Wall clock time and date at job start Wed Apr 1 2020 01:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48495 * 109.47161 * 270.00051 * 3 2 1 5 5 H 1.48504 * 109.47022 * 30.00712 * 3 2 1 6 6 H 1.48503 * 109.46736 * 149.99965 * 3 2 1 7 7 C 1.38806 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00553 * 197.23620 * 7 2 1 9 9 N 1.36941 * 119.99982 * 16.96836 * 7 2 1 10 10 C 1.46919 * 120.63334 * 207.68476 * 9 7 2 11 11 C 1.52764 * 109.00835 * 233.58078 * 10 9 7 12 12 C 1.53045 * 109.38228 * 305.58608 * 11 10 9 13 13 N 1.46490 * 109.45791 * 181.26148 * 12 11 10 14 14 C 1.34771 * 120.00638 * 84.93305 * 13 12 11 15 15 O 1.21352 * 119.99664 * 359.97438 * 14 13 12 16 16 C 1.49449 * 120.00853 * 179.97438 * 14 13 12 17 17 O 1.21352 * 119.99483 * 359.97438 * 16 14 13 18 18 N 1.34771 * 120.00447 * 180.02562 * 16 14 13 19 19 C 1.46504 * 120.00197 * 180.02562 * 18 16 14 20 20 H 1.09002 * 109.47255 * 34.99699 * 19 18 16 21 21 C 1.52997 * 109.47265 * 154.99596 * 19 18 16 22 22 C 1.52998 * 109.47022 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.47430 * 299.99904 * 22 21 19 24 24 C 1.53009 * 109.46639 * 60.00054 * 23 22 21 25 25 H 1.09003 * 109.46523 * 180.02562 * 24 23 22 26 26 F 1.39893 * 109.47264 * 60.00211 * 24 23 22 27 27 C 1.52998 * 109.47028 * 275.00029 * 19 18 16 28 28 C 1.53037 * 109.53676 * 61.23591 * 12 11 10 29 29 C 1.46928 * 120.62743 * 27.95642 * 9 7 2 30 30 H 0.97009 * 120.00166 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58811 * 353.41355 * 10 9 7 32 32 H 1.08997 * 109.59002 * 113.83786 * 10 9 7 33 33 H 1.08998 * 109.56609 * 185.54719 * 11 10 9 34 34 H 1.09001 * 109.38523 * 65.51373 * 11 10 9 35 35 H 1.08996 * 109.45642 * 301.22115 * 12 11 10 36 36 H 0.97010 * 120.00072 * 264.92720 * 13 12 11 37 37 H 0.97002 * 119.99981 * 359.97438 * 18 16 14 38 38 H 1.09000 * 109.47541 * 299.99924 * 21 19 18 39 39 H 1.09002 * 109.46900 * 59.99886 * 21 19 18 40 40 H 1.09002 * 109.47346 * 60.00196 * 22 21 19 41 41 H 1.09004 * 109.47313 * 179.97438 * 22 21 19 42 42 H 1.08997 * 109.47341 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.47095 * 300.00446 * 23 22 21 44 44 H 1.09002 * 109.46833 * 299.99928 * 27 19 18 45 45 H 1.08994 * 109.47242 * 59.99402 * 27 19 18 46 46 H 1.09005 * 109.49888 * 178.68071 * 28 12 11 47 47 H 1.09006 * 109.52539 * 58.60971 * 28 12 11 48 48 H 1.09001 * 109.58752 * 246.16063 * 29 9 7 49 49 H 1.08995 * 109.59058 * 6.58572 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2230 0.2777 9 7 1.3703 -2.3624 -0.3451 10 6 1.8204 -3.6539 0.1914 11 6 2.0691 -4.6154 -0.9693 12 6 0.8118 -4.6990 -1.8380 13 7 1.0382 -5.6435 -2.9346 14 6 0.8370 -6.9620 -2.7408 15 8 0.4687 -7.3668 -1.6577 16 6 1.0675 -7.9256 -3.8597 17 8 1.4353 -7.5207 -4.9429 18 7 0.8657 -9.2440 -3.6660 19 6 1.0922 -10.1886 -4.7627 20 1 1.9304 -9.8465 -5.3697 21 6 1.4092 -11.5707 -4.1881 22 6 1.6450 -12.5573 -5.3335 23 6 0.3875 -12.6418 -6.2009 24 6 0.0705 -11.2596 -6.7755 25 1 -0.8256 -11.3198 -7.3932 26 9 1.1461 -10.8207 -7.5550 27 6 -0.1649 -10.2731 -5.6307 28 6 0.4942 -3.3167 -2.4129 29 6 0.2241 -2.3399 -1.2641 30 1 -0.4851 0.8401 0.0004 31 1 2.7442 -3.5145 0.7529 32 1 1.0517 -4.0659 0.8452 33 1 2.3082 -5.6047 -0.5791 34 1 2.9024 -4.2500 -1.5696 35 1 -0.0265 -5.0413 -1.2313 36 1 1.3330 -5.3200 -3.8004 37 1 0.5713 -9.5675 -2.8002 38 1 2.3048 -11.5105 -3.5698 39 1 0.5709 -11.9128 -3.5811 40 1 2.4831 -12.2154 -5.9408 41 1 1.8713 -13.5419 -4.9242 42 1 0.5554 -13.3450 -7.0166 43 1 -0.4506 -12.9837 -5.5936 44 1 -1.0032 -10.6152 -5.0237 45 1 -0.3908 -9.2885 -6.0399 46 1 -0.3878 -3.3817 -3.0502 47 1 1.3417 -2.9627 -2.9998 48 1 -0.6774 -2.6426 -0.7314 49 1 0.0950 -1.3338 -1.6628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345858518.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:05 Heat of formation + Delta-G solvation = -118.519072 kcal Electronic energy + Delta-G solvation = -30107.004720 eV Core-core repulsion = 25790.016872 eV Total energy + Delta-G solvation = -4316.987847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.00265 -40.79811 -39.20640 -37.89261 -37.32265 -34.89924 -34.13258 -32.15490 -31.03023 -30.24052 -30.04832 -29.47862 -25.84714 -24.43547 -23.30537 -22.68280 -22.25644 -21.52248 -20.57037 -20.10531 -19.46241 -18.34394 -17.36004 -16.78635 -16.58931 -16.16251 -15.83327 -15.65367 -15.43668 -15.16980 -14.91734 -14.76756 -14.06452 -14.03046 -13.69811 -13.63613 -13.54529 -13.21605 -13.02594 -12.85348 -12.71412 -12.56005 -12.42913 -12.03819 -11.76123 -11.58574 -11.51227 -11.27398 -11.14371 -10.97511 -10.86927 -10.75556 -10.72753 -10.51648 -10.32218 -10.07191 -9.86104 -9.70634 -9.49611 -9.43828 -8.87994 -8.48582 -6.72060 -5.81372 -3.23478 1.40658 2.28798 3.21096 3.37429 3.44593 3.45665 3.56611 3.99808 4.05548 4.23532 4.33090 4.45653 4.48235 4.49623 4.61098 4.77416 4.85765 4.91311 5.05715 5.27210 5.30763 5.36439 5.39596 5.45038 5.48763 5.50894 5.52903 5.59532 5.73318 5.79107 5.84280 6.00985 6.02247 6.15341 6.26122 6.45831 6.48248 6.53135 6.69983 6.76361 6.90767 6.95609 7.28618 7.39769 7.59679 7.71965 7.78299 8.05414 8.42320 9.18625 9.81650 10.38001 11.27692 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.033018 B = 0.001896 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.808892 B =14768.132973 C =15048.935405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.140 4.140 12 C 0.148 3.852 13 N -0.689 5.689 14 C 0.502 3.498 15 O -0.525 6.525 16 C 0.508 3.492 17 O -0.517 6.517 18 N -0.701 5.701 19 C 0.143 3.857 20 H 0.098 0.902 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.148 4.148 24 C 0.096 3.904 25 H 0.086 0.914 26 F -0.209 7.209 27 C -0.160 4.160 28 C -0.148 4.148 29 C 0.174 3.826 30 H 0.254 0.746 31 H 0.057 0.943 32 H 0.021 0.979 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.408 0.592 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.022 0.978 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 -26.156 -11.969 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.021 3.979 11 C -0.181 4.181 12 C 0.046 3.954 13 N -0.340 5.340 14 C 0.282 3.718 15 O -0.401 6.401 16 C 0.289 3.711 17 O -0.392 6.392 18 N -0.354 5.354 19 C 0.039 3.961 20 H 0.116 0.884 21 C -0.167 4.167 22 C -0.155 4.155 23 C -0.186 4.186 24 C 0.059 3.941 25 H 0.104 0.896 26 F -0.190 7.190 27 C -0.198 4.198 28 C -0.188 4.188 29 C 0.048 3.952 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.249 0.751 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.040 0.960 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.791 -25.952 -11.949 28.582 hybrid contribution 0.387 0.864 -0.099 0.952 sum -0.404 -25.088 -12.049 27.834 Atomic orbital electron populations 1.70022 1.05245 1.25574 1.53929 1.25051 0.95318 0.98466 1.00862 0.86268 0.79102 0.83571 0.77695 1.21428 1.21771 1.20434 1.19206 0.92694 0.84706 1.41578 0.91551 1.44092 1.35532 1.01577 1.50338 1.20779 0.98015 0.86499 0.92575 1.22336 0.96983 0.99763 0.98979 1.21243 0.98921 0.88255 0.87019 1.46230 1.65514 1.05525 1.16760 1.20008 0.79631 0.84076 0.88082 1.90758 1.45576 1.78149 1.25662 1.20435 0.78265 0.83752 0.88663 1.90774 1.44352 1.78180 1.25901 1.45816 1.67881 1.05732 1.15999 1.21020 0.98418 0.88656 0.87987 0.88387 1.21853 1.02920 0.93367 0.98560 1.21451 0.98080 0.99488 0.96474 1.22188 0.99665 0.96148 1.00608 1.21494 0.87582 0.93944 0.91049 0.89612 1.92826 1.58558 1.91031 1.76619 1.22551 0.99148 1.00960 0.97190 1.22576 1.00892 0.94298 1.01035 1.20767 0.88899 0.98010 0.87555 0.93571 0.92401 0.96110 0.92599 0.92040 0.89559 0.75605 0.75091 0.90535 0.90860 0.90875 0.90710 0.90467 0.89894 0.89641 0.89947 0.92485 0.91863 0.95976 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.18 55.49 0.62 -25.25 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 8 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 9 N -0.59 -14.63 3.00 -172.59 -0.52 -15.14 16 10 C 0.15 3.13 6.49 -3.93 -0.03 3.10 16 11 C -0.14 -2.52 5.64 -26.83 -0.15 -2.67 16 12 C 0.15 2.55 2.42 -67.89 -0.16 2.38 16 13 N -0.69 -10.22 5.07 -54.20 -0.27 -10.49 16 14 C 0.50 7.36 7.85 -11.59 -0.09 7.27 16 15 O -0.52 -8.67 16.14 5.49 0.09 -8.59 16 16 C 0.51 6.56 7.85 -11.59 -0.09 6.47 16 17 O -0.52 -7.74 16.14 5.49 0.09 -7.65 16 18 N -0.70 -6.81 5.07 -54.24 -0.28 -7.09 16 19 C 0.14 1.19 2.33 -67.93 -0.16 1.03 16 20 H 0.10 1.04 7.24 -51.93 -0.38 0.66 16 21 C -0.13 -0.72 5.39 -26.73 -0.14 -0.87 16 22 C -0.12 -0.59 5.80 -26.73 -0.16 -0.74 16 23 C -0.15 -0.67 5.72 -26.73 -0.15 -0.83 16 24 C 0.10 0.62 4.12 -26.75 -0.11 0.51 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 F -0.21 -2.05 16.04 2.25 0.04 -2.01 16 27 C -0.16 -1.18 5.29 -26.76 -0.14 -1.32 16 28 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 29 C 0.17 4.04 5.31 -3.71 -0.02 4.02 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 31 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.61 7.58 -51.93 -0.39 1.21 16 36 H 0.41 5.57 8.07 -40.82 -0.33 5.24 16 37 H 0.41 3.50 8.07 -40.82 -0.33 3.17 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.45 7.80 -51.93 -0.41 0.05 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -31.49 390.74 -9.18 -40.68 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.03 Total: 4.69 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -1.78 Total: 8.48 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.45 Total: -57.98 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.18 Total: -16.24 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.49 -9.18 -40.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345858518.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.844 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds