Wall clock time and date at job start Wed Apr 1 2020 00:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00109 * 2 1 4 4 H 1.48501 * 109.46988 * 269.99784 * 3 2 1 5 5 H 1.48504 * 109.46883 * 29.99406 * 3 2 1 6 6 H 1.48496 * 109.47408 * 149.99512 * 3 2 1 7 7 C 1.38816 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00060 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99827 * 179.72677 * 9 7 2 11 11 C 1.53007 * 109.46833 * 174.98320 * 10 9 7 12 12 H 1.08997 * 109.58782 * 59.67986 * 11 10 9 13 13 C 1.53194 * 109.58512 * 299.38844 * 11 10 9 14 14 C 1.53074 * 109.29139 * 185.72099 * 13 11 10 15 15 C 1.53035 * 109.65660 * 61.16005 * 14 13 11 16 16 C 1.53188 * 109.31365 * 298.69159 * 15 14 13 17 17 N 1.46927 * 108.77399 * 54.64124 * 16 15 14 18 18 C 1.34779 * 120.63477 * 126.41226 * 17 16 15 19 19 O 1.21280 * 120.00200 * 185.40845 * 18 17 16 20 20 C 1.50694 * 119.99765 * 5.41087 * 18 17 16 21 21 C 1.50695 * 109.47308 * 180.02562 * 20 18 17 22 22 C 1.34240 * 126.50223 * 265.02752 * 21 20 18 23 23 N 1.36824 * 109.93301 * 179.97438 * 22 21 20 24 24 H 0.96997 * 125.06523 * 180.02562 * 23 22 21 25 25 C 1.37694 * 109.87479 * 359.97438 * 23 22 21 26 26 C 1.39121 * 133.50730 * 180.02562 * 25 23 22 27 27 C 1.37751 * 119.77965 * 179.30793 * 26 25 23 28 28 C 1.38839 * 120.66029 * 0.54454 * 27 26 25 29 29 C 1.36622 * 120.52801 * 359.66907 * 28 27 26 30 30 C 1.39631 * 119.76714 * 359.97438 * 29 28 27 31 31 H 0.96997 * 120.00192 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99951 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47129 * 294.97994 * 10 9 7 34 34 H 1.09003 * 109.47482 * 54.97947 * 10 9 7 35 35 H 1.08999 * 109.49791 * 305.53589 * 13 11 10 36 36 H 1.09001 * 109.49299 * 65.62680 * 13 11 10 37 37 H 1.09004 * 109.34783 * 301.13035 * 14 13 11 38 38 H 1.09000 * 109.43528 * 181.23987 * 14 13 11 39 39 H 1.09005 * 109.49633 * 178.74855 * 15 14 13 40 40 H 1.08996 * 109.52955 * 58.66370 * 15 14 13 41 41 H 1.09001 * 109.59224 * 294.85656 * 16 15 14 42 42 H 1.08999 * 109.58759 * 174.42265 * 16 15 14 43 43 H 1.09012 * 109.46973 * 299.99833 * 20 18 17 44 44 H 1.08998 * 109.47749 * 59.99925 * 20 18 17 45 45 H 1.08000 * 125.03176 * 359.92051 * 22 21 20 46 46 H 1.08007 * 120.11283 * 359.97172 * 26 25 23 47 47 H 1.07992 * 119.67340 * 180.19406 * 27 26 25 48 48 H 1.07997 * 119.73022 * 179.64734 * 28 27 26 49 49 H 1.08001 * 120.11374 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 -0.0049 11 6 1.0691 -4.8172 0.1224 12 1 0.3691 -4.7940 -0.7127 13 6 0.2996 -4.6937 1.4413 14 6 -0.5830 -5.9302 1.6295 15 6 0.2933 -7.1832 1.6935 16 6 1.0601 -7.3330 0.3758 17 7 1.8012 -6.0912 0.1162 18 6 3.1272 -6.1200 -0.1235 19 8 3.7453 -5.0830 -0.2390 20 6 3.8418 -7.4409 -0.2480 21 6 5.3051 -7.1974 -0.5129 22 6 5.9046 -7.1643 -1.7135 23 7 7.2416 -6.9172 -1.5607 24 1 7.8819 -6.8473 -2.2860 25 6 7.5427 -6.7813 -0.2240 26 6 8.7208 -6.5286 0.4715 27 6 8.6971 -6.4336 1.8456 28 6 7.5100 -6.5987 2.5464 29 6 6.3424 -6.8520 1.8837 30 6 6.3421 -6.9450 0.4905 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6122 -3.7523 -0.9388 34 1 2.7537 -3.6784 0.8340 35 1 1.0053 -4.6233 2.2690 36 1 -0.3233 -3.7996 1.4167 37 1 -1.2734 -6.0122 0.7900 38 1 -1.1482 -5.8346 2.5566 39 1 -0.3359 -8.0595 1.8498 40 1 1.0006 -7.0915 2.5177 41 1 0.3575 -7.5159 -0.4372 42 1 1.7587 -8.1662 0.4523 43 1 3.7294 -8.0036 0.6789 44 1 3.4127 -8.0099 -1.0727 45 1 5.4056 -7.3117 -2.6599 46 1 9.6490 -6.3966 -0.0647 47 1 9.6121 -6.2342 2.3835 48 1 7.5097 -6.5268 3.6239 49 1 5.4227 -6.9789 2.4355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480365369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:07 Heat of formation + Delta-G solvation = 48.834928 kcal Electronic energy + Delta-G solvation = -30041.453738 eV Core-core repulsion = 26162.492130 eV Total energy + Delta-G solvation = -3878.961609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32661 -40.10243 -37.19175 -36.83119 -34.73412 -33.19199 -32.55850 -31.83941 -30.18740 -29.61281 -29.27637 -27.36562 -25.79348 -24.24976 -23.05282 -22.85471 -21.78429 -21.21603 -20.85280 -19.60018 -18.59947 -17.77994 -17.00343 -16.58278 -16.40638 -15.59594 -15.53261 -15.06258 -14.54479 -14.38250 -14.28101 -14.13453 -13.98403 -13.83401 -13.52077 -13.29074 -13.17691 -12.98723 -12.64847 -12.58696 -12.40103 -12.00917 -11.82952 -11.67080 -11.54088 -11.36314 -10.94069 -10.84480 -10.81979 -10.73111 -10.62861 -10.44315 -10.27417 -9.91403 -9.62930 -9.56527 -8.76193 -8.60679 -8.20738 -8.17982 -7.64998 -6.68817 -5.60682 -2.86175 1.13579 1.64937 2.57443 2.99011 3.08807 3.31073 3.54411 3.58954 3.62270 3.94366 4.67675 4.71577 4.73820 4.78733 4.83109 4.93404 4.95131 5.07065 5.11245 5.18231 5.23851 5.32636 5.42618 5.46983 5.50791 5.52018 5.66703 5.68971 5.74130 5.81175 5.86712 5.88519 5.91487 6.08571 6.09335 6.10972 6.32203 6.37457 6.38893 6.46385 6.61490 6.66326 6.67834 6.76078 6.89129 7.15754 7.22930 7.40590 7.48381 7.74750 7.90747 8.55620 8.65463 9.70150 10.30360 10.65333 11.63131 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008589 B = 0.003653 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.109139 B = 7662.329294 C = 9738.356664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.020 4.020 3 Si 0.904 3.096 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.221 4.221 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.166 3.834 11 C 0.140 3.860 12 H 0.067 0.933 13 C -0.125 4.125 14 C -0.120 4.120 15 C -0.134 4.134 16 C 0.109 3.891 17 N -0.611 5.611 18 C 0.503 3.497 19 O -0.502 6.502 20 C -0.064 4.064 21 C -0.150 4.150 22 C 0.063 3.937 23 N -0.595 5.595 24 H 0.414 0.586 25 C 0.095 3.905 26 C -0.133 4.133 27 C -0.102 4.102 28 C -0.148 4.148 29 C -0.065 4.065 30 C -0.088 4.088 31 H 0.252 0.748 32 H 0.378 0.622 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.168 0.832 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.421 -24.407 0.670 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.215 4.215 3 Si 0.736 3.264 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.352 4.352 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.040 3.960 11 C 0.038 3.962 12 H 0.085 0.915 13 C -0.164 4.164 14 C -0.158 4.158 15 C -0.172 4.172 16 C -0.014 4.014 17 N -0.347 5.347 18 C 0.290 3.710 19 O -0.375 6.375 20 C -0.104 4.104 21 C -0.157 4.157 22 C -0.063 4.063 23 N -0.198 5.198 24 H 0.251 0.749 25 C -0.011 4.011 26 C -0.153 4.153 27 C -0.121 4.121 28 C -0.168 4.168 29 C -0.084 4.084 30 C -0.092 4.092 31 H 0.062 0.938 32 H 0.211 0.789 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.185 0.815 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.992 -23.729 0.490 25.752 hybrid contribution 0.254 1.032 -0.372 1.126 sum 10.245 -22.697 0.118 24.903 Atomic orbital electron populations 1.69654 1.04989 1.25252 1.59121 1.24676 0.95496 0.97411 1.03886 0.86211 0.78698 0.84112 0.77421 1.21946 1.21923 1.20864 1.19246 0.91084 0.84083 1.40830 0.91299 1.42600 1.05674 1.00560 1.89605 1.21249 0.91275 0.83201 1.00293 1.21554 0.94373 0.83170 0.97132 0.91506 1.21927 0.98867 0.98030 0.97558 1.21549 0.97828 0.94632 1.01789 1.21911 0.99127 0.98626 0.97580 1.21690 0.95870 0.86533 0.97344 1.48192 1.07578 1.07557 1.71381 1.20634 0.81597 0.91400 0.77344 1.90860 1.65511 1.33314 1.47855 1.20005 0.90791 0.95955 1.03665 1.19549 0.93229 1.11329 0.91626 1.21507 0.82897 1.02979 0.98927 1.41644 1.08615 1.63529 1.05969 0.74915 1.18220 0.95556 1.03763 0.83598 1.19982 0.95107 1.06128 0.94110 1.20760 0.98127 1.00221 0.92995 1.20600 0.92599 1.03829 0.99743 1.20240 0.98008 0.98075 0.92042 1.18975 0.92185 1.04950 0.93112 0.93817 0.78887 0.94189 0.94603 0.91816 0.89698 0.92001 0.91964 0.91166 0.91591 0.91584 0.90049 0.88716 0.88677 0.81498 0.86531 0.86004 0.86216 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.58 13.06 55.49 0.72 -28.85 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 3 Si 0.90 23.85 29.55 -169.99 -5.02 18.82 16 4 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 5 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.28 -7.35 7.11 56.52 0.40 -6.94 16 7 C -0.22 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.74 -20.20 5.28 -59.90 -0.32 -20.51 16 10 C 0.17 3.88 4.10 -4.04 -0.02 3.86 16 11 C 0.14 2.50 3.04 -67.59 -0.21 2.30 16 12 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.13 -2.07 5.13 -26.59 -0.14 -2.20 16 14 C -0.12 -1.46 5.88 -26.67 -0.16 -1.61 16 15 C -0.13 -1.30 6.08 -26.62 -0.16 -1.46 16 16 C 0.11 1.06 6.33 -3.71 -0.02 1.04 16 17 N -0.61 -8.74 2.97 -165.21 -0.49 -9.23 16 18 C 0.50 7.80 7.60 -10.99 -0.08 7.71 16 19 O -0.50 -10.33 11.44 5.56 0.06 -10.27 16 20 C -0.06 -0.70 4.64 -29.04 -0.13 -0.83 16 21 C -0.15 -1.91 4.81 -102.71 -0.49 -2.41 16 22 C 0.06 0.69 11.73 -16.73 -0.20 0.50 16 23 N -0.60 -6.28 6.07 -10.65 -0.06 -6.35 16 24 H 0.41 3.00 8.96 -40.82 -0.37 2.63 16 25 C 0.10 1.23 7.28 -83.99 -0.61 0.61 16 26 C -0.13 -1.51 10.08 -39.43 -0.40 -1.91 16 27 C -0.10 -1.12 10.01 -39.54 -0.40 -1.52 16 28 C -0.15 -1.76 9.97 -39.94 -0.40 -2.16 16 29 C -0.07 -0.86 10.05 -39.65 -0.40 -1.26 16 30 C -0.09 -1.23 6.35 -105.14 -0.67 -1.90 16 31 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.38 10.51 6.78 -40.82 -0.28 10.23 16 33 H 0.04 1.03 6.44 -51.93 -0.33 0.69 16 34 H 0.04 0.92 7.04 -51.93 -0.37 0.56 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.60 7.19 -51.93 -0.37 1.22 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 43 H 0.09 0.87 7.47 -51.92 -0.39 0.48 16 44 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 45 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 47 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 49 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -37.49 389.66 -11.42 -48.90 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.45 Total: 10.40 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -4.72 Total: -8.80 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.15 Total: -64.94 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.06 Total: -10.27 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.02 Total: 18.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.49 -11.42 -48.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480365369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.739 kcal (2) G-P(sol) polarization free energy of solvation -37.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds