Wall clock time and date at job start Wed Apr 1 2020 01:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00357 * 2 1 4 4 H 1.48495 * 109.47088 * 84.61336 * 3 2 1 5 5 H 1.48493 * 109.47094 * 204.61657 * 3 2 1 6 6 H 1.48506 * 109.46740 * 324.61370 * 3 2 1 7 7 C 1.38819 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00078 * 22.58756 * 7 2 1 9 9 N 1.36939 * 119.99763 * 202.59164 * 7 2 1 10 10 C 1.46924 * 120.63302 * 24.91771 * 9 7 2 11 11 C 1.53620 * 108.54439 * 126.36917 * 10 9 7 12 12 C 1.53050 * 109.23836 * 54.85650 * 11 10 9 13 13 N 1.46505 * 109.45354 * 178.49060 * 12 11 10 14 14 C 1.34772 * 119.99958 * 275.06080 * 13 12 11 15 15 O 1.21346 * 120.00148 * 0.02562 * 14 13 12 16 16 C 1.49451 * 120.00172 * 180.02562 * 14 13 12 17 17 O 1.21353 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34772 * 120.00540 * 180.02562 * 16 14 13 19 19 C 1.46498 * 120.00498 * 179.97438 * 18 16 14 20 20 H 1.09000 * 109.47154 * 325.00992 * 19 18 16 21 21 C 1.52995 * 109.47542 * 205.00364 * 19 18 16 22 22 C 1.52996 * 109.47088 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47468 * 60.00036 * 22 21 19 24 24 C 1.52995 * 109.46937 * 300.00056 * 23 22 21 25 25 H 1.09004 * 109.47388 * 180.02562 * 24 23 22 26 26 F 1.39901 * 109.47263 * 299.99653 * 24 23 22 27 27 C 1.52998 * 109.47453 * 59.99728 * 24 23 22 28 28 C 1.53032 * 109.53642 * 298.50818 * 12 11 10 29 29 C 1.46926 * 120.62747 * 205.20118 * 9 7 2 30 30 H 0.97004 * 120.00185 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58551 * 246.20736 * 10 9 7 32 32 H 1.08996 * 109.58461 * 6.62586 * 10 9 7 33 33 H 1.08993 * 109.63318 * 294.86530 * 11 10 9 34 34 H 1.08997 * 109.45818 * 174.74065 * 11 10 9 35 35 H 1.08995 * 109.46081 * 58.53772 * 12 11 10 36 36 H 0.96997 * 119.99700 * 95.07058 * 13 12 11 37 37 H 0.96998 * 119.99581 * 0.02562 * 18 16 14 38 38 H 1.09000 * 109.46918 * 299.99879 * 21 19 18 39 39 H 1.09000 * 109.46915 * 59.99792 * 21 19 18 40 40 H 1.09002 * 109.47241 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.46937 * 299.99616 * 22 21 19 42 42 H 1.08997 * 109.46959 * 59.99599 * 23 22 21 43 43 H 1.08999 * 109.47294 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.47607 * 179.97438 * 27 24 23 45 45 H 1.09000 * 109.46768 * 60.00263 * 27 24 23 46 46 H 1.08996 * 109.50263 * 301.41731 * 28 12 11 47 47 H 1.09004 * 109.52206 * 181.33573 * 28 12 11 48 48 H 1.09006 * 109.58759 * 353.37025 * 29 9 7 49 49 H 1.08998 * 109.58654 * 113.65449 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3839 2.1121 1.3938 5 1 3.6000 1.4099 -0.5832 6 1 1.5092 2.6171 -0.8108 7 6 2.0102 -1.2022 -0.0005 8 1 1.5323 -2.1015 -0.3602 9 7 3.3007 -1.2479 0.4550 10 6 3.7910 -0.2510 1.4165 11 6 4.3919 -0.9893 2.6222 12 6 5.4613 -1.9684 2.1322 13 7 6.0628 -2.6492 3.2816 14 6 7.0805 -2.0715 3.9502 15 8 7.4981 -0.9871 3.6005 16 6 7.6945 -2.7662 5.1223 17 8 7.2772 -3.8508 5.4717 18 7 8.7118 -2.1882 5.7912 19 6 9.3134 -2.8690 6.9405 20 1 8.5425 -3.4164 7.4829 21 6 9.9531 -1.8345 7.8686 22 6 10.5818 -2.5456 9.0685 23 6 11.6526 -3.5225 8.5788 24 6 11.0130 -4.5570 7.6507 25 1 11.7757 -5.2533 7.3021 26 9 10.0239 -5.2599 8.3470 27 6 10.3842 -3.8460 6.4507 28 6 4.8210 -3.0034 1.2044 29 6 4.2233 -2.2912 -0.0131 30 1 -0.4850 0.8401 -0.0004 31 1 4.5552 0.3667 0.9447 32 1 2.9631 0.3767 1.7461 33 1 3.6077 -1.5380 3.1437 34 1 4.8440 -0.2669 3.3019 35 1 6.2326 -1.4220 1.5896 36 1 5.7288 -3.5159 3.5612 37 1 9.0452 -1.3211 5.5121 38 1 10.7240 -1.2872 7.3262 39 1 9.1903 -1.1382 8.2171 40 1 11.0372 -1.8085 9.7300 41 1 9.8112 -3.0931 9.6111 42 1 12.4232 -2.9749 8.0362 43 1 12.1003 -4.0294 9.4336 44 1 9.9288 -4.5830 5.7892 45 1 11.1548 -3.2984 5.9082 46 1 4.0327 -3.5331 1.7392 47 1 5.5782 -3.7146 0.8744 48 1 3.6807 -3.0101 -0.6271 49 1 5.0207 -1.8368 -0.6012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345858550.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:09 Heat of formation + Delta-G solvation = -111.209001 kcal Electronic energy + Delta-G solvation = -30249.719589 eV Core-core repulsion = 25933.048730 eV Total energy + Delta-G solvation = -4316.670859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.03035 -40.87607 -39.31094 -37.99154 -37.54017 -35.03594 -34.22286 -32.20096 -31.05927 -30.45084 -30.28570 -30.00132 -25.94344 -24.38202 -23.33241 -22.92946 -22.61782 -21.57124 -20.62091 -20.24501 -19.72788 -18.42328 -17.41025 -16.84499 -16.70508 -16.20666 -15.93004 -15.84477 -15.50902 -15.30788 -15.01775 -14.79255 -14.26408 -14.07297 -13.95510 -13.79602 -13.68027 -13.25825 -13.15395 -12.96603 -12.88503 -12.63950 -12.39233 -12.06695 -12.00003 -11.84234 -11.80462 -11.61660 -11.30766 -11.11495 -10.99547 -10.87847 -10.76080 -10.65517 -10.19388 -10.09221 -9.99540 -9.59616 -9.53363 -9.50619 -8.98185 -8.64126 -7.05192 -5.96176 -3.29826 1.33166 2.20909 3.13184 3.33369 3.47310 3.49748 3.52412 3.96722 4.02060 4.20097 4.28738 4.41277 4.43011 4.52635 4.58025 4.74354 4.82625 4.88008 4.91288 5.02831 5.07754 5.24200 5.27680 5.36476 5.37072 5.45754 5.49866 5.56605 5.58277 5.69973 5.76741 5.81366 5.94961 5.97424 5.98404 6.09569 6.23339 6.32895 6.51419 6.52433 6.60472 6.63726 6.81784 6.88995 7.31654 7.64149 7.91617 7.95771 8.30346 8.91236 9.70549 10.06499 11.19394 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.027778 B = 0.002071 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.732059 B =13516.800884 C =13965.998950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 0.879 3.121 4 H -0.289 1.289 5 H -0.269 1.269 6 H -0.303 1.303 7 C -0.261 4.261 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.142 4.142 12 C 0.148 3.852 13 N -0.690 5.690 14 C 0.504 3.496 15 O -0.523 6.523 16 C 0.509 3.491 17 O -0.516 6.516 18 N -0.701 5.701 19 C 0.143 3.857 20 H 0.099 0.901 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.148 4.148 24 C 0.096 3.904 25 H 0.086 0.914 26 F -0.209 7.209 27 C -0.159 4.159 28 C -0.142 4.142 29 C 0.152 3.848 30 H 0.263 0.737 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.410 0.590 37 H 0.413 0.587 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.720 -6.971 16.698 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.709 3.291 4 H -0.217 1.217 5 H -0.194 1.194 6 H -0.231 1.231 7 C -0.389 4.389 8 H 0.105 0.895 9 N -0.330 5.330 10 C 0.004 3.996 11 C -0.182 4.182 12 C 0.045 3.955 13 N -0.341 5.341 14 C 0.283 3.717 15 O -0.400 6.400 16 C 0.289 3.711 17 O -0.391 6.391 18 N -0.354 5.354 19 C 0.039 3.961 20 H 0.117 0.883 21 C -0.167 4.167 22 C -0.155 4.155 23 C -0.186 4.186 24 C 0.059 3.941 25 H 0.104 0.896 26 F -0.190 7.190 27 C -0.198 4.198 28 C -0.181 4.181 29 C 0.026 3.974 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.245 0.755 37 H 0.249 0.751 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 25.495 -6.912 16.662 31.231 hybrid contribution 0.380 0.972 0.062 1.045 sum 25.875 -5.940 16.724 31.376 Atomic orbital electron populations 1.69858 1.05723 1.26570 1.52662 1.25229 0.95215 0.97573 0.99637 0.87007 0.80269 0.84867 0.76953 1.21681 1.19435 1.23108 1.18921 0.85896 0.95099 1.38987 0.89498 1.44431 1.09963 1.31201 1.47369 1.21390 0.97479 0.91890 0.88880 1.22497 0.97632 0.98438 0.99681 1.21189 0.95235 0.94025 0.85018 1.46142 1.33292 1.23504 1.31207 1.20023 0.81570 0.86012 0.84066 1.90764 1.61991 1.20227 1.66990 1.20379 0.80709 0.85835 0.84160 1.90778 1.61288 1.20267 1.66777 1.45815 1.34523 1.23806 1.31232 1.21030 0.95562 0.93421 0.86066 0.88339 1.21855 1.00743 0.97707 0.96418 1.21451 0.98410 0.98377 0.97267 1.22187 0.98895 0.97429 1.00104 1.21505 0.88285 0.92984 0.91296 0.89611 1.92830 1.64611 1.80572 1.81009 1.22558 0.99458 0.99784 0.98005 1.22360 0.99911 0.97449 0.98427 1.20858 0.92624 0.91321 0.92633 0.92764 0.95284 0.90624 0.91265 0.92301 0.89451 0.75452 0.75084 0.90866 0.90511 0.90688 0.90848 0.89894 0.90444 0.89970 0.89654 0.91016 0.91878 0.91185 0.95604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.66 13.97 55.49 0.78 -26.89 16 2 C 0.02 0.65 5.21 -17.43 -0.09 0.56 16 3 Si 0.88 22.39 24.36 -169.99 -4.14 18.25 16 4 H -0.29 -7.17 6.68 56.52 0.38 -6.79 16 5 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 6 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 7 C -0.26 -7.19 10.05 -15.06 -0.15 -7.34 16 8 H 0.09 2.54 8.04 -52.49 -0.42 2.11 16 9 N -0.61 -14.12 2.79 -172.05 -0.48 -14.60 16 10 C 0.13 2.85 4.23 -3.49 -0.01 2.84 16 11 C -0.14 -2.60 5.67 -26.38 -0.15 -2.75 16 12 C 0.15 2.35 2.41 -67.89 -0.16 2.18 16 13 N -0.69 -9.50 5.07 -54.20 -0.27 -9.77 16 14 C 0.50 7.02 7.85 -11.59 -0.09 6.93 16 15 O -0.52 -8.33 16.14 5.50 0.09 -8.24 16 16 C 0.51 6.29 7.85 -11.59 -0.09 6.19 16 17 O -0.52 -7.42 16.14 5.49 0.09 -7.33 16 18 N -0.70 -6.53 5.07 -54.24 -0.27 -6.81 16 19 C 0.14 1.14 2.33 -67.93 -0.16 0.98 16 20 H 0.10 1.02 7.24 -51.93 -0.38 0.64 16 21 C -0.13 -0.70 5.39 -26.74 -0.14 -0.85 16 22 C -0.12 -0.57 5.80 -26.73 -0.16 -0.73 16 23 C -0.15 -0.64 5.72 -26.73 -0.15 -0.80 16 24 C 0.10 0.59 4.12 -26.73 -0.11 0.48 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 26 F -0.21 -1.99 16.05 2.25 0.04 -1.95 16 27 C -0.16 -1.11 5.29 -26.73 -0.14 -1.25 16 28 C -0.14 -2.17 5.55 -26.61 -0.15 -2.32 16 29 C 0.15 2.85 6.51 -3.71 -0.02 2.83 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.03 0.64 7.09 -51.93 -0.37 0.27 16 32 H 0.08 1.83 4.36 -51.93 -0.23 1.60 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 36 H 0.41 5.10 8.07 -40.82 -0.33 4.78 16 37 H 0.41 3.35 8.07 -40.82 -0.33 3.02 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.45 7.80 -51.93 -0.41 0.04 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 1.29 7.92 -51.93 -0.41 0.88 16 49 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -32.97 384.25 -8.13 -41.10 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.95 Total: 3.50 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.79 Total: 6.96 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.26 Total: -58.07 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.18 Total: -15.57 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.97 -8.13 -41.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345858550.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.110 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds