.00 -26.77 -0.16 -1.10 16 22 C 0.05 0.36 5.08 -3.80 -0.02 0.34 16 23 N -0.53 -3.66 4.50 -225.93 -1.02 -4.68 16 24 C 0.05 0.29 5.08 -3.65 -0.02 0.27 16 25 C -0.08 -0.49 6.73 37.04 0.25 -0.25 16 26 S -0.27 -2.33 22.41 -107.50 -2.41 -4.74 16 27 C -0.07 -0.58 5.46 37.62 0.21 -0.38 16 28 C 0.08 0.61 1.99 -67.40 -0.13 0.48 16 29 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 31 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 32 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.97 6.87 -51.92 -0.36 0.61 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.35 4.82 8.58 -39.29 -0.34 4.48 16 38 H 0.35 4.50 7.55 -39.29 -0.30 4.20 16 39 H 0.41 3.65 7.73 -40.82 -0.32 3.33 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.73 7.49 -51.93 -0.39 0.34 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.04 0.22 8.13 -51.93 -0.42 -0.20 16 45 H 0.08 0.49 7.84 -51.93 -0.41 0.08 16 46 H 0.05 0.31 8.02 -51.93 -0.42 -0.11 16 47 H 0.09 0.43 7.67 -51.93 -0.40 0.03 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.10 0.82 6.84 -51.92 -0.36 0.47 16 LS Contribution 399.35 15.07 6.02 6.02 Total: -1.00 -31.82 399.35 -11.80 -43.63 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -9.09 Total: 7.68 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.28 Total: -11.03 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.47 Total: -49.88 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.41 Total: -4.74 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.82 -11.80 -43.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344778063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.376 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds