Wall clock time and date at job start Wed Apr 1 2020 01:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00357 * 2 1 4 4 H 1.48495 * 109.47088 * 84.61336 * 3 2 1 5 5 H 1.48493 * 109.47094 * 204.61657 * 3 2 1 6 6 H 1.48506 * 109.46740 * 324.61370 * 3 2 1 7 7 C 1.38819 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00078 * 22.58756 * 7 2 1 9 9 N 1.36939 * 119.99763 * 202.59164 * 7 2 1 10 10 C 1.46924 * 120.63302 * 24.91771 * 9 7 2 11 11 C 1.53620 * 108.54439 * 126.36917 * 10 9 7 12 12 C 1.53050 * 109.23836 * 54.85650 * 11 10 9 13 13 N 1.46505 * 109.45354 * 178.49060 * 12 11 10 14 14 C 1.34772 * 119.99958 * 275.06080 * 13 12 11 15 15 O 1.21346 * 120.00148 * 0.02562 * 14 13 12 16 16 C 1.49451 * 120.00172 * 180.02562 * 14 13 12 17 17 O 1.21353 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34772 * 120.00540 * 180.02562 * 16 14 13 19 19 C 1.46498 * 120.00498 * 179.97438 * 18 16 14 20 20 H 1.09000 * 109.47154 * 325.00992 * 19 18 16 21 21 C 1.52995 * 109.47542 * 205.00364 * 19 18 16 22 22 C 1.52996 * 109.47088 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47468 * 60.00036 * 22 21 19 24 24 C 1.52995 * 109.46937 * 300.00056 * 23 22 21 25 25 H 1.09004 * 109.47388 * 180.02562 * 24 23 22 26 26 F 1.39901 * 109.47263 * 299.99653 * 24 23 22 27 27 C 1.52998 * 109.47453 * 59.99728 * 24 23 22 28 28 C 1.53032 * 109.53642 * 298.50818 * 12 11 10 29 29 C 1.46926 * 120.62747 * 205.20118 * 9 7 2 30 30 H 0.97004 * 120.00185 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58551 * 246.20736 * 10 9 7 32 32 H 1.08996 * 109.58461 * 6.62586 * 10 9 7 33 33 H 1.08993 * 109.63318 * 294.86530 * 11 10 9 34 34 H 1.08997 * 109.45818 * 174.74065 * 11 10 9 35 35 H 1.08995 * 109.46081 * 58.53772 * 12 11 10 36 36 H 0.96997 * 119.99700 * 95.07058 * 13 12 11 37 37 H 0.96998 * 119.99581 * 0.02562 * 18 16 14 38 38 H 1.09000 * 109.46918 * 299.99879 * 21 19 18 39 39 H 1.09000 * 109.46915 * 59.99792 * 21 19 18 40 40 H 1.09002 * 109.47241 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.46937 * 299.99616 * 22 21 19 42 42 H 1.08997 * 109.46959 * 59.99599 * 23 22 21 43 43 H 1.08999 * 109.47294 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.47607 * 179.97438 * 27 24 23 45 45 H 1.09000 * 109.46768 * 60.00263 * 27 24 23 46 46 H 1.08996 * 109.50263 * 301.41731 * 28 12 11 47 47 H 1.09004 * 109.52206 * 181.33573 * 28 12 11 48 48 H 1.09006 * 109.58759 * 353.37025 * 29 9 7 49 49 H 1.08998 * 109.58654 * 113.65449 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3839 2.1121 1.3938 5 1 3.6000 1.4099 -0.5832 6 1 1.5092 2.6171 -0.8108 7 6 2.0102 -1.2022 -0.0005 8 1 1.5323 -2.1015 -0.3602 9 7 3.3007 -1.2479 0.4550 10 6 3.7910 -0.2510 1.4165 11 6 4.3919 -0.9893 2.6222 12 6 5.4613 -1.9684 2.1322 13 7 6.0628 -2.6492 3.2816 14 6 7.0805 -2.0715 3.9502 15 8 7.4981 -0.9871 3.6005 16 6 7.6945 -2.7662 5.1223 17 8 7.2772 -3.8508 5.4717 18 7 8.7118 -2.1882 5.7912 19 6 9.3134 -2.8690 6.9405 20 1 8.5425 -3.4164 7.4829 21 6 9.9531 -1.8345 7.8686 22 6 10.5818 -2.5456 9.0685 23 6 11.6526 -3.5225 8.5788 24 6 11.0130 -4.5570 7.6507 25 1 11.7757 -5.2533 7.3021 26 9 10.0239 -5.2599 8.3470 27 6 10.3842 -3.8460 6.4507 28 6 4.8210 -3.0034 1.2044 29 6 4.2233 -2.2912 -0.0131 30 1 -0.4850 0.8401 -0.0004 31 1 4.5552 0.3667 0.9447 32 1 2.9631 0.3767 1.7461 33 1 3.6077 -1.5380 3.1437 34 1 4.8440 -0.2669 3.3019 35 1 6.2326 -1.4220 1.5896 36 1 5.7288 -3.5159 3.5612 37 1 9.0452 -1.3211 5.5121 38 1 10.7240 -1.2872 7.3262 39 1 9.1903 -1.1382 8.2171 40 1 11.0372 -1.8085 9.7300 41 1 9.8112 -3.0931 9.6111 42 1 12.4232 -2.9749 8.0362 43 1 12.1003 -4.0294 9.4336 44 1 9.9288 -4.5830 5.7892 45 1 11.1548 -3.2984 5.9082 46 1 4.0327 -3.5331 1.7392 47 1 5.5782 -3.7146 0.8744 48 1 3.6807 -3.0101 -0.6271 49 1 5.0207 -1.8368 -0.6012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345858550.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:08 Heat of formation + Delta-G solvation = -134.985719 kcal Electronic energy + Delta-G solvation = -30250.750625 eV Core-core repulsion = 25933.048730 eV Total energy + Delta-G solvation = -4317.701895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.63489 -41.90585 -40.36009 -39.13458 -38.56095 -36.35046 -35.14589 -34.05185 -31.99201 -31.89789 -31.52566 -30.65996 -27.39985 -25.72671 -24.48909 -23.87884 -23.65048 -22.75111 -21.54188 -21.34802 -20.72667 -19.48809 -18.76941 -18.23458 -17.57335 -17.38729 -17.05497 -16.61849 -16.42730 -16.22382 -15.98434 -15.86730 -15.66849 -15.36484 -15.26376 -15.05208 -14.67223 -14.51521 -14.24784 -14.12922 -13.90340 -13.69417 -13.45574 -13.30422 -13.25380 -12.92022 -12.70382 -12.56701 -12.55420 -12.25982 -12.10825 -12.03971 -11.78803 -11.74378 -11.52381 -11.49132 -11.46123 -11.26112 -10.82606 -10.64662 -10.32150 -10.22514 -9.00942 -8.16770 -5.45777 0.28601 1.23122 1.29813 1.40967 1.49347 2.08313 2.41091 2.52864 3.02536 3.29333 3.37013 3.52842 3.55407 3.74540 3.76645 3.86560 3.87265 3.96209 4.12716 4.17133 4.27760 4.28644 4.33052 4.42777 4.45115 4.60444 4.61425 4.64381 4.78531 4.82402 4.89585 4.91858 4.95628 5.02907 5.05756 5.06031 5.13626 5.16763 5.18625 5.25190 5.28912 5.40121 5.41916 5.84770 5.89243 6.12279 6.31981 6.69703 6.89520 6.89934 7.61545 8.01101 9.02591 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.027778 B = 0.002071 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.732059 B =13516.800884 C =13965.998950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.037 4.037 3 Si 0.939 3.061 4 H -0.281 1.281 5 H -0.259 1.259 6 H -0.311 1.311 7 C -0.245 4.245 8 H 0.059 0.941 9 N -0.620 5.620 10 C 0.126 3.874 11 C -0.133 4.133 12 C 0.158 3.842 13 N -0.684 5.684 14 C 0.506 3.494 15 O -0.541 6.541 16 C 0.512 3.488 17 O -0.541 6.541 18 N -0.684 5.684 19 C 0.141 3.859 20 H 0.070 0.930 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.143 4.143 24 C 0.087 3.913 25 H 0.104 0.896 26 F -0.232 7.232 27 C -0.155 4.155 28 C -0.129 4.129 29 C 0.145 3.855 30 H 0.261 0.739 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.418 0.582 37 H 0.421 0.579 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.108 0.892 46 H 0.068 0.932 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.471 -6.742 17.645 35.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.231 4.231 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.183 1.183 6 H -0.240 1.240 7 C -0.374 4.374 8 H 0.077 0.923 9 N -0.344 5.344 10 C 0.000 4.000 11 C -0.173 4.173 12 C 0.054 3.946 13 N -0.335 5.335 14 C 0.287 3.713 15 O -0.419 6.419 16 C 0.292 3.708 17 O -0.418 6.418 18 N -0.337 5.337 19 C 0.037 3.963 20 H 0.088 0.912 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.181 4.181 24 C 0.051 3.949 25 H 0.122 0.878 26 F -0.214 7.214 27 C -0.194 4.194 28 C -0.168 4.168 29 C 0.020 3.980 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.255 0.745 37 H 0.259 0.741 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.116 0.884 48 H 0.087 0.913 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 29.323 -6.697 17.638 34.868 hybrid contribution -0.738 0.808 -0.206 1.113 sum 28.586 -5.889 17.432 33.996 Atomic orbital electron populations 1.69978 1.07299 1.27102 1.55639 1.25826 0.95791 1.00752 1.00767 0.86017 0.79145 0.80856 0.77117 1.20809 1.18324 1.23986 1.18901 0.87604 0.93926 1.36998 0.92275 1.44559 1.09325 1.32519 1.48020 1.21376 0.96759 0.91894 0.89938 1.22338 0.98105 0.98832 0.98039 1.20934 0.94392 0.93718 0.85558 1.45950 1.33204 1.23675 1.30701 1.20262 0.81239 0.85677 0.84160 1.90756 1.62564 1.21023 1.67556 1.20105 0.81291 0.85495 0.83925 1.90779 1.62320 1.21274 1.67448 1.45820 1.33241 1.23838 1.30756 1.21156 0.95206 0.94278 0.85674 0.91178 1.21849 1.01118 0.96946 0.96187 1.21467 0.98214 0.98752 0.97082 1.22193 0.98912 0.96836 1.00137 1.21808 0.88017 0.93798 0.91288 0.87781 1.92787 1.65800 1.81237 1.81545 1.22528 0.99530 0.99145 0.98201 1.22197 1.00537 0.97358 0.96714 1.21090 0.92184 0.90371 0.94359 0.93029 0.94680 0.93160 0.92018 0.91710 0.89602 0.74511 0.74089 0.88690 0.90738 0.88908 0.92713 0.87605 0.89817 0.92331 0.87320 0.91349 0.88371 0.91308 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.07 13.97 21.65 0.30 -59.77 16 2 C -0.04 -2.14 5.21 84.86 0.44 -1.70 16 3 Si 0.94 46.90 24.36 68.60 1.67 48.57 16 4 H -0.28 -13.49 6.68 99.48 0.66 -12.83 16 5 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 6 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 7 C -0.24 -13.68 10.05 84.03 0.84 -12.84 16 8 H 0.06 3.57 8.04 -2.91 -0.02 3.54 16 9 N -0.62 -28.44 2.79 -698.26 -1.95 -30.39 16 10 C 0.13 5.39 4.23 86.51 0.37 5.75 16 11 C -0.13 -4.66 5.67 30.82 0.17 -4.48 16 12 C 0.16 4.61 2.41 45.02 0.11 4.72 16 13 N -0.68 -17.36 5.07 -443.74 -2.25 -19.61 16 14 C 0.51 13.15 7.85 87.27 0.69 13.83 16 15 O -0.54 -16.05 16.14 -3.23 -0.05 -16.10 16 16 C 0.51 12.00 7.85 87.27 0.69 12.68 16 17 O -0.54 -15.24 16.14 -3.26 -0.05 -15.29 16 18 N -0.68 -11.61 5.07 -443.87 -2.25 -13.87 16 19 C 0.14 2.05 2.33 44.99 0.10 2.16 16 20 H 0.07 1.46 7.24 -2.39 -0.02 1.44 16 21 C -0.12 -1.05 5.39 30.59 0.16 -0.88 16 22 C -0.12 -0.88 5.80 30.59 0.18 -0.70 16 23 C -0.14 -0.83 5.72 30.59 0.17 -0.66 16 24 C 0.09 0.92 4.12 30.59 0.13 1.05 16 25 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 26 F -0.23 -4.35 16.05 44.97 0.72 -3.63 16 27 C -0.16 -1.90 5.29 30.59 0.16 -1.74 16 28 C -0.13 -3.60 5.55 30.67 0.17 -3.43 16 29 C 0.15 5.17 6.51 86.36 0.56 5.73 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.04 1.47 7.09 -2.39 -0.02 1.45 16 32 H 0.05 2.40 4.36 -2.39 -0.01 2.39 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 2.62 7.58 -2.39 -0.02 2.60 16 36 H 0.42 9.57 8.07 -92.71 -0.75 8.82 16 37 H 0.42 5.84 8.07 -92.71 -0.75 5.09 16 38 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.05 0.62 7.80 -2.39 -0.02 0.60 16 42 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 48 H 0.07 2.45 7.92 -2.38 -0.02 2.43 16 49 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.04 384.25 0.47 -72.57 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.62 Total: 18.03 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 4.95 Total: 19.49 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -6.15 Total: -123.64 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.10 Total: -31.40 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.72 Total: -3.63 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.67 Total: 48.57 kcal Total: -73.04 0.47 -72.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345858550.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.413 kcal (2) G-P(sol) polarization free energy of solvation -73.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds