Wall clock time and date at job start Wed Apr 1 2020 01:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99699 * 2 1 4 4 H 1.48493 * 109.47198 * 269.99642 * 3 2 1 5 5 H 1.48496 * 109.47233 * 30.00082 * 3 2 1 6 6 H 1.48501 * 109.46933 * 149.99925 * 3 2 1 7 7 C 1.38811 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99634 * 197.36360 * 7 2 1 9 9 N 1.36936 * 120.00352 * 17.37306 * 7 2 1 10 10 C 1.46924 * 120.63032 * 207.68402 * 9 7 2 11 11 C 1.53192 * 108.77589 * 233.58266 * 10 9 7 12 12 C 1.53045 * 109.31110 * 305.36715 * 11 10 9 13 13 N 1.46497 * 109.45597 * 181.38309 * 12 11 10 14 14 C 1.34776 * 119.99646 * 155.27304 * 13 12 11 15 15 O 1.21359 * 120.00387 * 359.72791 * 14 13 12 16 16 C 1.49454 * 120.00383 * 179.72478 * 14 13 12 17 17 O 1.21356 * 119.99741 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00361 * 180.02562 * 16 14 13 19 19 C 1.46502 * 119.99873 * 180.02562 * 18 16 14 20 20 H 1.08998 * 109.47389 * 34.99556 * 19 18 16 21 21 C 1.52993 * 109.46980 * 154.99476 * 19 18 16 22 22 C 1.53000 * 109.47221 * 179.97438 * 21 19 18 23 23 C 1.53002 * 109.47386 * 300.00416 * 22 21 19 24 24 C 1.53002 * 109.47136 * 59.99478 * 23 22 21 25 25 H 1.09004 * 109.46693 * 59.99956 * 24 23 22 26 26 F 1.39893 * 109.47068 * 179.97438 * 24 23 22 27 27 C 1.53000 * 109.47409 * 300.00508 * 24 23 22 28 28 C 1.53037 * 109.53857 * 61.36321 * 12 11 10 29 29 C 1.46925 * 120.63042 * 27.65473 * 9 7 2 30 30 H 0.97001 * 120.00548 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58576 * 113.79463 * 10 9 7 32 32 H 1.08998 * 109.70517 * 353.44208 * 10 9 7 33 33 H 1.08991 * 109.49871 * 185.41431 * 11 10 9 34 34 H 1.09000 * 109.49512 * 65.31487 * 11 10 9 35 35 H 1.08997 * 109.45608 * 301.35481 * 12 11 10 36 36 H 0.96994 * 120.00620 * 334.99994 * 13 12 11 37 37 H 0.96994 * 119.99699 * 359.97438 * 18 16 14 38 38 H 1.08997 * 109.47486 * 299.99914 * 21 19 18 39 39 H 1.09006 * 109.47179 * 60.00450 * 21 19 18 40 40 H 1.09005 * 109.47107 * 59.99958 * 22 21 19 41 41 H 1.08997 * 109.47359 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.47314 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.46970 * 299.99773 * 23 22 21 44 44 H 1.08999 * 109.46427 * 300.00082 * 27 24 23 45 45 H 1.08997 * 109.47359 * 179.97438 * 27 24 23 46 46 H 1.08997 * 109.49818 * 58.58427 * 28 12 11 47 47 H 1.08998 * 109.50067 * 178.68255 * 28 12 11 48 48 H 1.08997 * 109.59026 * 246.20684 * 29 9 7 49 49 H 1.08999 * 109.58347 * 6.63233 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2797 9 7 1.3724 -2.3612 -0.3530 10 6 1.8194 -3.6546 0.1817 11 6 2.0744 -4.6102 -0.9881 12 6 0.8186 -4.6903 -1.8593 13 7 1.0478 -5.6287 -2.9606 14 6 0.0035 -6.2447 -3.5493 15 8 -1.1262 -6.0258 -3.1637 16 6 0.2366 -7.1975 -4.6769 17 8 1.3662 -7.4161 -5.0628 18 7 -0.8077 -7.8131 -5.2659 19 6 -0.5791 -8.7475 -6.3708 20 1 0.3515 -9.2893 -6.2019 21 6 -1.7406 -9.7403 -6.4477 22 6 -1.5021 -10.7158 -7.6021 23 6 -1.4084 -9.9377 -8.9162 24 6 -0.2468 -8.9448 -8.8393 25 1 0.6838 -9.4867 -8.6706 26 9 -0.1608 -8.2339 -10.0410 27 6 -0.4853 -7.9694 -7.6849 28 6 0.5007 -3.3053 -2.4274 29 6 0.2278 -2.3349 -1.2738 30 1 -0.4851 0.8400 -0.0004 31 1 1.0470 -4.0686 0.8300 32 1 2.7395 -3.5192 0.7501 33 1 2.3136 -5.6013 -0.6028 34 1 2.9082 -4.2404 -1.5849 35 1 -0.0204 -5.0364 -1.2558 36 1 1.9506 -5.8038 -3.2689 37 1 -1.7106 -7.6381 -4.9576 38 1 -1.8076 -10.2944 -5.5115 39 1 -2.6712 -9.1985 -6.6168 40 1 -0.5715 -11.2576 -7.4336 41 1 -2.3298 -11.4228 -7.6572 42 1 -1.2381 -10.6326 -9.7385 43 1 -2.3390 -9.3959 -9.0848 44 1 -1.4159 -7.4276 -7.8535 45 1 0.3424 -7.2623 -7.6298 46 1 1.3493 -2.9477 -3.0106 47 1 -0.3801 -3.3675 -3.0665 48 1 -0.6743 -2.6412 -0.7443 49 1 0.0986 -1.3266 -1.6673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345858552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:14 Heat of formation + Delta-G solvation = -141.202985 kcal Electronic energy + Delta-G solvation = -30001.880686 eV Core-core repulsion = 25683.909190 eV Total energy + Delta-G solvation = -4317.971496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.66817 -41.90619 -40.36222 -39.04506 -38.65552 -36.28413 -35.17134 -33.91124 -31.84346 -31.41122 -31.29058 -30.55629 -27.40008 -25.83442 -23.96964 -23.88003 -23.54582 -22.71973 -21.58919 -21.35638 -20.83779 -19.50108 -18.67633 -18.14158 -17.39689 -17.16935 -16.96512 -16.71885 -16.55437 -16.10304 -15.95064 -15.68131 -15.46538 -15.36919 -15.05394 -14.95120 -14.73798 -14.64384 -14.24494 -14.11662 -13.87761 -13.47047 -13.22734 -13.10501 -13.04146 -12.88803 -12.62379 -12.61221 -12.27168 -12.15407 -12.10909 -12.05164 -11.86627 -11.74947 -11.61566 -11.58774 -11.41091 -11.26519 -10.68280 -10.59745 -10.40216 -10.18680 -8.72665 -7.88168 -5.33540 0.29426 1.24222 1.47483 1.49226 1.57665 2.09415 2.51176 2.53768 3.27038 3.32757 3.44938 3.54848 3.65795 3.68088 3.79802 3.81520 3.96598 4.00847 4.12119 4.27210 4.27553 4.29231 4.44371 4.47050 4.54084 4.63729 4.72346 4.80799 4.83896 4.88399 4.98110 5.02456 5.02712 5.10415 5.12286 5.16720 5.19521 5.20728 5.29383 5.32807 5.40505 5.45177 5.63658 5.69150 5.89922 6.32768 6.38202 6.70185 6.91542 7.13124 7.83964 8.35760 9.18827 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.001974 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.321230 B =14180.793060 C =14624.813272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.260 4.260 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.143 3.857 11 C -0.125 4.125 12 C 0.160 3.840 13 N -0.682 5.682 14 C 0.502 3.498 15 O -0.545 6.545 16 C 0.516 3.484 17 O -0.537 6.537 18 N -0.686 5.686 19 C 0.149 3.851 20 H 0.092 0.908 21 C -0.127 4.127 22 C -0.107 4.107 23 C -0.143 4.143 24 C 0.091 3.909 25 H 0.095 0.905 26 F -0.231 7.231 27 C -0.157 4.157 28 C -0.133 4.133 29 C 0.182 3.818 30 H 0.249 0.751 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.418 0.582 37 H 0.420 0.580 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.052 0.948 48 H -0.004 1.004 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -25.158 -16.011 29.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.390 4.390 8 H 0.090 0.910 9 N -0.334 5.334 10 C 0.017 3.983 11 C -0.164 4.164 12 C 0.056 3.944 13 N -0.334 5.334 14 C 0.282 3.718 15 O -0.423 6.423 16 C 0.296 3.704 17 O -0.414 6.414 18 N -0.338 5.338 19 C 0.045 3.955 20 H 0.110 0.890 21 C -0.164 4.164 22 C -0.145 4.145 23 C -0.181 4.181 24 C 0.054 3.946 25 H 0.113 0.887 26 F -0.212 7.212 27 C -0.196 4.196 28 C -0.173 4.173 29 C 0.056 3.944 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.255 0.745 37 H 0.258 0.742 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.014 0.986 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.246 -25.021 -16.000 29.784 hybrid contribution 0.109 1.655 0.053 1.659 sum -2.138 -23.366 -15.947 28.370 Atomic orbital electron populations 1.70189 1.06750 1.25857 1.55460 1.25832 0.96030 1.01667 1.01383 0.85261 0.78192 0.79517 0.77454 1.21410 1.22391 1.19010 1.19555 0.93142 0.85871 1.40455 0.90970 1.44362 1.35703 1.02550 1.50756 1.21030 0.98126 0.85401 0.93779 1.22181 0.96020 1.00778 0.97452 1.20897 0.99358 0.87471 0.86703 1.45955 1.10265 1.42516 1.34662 1.20372 0.85406 0.82066 0.83925 1.90772 1.23106 1.64248 1.64172 1.20007 0.85607 0.81545 0.83224 1.90754 1.23060 1.63195 1.64439 1.45835 1.10087 1.43543 1.34355 1.21116 1.01637 0.89210 0.83559 0.88988 1.21899 0.96916 0.96723 1.00910 1.21409 1.04239 0.97269 0.91544 1.22173 0.97721 0.98091 1.00133 1.21697 1.01932 0.91818 0.79135 0.88717 1.92789 1.97825 1.81302 1.49268 1.22504 1.03409 0.98996 0.94680 1.22344 1.00564 0.95553 0.98852 1.20489 0.87995 0.97378 0.88589 0.94149 0.96422 0.91360 0.88832 0.90899 0.90847 0.74463 0.74200 0.89459 0.89953 0.90393 0.88581 0.89534 0.90509 0.90173 0.92430 0.92285 0.92972 0.98557 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.96 11.19 21.65 0.24 -55.72 16 2 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16 3 Si 0.97 44.91 29.59 68.60 2.03 46.94 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.26 -14.11 9.59 84.03 0.81 -13.31 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 9 N -0.61 -30.23 2.99 -699.10 -2.09 -32.33 16 10 C 0.14 5.59 6.51 86.36 0.56 6.15 16 11 C -0.12 -3.80 5.55 30.67 0.17 -3.63 16 12 C 0.16 5.24 2.41 45.02 0.11 5.35 16 13 N -0.68 -18.70 5.07 -443.73 -2.25 -20.95 16 14 C 0.50 14.03 7.85 87.27 0.69 14.72 16 15 O -0.55 -17.94 16.14 -3.27 -0.05 -18.00 16 16 C 0.52 12.19 7.85 87.27 0.69 12.87 16 17 O -0.54 -14.40 16.14 -3.26 -0.05 -14.45 16 18 N -0.69 -11.79 5.07 -443.86 -2.25 -14.04 16 19 C 0.15 1.92 2.45 44.99 0.11 2.03 16 20 H 0.09 1.32 7.58 -2.39 -0.02 1.30 16 21 C -0.13 -0.87 5.39 30.59 0.16 -0.70 16 22 C -0.11 -0.49 5.92 30.60 0.18 -0.31 16 23 C -0.14 -1.10 5.66 30.60 0.17 -0.92 16 24 C 0.09 1.17 3.87 30.59 0.12 1.29 16 25 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 26 F -0.23 -4.48 17.08 44.97 0.77 -3.71 16 27 C -0.16 -2.37 5.23 30.59 0.16 -2.21 16 28 C -0.13 -5.21 5.65 30.67 0.17 -5.04 16 29 C 0.18 8.98 5.31 86.36 0.46 9.43 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 2.55 7.94 -2.39 -0.02 2.53 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 36 H 0.42 9.95 8.07 -92.71 -0.75 9.20 16 37 H 0.42 6.39 8.07 -92.71 -0.75 5.65 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.08 0.29 8.14 -2.38 -0.02 0.28 16 41 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 43 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.06 3.17 6.04 -2.39 -0.01 3.15 16 Total: -1.00 -69.64 392.37 0.78 -68.86 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.53 Total: 20.26 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 4.97 Total: 23.14 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -6.35 Total: -123.04 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.11 Total: -32.45 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.77 Total: -3.71 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.64 0.78 -68.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345858552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.347 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds