Wall clock time and date at job start Wed Apr 1 2020 01:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48504 * 109.47217 * 269.99646 * 3 2 1 5 5 H 1.48498 * 109.47356 * 29.99938 * 3 2 1 6 6 H 1.48506 * 109.46885 * 150.00004 * 3 2 1 7 7 C 1.37882 * 119.99519 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99979 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99569 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46826 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47213 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47534 * 54.99585 * 12 11 10 14 14 N 1.46908 * 109.46970 * 294.99676 * 12 11 10 15 15 C 1.50700 * 109.47078 * 174.99833 * 12 11 10 16 16 O 1.21283 * 119.99837 * 99.99687 * 15 12 11 17 17 N 1.34773 * 119.99816 * 279.99491 * 15 12 11 18 18 C 1.46500 * 119.99870 * 179.97438 * 17 15 12 19 19 H 1.08997 * 109.17205 * 35.72651 * 18 17 15 20 20 C 1.52625 * 109.13918 * 276.46616 * 18 17 15 21 21 C 1.53420 * 107.82308 * 298.28961 * 20 18 17 22 22 C 1.52502 * 107.95543 * 299.04443 * 21 20 18 23 23 N 1.47418 * 111.28242 * 60.72940 * 22 21 20 24 24 C 1.47431 * 106.69931 * 178.66254 * 23 22 21 25 25 C 1.52766 * 111.24378 * 195.34454 * 24 23 22 26 26 S 1.82048 * 107.66629 * 296.49333 * 25 24 23 27 27 C 1.81537 * 101.26758 * 52.76842 * 26 25 24 28 28 C 1.46281 * 112.68634 * 302.74141 * 23 22 21 29 29 H 1.08992 * 109.52952 * 291.61968 * 28 23 22 30 30 H 0.97006 * 119.99586 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47511 * 59.99634 * 9 7 2 32 32 H 1.09000 * 109.47038 * 299.99177 * 9 7 2 33 33 H 1.09000 * 109.47382 * 59.99546 * 10 9 7 34 34 H 1.09010 * 109.47163 * 299.99573 * 10 9 7 35 35 H 1.09000 * 109.47290 * 59.99523 * 11 10 9 36 36 H 1.09007 * 109.46515 * 299.99380 * 11 10 9 37 37 H 1.00904 * 110.99697 * 300.00167 * 14 12 11 38 38 H 1.00896 * 110.99515 * 63.95177 * 14 12 11 39 39 H 0.97003 * 120.00175 * 0.02562 * 17 15 12 40 40 H 1.09001 * 109.78685 * 57.86725 * 20 18 17 41 41 H 1.08997 * 109.79202 * 178.70397 * 20 18 17 42 42 H 1.08995 * 109.76954 * 58.66360 * 21 20 18 43 43 H 1.09000 * 109.76573 * 179.38278 * 21 20 18 44 44 H 1.08997 * 109.12156 * 300.26001 * 22 21 20 45 45 H 1.09006 * 109.11399 * 181.18711 * 22 21 20 46 46 H 1.08997 * 109.13097 * 74.89037 * 24 23 22 47 47 H 1.08997 * 109.12505 * 315.79775 * 24 23 22 48 48 H 1.08997 * 109.81756 * 56.03856 * 25 24 23 49 49 H 1.08997 * 109.81624 * 176.95252 * 25 24 23 50 50 H 1.08998 * 109.45305 * 188.02310 * 27 26 25 51 51 H 1.09001 * 109.42222 * 68.09726 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0009 12 6 6.0613 -4.0793 0.0015 13 1 5.6266 -4.6187 -0.8401 14 7 5.6727 -4.7356 1.2571 15 6 7.5632 -4.0813 -0.1225 16 8 8.2528 -4.2339 0.8635 17 7 8.1400 -3.9135 -1.3289 18 6 9.6000 -3.9148 -1.4493 19 1 10.0170 -4.6305 -0.7409 20 6 10.1302 -2.5209 -1.1244 21 6 9.5446 -1.5443 -2.1526 22 6 10.0176 -1.9784 -3.5358 23 7 9.5530 -3.3400 -3.8573 24 6 10.0353 -3.6422 -5.2173 25 6 9.3123 -4.8529 -5.8049 26 16 9.7232 -6.2958 -4.7737 27 6 9.2946 -5.6832 -3.1195 28 6 9.9877 -4.3315 -2.8735 29 1 11.0682 -4.4591 -2.9377 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8911 32 1 3.8751 -0.6807 -0.8889 33 1 3.6583 -3.1504 -0.8892 34 1 3.6577 -3.1507 0.8908 35 1 5.9148 -2.1230 0.8909 36 1 5.9146 -2.1230 -0.8892 37 1 6.0637 -4.2539 2.0528 38 1 4.6690 -4.8045 1.3334 39 1 7.5884 -3.7911 -2.1174 40 1 9.8175 -2.2318 -0.1210 41 1 11.2183 -2.5157 -1.1884 42 1 8.4559 -1.5728 -2.1096 43 1 9.8953 -0.5339 -1.9426 44 1 11.1070 -1.9571 -3.5636 45 1 9.6289 -1.2836 -4.2803 46 1 11.1049 -3.8489 -5.1794 47 1 9.8624 -2.7774 -5.8579 48 1 8.2357 -4.6830 -5.7908 49 1 9.6471 -5.0225 -6.8282 50 1 9.6246 -6.4020 -2.3695 51 1 8.2144 -5.5554 -3.0490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344778063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:18 Heat of formation + Delta-G solvation = -70.351843 kcal Electronic energy + Delta-G solvation = -28887.887450 eV Core-core repulsion = 25139.201467 eV Total energy + Delta-G solvation = -3748.685983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61115 -40.00291 -37.45073 -36.21956 -35.20510 -34.47799 -33.25360 -32.71073 -30.91660 -29.70244 -28.32362 -26.88598 -24.82460 -24.14608 -23.58672 -22.34789 -21.86882 -21.33026 -20.24394 -18.88873 -18.62827 -17.74000 -17.02438 -16.91341 -16.47110 -16.28093 -16.10593 -15.98315 -15.88662 -15.37443 -15.27676 -14.96427 -14.78874 -14.74508 -14.52783 -14.24171 -14.20718 -13.85928 -13.65394 -13.44410 -13.21711 -13.06718 -13.00587 -12.67662 -12.65839 -12.32415 -12.29370 -11.94702 -11.87597 -11.80478 -11.69472 -11.45428 -11.35237 -11.32915 -10.76573 -10.74522 -10.64595 -10.08420 -9.64989 -9.48402 -8.72825 -8.29576 -6.33463 0.78676 1.34526 1.37127 1.48412 1.50068 1.65117 2.11951 2.35459 2.64512 3.06090 3.42791 3.59448 3.68671 3.76320 3.80489 4.00071 4.01092 4.05342 4.09870 4.11981 4.17706 4.23967 4.32917 4.38610 4.45733 4.50559 4.54935 4.63437 4.71309 4.74660 4.75940 4.79241 4.88920 4.93845 4.96716 5.00677 5.06343 5.11550 5.19001 5.30667 5.50970 5.52286 5.59350 5.67115 5.84089 5.98104 6.08114 6.28483 6.48934 6.58543 6.75387 7.28168 7.31496 8.87237 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.002721 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.132793 B =10286.730307 C =10763.892532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.033 0.967 9 C -0.011 4.011 10 C -0.093 4.093 11 C -0.133 4.133 12 C 0.082 3.918 13 H 0.114 0.886 14 N -0.834 5.834 15 C 0.527 3.473 16 O -0.570 6.570 17 N -0.704 5.704 18 C 0.159 3.841 19 H 0.079 0.921 20 C -0.130 4.130 21 C -0.117 4.117 22 C 0.058 3.942 23 N -0.538 5.538 24 C 0.050 3.950 25 C -0.067 4.067 26 S -0.309 6.309 27 C -0.065 4.065 28 C 0.095 3.905 29 H 0.071 0.929 30 H 0.266 0.734 31 H 0.013 0.987 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.346 0.654 38 H 0.354 0.646 39 H 0.413 0.587 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.091 0.909 46 H 0.051 0.949 47 H 0.107 0.893 48 H 0.093 0.907 49 H 0.124 0.876 50 H 0.104 0.896 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.070 -6.598 -12.125 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.173 1.173 7 C -0.570 4.570 8 H 0.052 0.948 9 C -0.048 4.048 10 C -0.131 4.131 11 C -0.173 4.173 12 C -0.034 4.034 13 H 0.132 0.868 14 N -0.366 5.366 15 C 0.313 3.687 16 O -0.449 6.449 17 N -0.357 5.357 18 C 0.052 3.948 19 H 0.097 0.903 20 C -0.169 4.169 21 C -0.155 4.155 22 C -0.069 4.069 23 N -0.264 5.264 24 C -0.078 4.078 25 C -0.215 4.215 26 S -0.081 6.081 27 C -0.214 4.214 28 C -0.016 4.016 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.159 0.841 38 H 0.170 0.830 39 H 0.250 0.750 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.125 0.875 48 H 0.111 0.889 49 H 0.142 0.858 50 H 0.122 0.878 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 27.705 -8.328 -12.032 31.332 hybrid contribution -0.817 2.637 0.535 2.812 sum 26.888 -5.691 -11.497 29.791 Atomic orbital electron populations 1.70076 1.08330 1.28102 1.52810 1.26038 0.95591 1.03568 0.94253 0.85656 0.79366 0.78328 0.79269 1.18872 1.21258 1.17263 1.21541 0.92294 0.93067 1.50084 0.94835 1.19514 0.93685 0.95348 0.96277 1.21322 0.93345 0.97170 1.01216 1.22229 0.96194 0.95982 1.02902 1.21382 0.91262 0.94660 0.96071 0.86839 1.58688 1.17031 1.57496 1.03387 1.20665 0.90369 0.74623 0.83026 1.90648 1.65494 1.50392 1.38318 1.45924 1.07348 1.73079 1.09360 1.20977 0.80650 0.97864 0.95290 0.90334 1.21943 1.01043 0.94594 0.99345 1.21560 1.01303 0.98925 0.93702 1.22134 0.98402 0.88712 0.97627 1.62217 1.60132 1.02299 1.01721 1.22411 0.97423 0.98416 0.89598 1.23534 1.04518 0.92670 1.00774 1.87232 1.86975 1.27726 1.06199 1.23623 1.04284 0.98375 0.95127 1.21945 0.98155 0.90768 0.90707 0.91143 0.92565 0.96894 0.96204 0.92301 0.93056 0.92594 0.90308 0.84094 0.83016 0.74998 0.92861 0.89871 0.91801 0.90246 0.93681 0.89072 0.93110 0.87513 0.88884 0.85796 0.87780 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 2 C 0.00 0.12 5.47 84.66 0.46 0.58 16 3 Si 0.95 43.70 27.47 68.60 1.88 45.58 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.53 -30.07 9.66 25.60 0.25 -29.83 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.09 -3.23 4.92 30.60 0.15 -3.08 16 11 C -0.13 -3.62 4.84 30.60 0.15 -3.47 16 12 C 0.08 1.97 3.21 44.17 0.14 2.12 16 13 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 14 N -0.83 -21.72 8.94 -171.79 -1.54 -23.25 16 15 C 0.53 13.00 7.02 87.66 0.61 13.61 16 16 O -0.57 -18.11 15.92 -3.04 -0.05 -18.16 16 17 N -0.70 -12.77 3.27 -442.55 -1.45 -14.22 16 18 C 0.16 2.60 2.12 44.99 0.10 2.69 16 19 H 0.08 1.56 7.58 -2.39 -0.02 1.54 16 20 C -0.13 -2.05 5.69 30.61 0.17 -1.87 16 21 C -0.12 -1.56 6.00 30.57 0.18 -1.37 16 22 C 0.06 0.58 5.08 86.04 0.44 1.02 16 23 N -0.54 -6.00 4.50 -868.70 -3.91 -9.91 16 24 C 0.05 0.45 5.08 86.12 0.44 0.88 16 25 C -0.07 -0.70 6.73 71.90 0.48 -0.21 16 26 S -0.31 -4.93 22.41 -56.49 -1.27 -6.20 16 27 C -0.07 -0.97 5.46 72.28 0.39 -0.58 16 28 C 0.10 1.24 1.99 45.45 0.09 1.33 16 29 H 0.07 0.92 8.04 -2.39 -0.02 0.90 16 30 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 31 H 0.01 0.57 7.20 -2.39 -0.02 0.56 16 32 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.80 6.87 -2.38 -0.02 1.79 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.35 9.42 8.58 -89.69 -0.77 8.65 16 38 H 0.35 8.84 7.55 -89.70 -0.68 8.16 16 39 H 0.41 6.60 7.73 -92.71 -0.72 5.89 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.05 7.49 -2.39 -0.02 1.03 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.04 0.40 8.13 -2.39 -0.02 0.38 16 45 H 0.09 0.77 7.84 -2.38 -0.02 0.75 16 46 H 0.05 0.47 8.02 -2.39 -0.02 0.45 16 47 H 0.11 0.62 7.67 -2.39 -0.02 0.60 16 48 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.09 1.44 6.84 -2.39 -0.02 1.42 16 Total: -1.00 -69.57 399.35 -3.12 -72.69 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: -1.29 Total: 31.20 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.18 Total: -18.55 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -6.59 Total: -106.56 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -1.27 Total: -6.20 kcal Total: -69.57 -3.12 -72.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344778063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.338 kcal (2) G-P(sol) polarization free energy of solvation -69.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds